|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL91079_cuf0 >transcript:BL91079_cuf0-protein ID=transcript:BL91079_cuf0-protein|Name=transcript:BL91079_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=841bp
LNNAATPDQIENIVSEFSSLLRDAGHECLSLKRKRKHVRKKQNKRWFDKS
CTEMKREIKNLASLLEKNPLNSEIRGRFFKTKKEYKKLVKKKKRDFHQQI
MNQLSSLRETNPTAFWNLVNKLKPEKTPVSNQISDETWLQHFSNLNKHST
DNNSNVDASATDSVDTCLPSVPNMDSSILDSSITEKELDLAISHLKNNKS
SCDDMVLNEMLKCGKLILKKPLLHIFNSCLRNGYYPKEWSRCHIVPIHKS
GDTALPDNYRGISIISCLGKLFSSILNTRLVNYAEHYSLFKPQQAGFRKK
FRTTDNIFVLSTLVSRYLSRNKRLYACFVDFSKAFDSVWREGLLLKLNKL
GIGGKFLLTIKDMYSKTTNCVKTSQGLTETFVTNCGVRQGCNLSPTLFNL
FISDLADAFDDGICNPPTLHNKKVSCLLYADDLVLFSETQRGLQTSLDKL
ENYCKSWHLNVNLKKTKVIVFTKGGRLPKDCYFLFSNNVIDVVTNYCYLG
IVVNSAGTFKANNKYLHSKGSRALFGINQSLHQADPTISVKNKVFDACVK
PILLYGSEIWGSFKSPKSSPIEAIHLKFCKQTLKVPKSACNLAVMAELGR
YPLRLEASLNAIKHYIRIRQNVPADSLSADALLCQLDLDTSGAKCWASGV
RKTLEECGFAYVWHSPQNLFLNSSQIIPSIHQRLKDMYFQHFTTEMRNNN
KLRTYRLFKNTYHEEKYLNITNSRHKTAITKLRISSHKLNIEKGRHNRIP
LQERICQFCNLDRIEDESHFVVECTLYNDERNILYTYIQDKFPSFKYINS
TEKFLFIMKLNKPCITSSISTYIYNCLMKREEVEPVNSRQV Run BLAST on NCBI mRNA from alignment at Sc0000173:474001..476664- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL91079_cuf0 ID=transcript:BL91079_cuf0|Name=transcript:BL91079_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2664bp|location=Sequence derived from alignment at Sc0000173:474001..476664- (Branchiostoma lanceolatum)
ATCTCAACAATGCAGCCACCCCAGATCAAATTGAAAACATTGTCTCTGAA
TTTAGCTCATTGTTGAGGGATGCTGGCCATGAATGCTTGAGTCTGAAAAG
AAAAAGAAAACATGTACGAAAAAAACAAAACAAACGATGGTTTGACAAAA
GTTGCACGGAAATGAAACGTGAAATTAAAAACTTGGCTTCCTTACTTGAA
AAAAACCCATTGAACTCAGAAATACGAGGAAGGTTCTTTAAAACAAAAAA
AGAATACAAGAAACTGGTTAAAAAGAAAAAGCGTGACTTTCATCAGCAAA
TTATGAACCAGCTATCGTCCCTTAGAGAAACTAACCCAACTGCTTTCTGG
AACTTGGTAAACAAGCTAAAACCAGAAAAAACACCTGTAAGCAACCAAAT
CTCAGACGAAACTTGGCTACAACACTTTAGTAACCTCAACAAACATTCAA
CAGATAACAACAGTAATGTAGACGCCTCAGCCACTGATTCCGTGGACACT
TGTCTTCCTTCTGTCCCAAATATGGACAGCTCCATATTGGACTCCTCCAT
AACAGAGAAAGAATTGGACTTAGCCATATCTCACTTGAAAAATAATAAAT
CAAGTTGTGACGACATGGTCTTAAATGAGATGCTAAAATGCGGAAAGCTT
ATTTTAAAGAAACCACTTCTACATATCTTCAACTCCTGTCTACGAAATGG
TTACTATCCTAAAGAATGGTCACGTTGTCATATTGTTCCTATTCATAAAT
CTGGAGACACCGCGCTCCCAGACAACTATCGGGGAATATCAATAATTAGT
TGTCTGGGAAAGCTATTCTCATCTATCTTAAATACACGTCTTGTTAACTA
TGCAGAACATTACAGCCTTTTCAAACCCCAACAGGCCGGTTTTAGAAAGA
AATTTAGAACAACTGATAACATTTTTGTATTGTCTACTTTAGTAAGCAGA
TATCTAAGCAGGAATAAACGACTCTATGCATGTTTTGTAGATTTTAGCAA
GGCCTTTGACTCGGTTTGGAGAGAGGGTCTCTTGCTGAAATTGAATAAAC
TTGGAATAGGGGGTAAATTTTTGCTTACTATTAAAGACATGTATTCCAAA
ACAACAAATTGTGTAAAAACTAGCCAAGGTCTAACTGAAACTTTTGTAAC
TAACTGTGGGGTTCGTCAAGGCTGTAACTTGAGTCCAACATTGTTTAATC
TATTCATAAGTGATTTAGCAGATGCGTTTGATGATGGTATTTGTAACCCT
CCTACTTTACATAATAAGAAAGTGTCTTGTTTATTATATGCAGATGACCT
AGTGCTTTTCTCTGAAACCCAACGGGGACTGCAAACATCTTTAGACAAAT
TAGAAAACTATTGTAAATCATGGCATTTGAATGTTAATCTCAAGAAAACG
AAAGTAATTGTCTTTACAAAGGGAGGCCGTCTGCCTAAAGACTGTTATTT
CTTGTTTAGTAATAATGTTATAGATGTTGTGACAAACTATTGTTATTTGG
GTATTGTTGTAAACTCAGCTGGCACGTTCAAGGCAAACAACAAATACTTA
CACAGCAAAGGCTCAAGAGCCCTCTTTGGAATCAATCAATCTCTTCACCA
AGCCGATCCTACAATTTCCGTTAAAAACAAAGTCTTTGATGCATGTGTAA
AACCGATATTGTTGTATGGGTCTGAAATCTGGGGATCTTTCAAAAGTCCA
AAATCATCCCCAATTGAAGCCATTCACTTAAAATTCTGCAAACAAACATT
AAAAGTCCCCAAGTCTGCATGTAATCTAGCTGTGATGGCGGAATTGGGGA
GATACCCCCTTAGATTAGAAGCTTCCCTGAACGCTATAAAACACTATATT
AGAATACGCCAGAACGTGCCAGCTGACAGCCTTTCAGCAGACGCCCTTTT
GTGTCAACTTGATTTAGATACATCAGGGGCTAAATGCTGGGCTTCGGGAG
TCCGCAAGACACTTGAGGAATGTGGTTTTGCCTATGTATGGCATTCACCC
CAGAATCTTTTTTTAAATTCTTCTCAGATTATTCCATCCATTCACCAACG
TCTGAAAGATATGTATTTCCAACATTTTACAACAGAAATGCGAAACAATA
ACAAATTACGAACGTACAGATTATTTAAGAATACTTACCACGAGGAGAAA
TATCTAAACATTACAAACTCTCGACACAAAACAGCAATCACAAAACTTCG
GATAAGTTCACACAAACTGAACATTGAAAAGGGCAGACACAACCGCATTC
CTCTGCAAGAAAGAATTTGTCAATTTTGTAATTTAGATAGAATTGAGGAC
GAAAGCCATTTTGTTGTGGAATGTACATTATATAACGATGAGAGAAATAT
CCTTTATACTTATATACAAGATAAGTTCCCTAGTTTTAAATATATAAACA
GCACTGAAAAATTCCTATTTATAATGAAACTGAACAAACCATGTATTACG
AGTTCCATATCTACATACATCTACAATTGCCTTATGAAGCGAGAAGAAGT
CGAACCTGTAAACAGTAGACAAGTATAGATTAGTGCTATTAGACACAGTA
AGATATCTCATTATATTTCGTTATATTATCACCACTGTATGTAGTCCTTT
GCTTATCACCATGACCTGTACTTAGCTTGTTTAAGCATAAATGTACAATA
AAGGTCTTTCATTC Coding sequence (CDS) from alignment at Sc0000173:474001..476664- >transcript:BL91079_cuf0 ID=transcript:BL91079_cuf0|Name=transcript:BL91079_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2526bp|location=Sequence derived from alignment at Sc0000173:474001..476664- (Branchiostoma lanceolatum)
CTCAACAATGCAGCCACCCCAGATCAAATTGAAAACATTGTCTCTGAATT
TAGCTCATTGTTGAGGGATGCTGGCCATGAATGCTTGAGTCTGAAAAGAA
AAAGAAAACATGTACGAAAAAAACAAAACAAACGATGGTTTGACAAAAGT
TGCACGGAAATGAAACGTGAAATTAAAAACTTGGCTTCCTTACTTGAAAA
AAACCCATTGAACTCAGAAATACGAGGAAGGTTCTTTAAAACAAAAAAAG
AATACAAGAAACTGGTTAAAAAGAAAAAGCGTGACTTTCATCAGCAAATT
ATGAACCAGCTATCGTCCCTTAGAGAAACTAACCCAACTGCTTTCTGGAA
CTTGGTAAACAAGCTAAAACCAGAAAAAACACCTGTAAGCAACCAAATCT
CAGACGAAACTTGGCTACAACACTTTAGTAACCTCAACAAACATTCAACA
GATAACAACAGTAATGTAGACGCCTCAGCCACTGATTCCGTGGACACTTG
TCTTCCTTCTGTCCCAAATATGGACAGCTCCATATTGGACTCCTCCATAA
CAGAGAAAGAATTGGACTTAGCCATATCTCACTTGAAAAATAATAAATCA
AGTTGTGACGACATGGTCTTAAATGAGATGCTAAAATGCGGAAAGCTTAT
TTTAAAGAAACCACTTCTACATATCTTCAACTCCTGTCTACGAAATGGTT
ACTATCCTAAAGAATGGTCACGTTGTCATATTGTTCCTATTCATAAATCT
GGAGACACCGCGCTCCCAGACAACTATCGGGGAATATCAATAATTAGTTG
TCTGGGAAAGCTATTCTCATCTATCTTAAATACACGTCTTGTTAACTATG
CAGAACATTACAGCCTTTTCAAACCCCAACAGGCCGGTTTTAGAAAGAAA
TTTAGAACAACTGATAACATTTTTGTATTGTCTACTTTAGTAAGCAGATA
TCTAAGCAGGAATAAACGACTCTATGCATGTTTTGTAGATTTTAGCAAGG
CCTTTGACTCGGTTTGGAGAGAGGGTCTCTTGCTGAAATTGAATAAACTT
GGAATAGGGGGTAAATTTTTGCTTACTATTAAAGACATGTATTCCAAAAC
AACAAATTGTGTAAAAACTAGCCAAGGTCTAACTGAAACTTTTGTAACTA
ACTGTGGGGTTCGTCAAGGCTGTAACTTGAGTCCAACATTGTTTAATCTA
TTCATAAGTGATTTAGCAGATGCGTTTGATGATGGTATTTGTAACCCTCC
TACTTTACATAATAAGAAAGTGTCTTGTTTATTATATGCAGATGACCTAG
TGCTTTTCTCTGAAACCCAACGGGGACTGCAAACATCTTTAGACAAATTA
GAAAACTATTGTAAATCATGGCATTTGAATGTTAATCTCAAGAAAACGAA
AGTAATTGTCTTTACAAAGGGAGGCCGTCTGCCTAAAGACTGTTATTTCT
TGTTTAGTAATAATGTTATAGATGTTGTGACAAACTATTGTTATTTGGGT
ATTGTTGTAAACTCAGCTGGCACGTTCAAGGCAAACAACAAATACTTACA
CAGCAAAGGCTCAAGAGCCCTCTTTGGAATCAATCAATCTCTTCACCAAG
CCGATCCTACAATTTCCGTTAAAAACAAAGTCTTTGATGCATGTGTAAAA
CCGATATTGTTGTATGGGTCTGAAATCTGGGGATCTTTCAAAAGTCCAAA
ATCATCCCCAATTGAAGCCATTCACTTAAAATTCTGCAAACAAACATTAA
AAGTCCCCAAGTCTGCATGTAATCTAGCTGTGATGGCGGAATTGGGGAGA
TACCCCCTTAGATTAGAAGCTTCCCTGAACGCTATAAAACACTATATTAG
AATACGCCAGAACGTGCCAGCTGACAGCCTTTCAGCAGACGCCCTTTTGT
GTCAACTTGATTTAGATACATCAGGGGCTAAATGCTGGGCTTCGGGAGTC
CGCAAGACACTTGAGGAATGTGGTTTTGCCTATGTATGGCATTCACCCCA
GAATCTTTTTTTAAATTCTTCTCAGATTATTCCATCCATTCACCAACGTC
TGAAAGATATGTATTTCCAACATTTTACAACAGAAATGCGAAACAATAAC
AAATTACGAACGTACAGATTATTTAAGAATACTTACCACGAGGAGAAATA
TCTAAACATTACAAACTCTCGACACAAAACAGCAATCACAAAACTTCGGA
TAAGTTCACACAAACTGAACATTGAAAAGGGCAGACACAACCGCATTCCT
CTGCAAGAAAGAATTTGTCAATTTTGTAATTTAGATAGAATTGAGGACGA
AAGCCATTTTGTTGTGGAATGTACATTATATAACGATGAGAGAAATATCC
TTTATACTTATATACAAGATAAGTTCCCTAGTTTTAAATATATAAACAGC
ACTGAAAAATTCCTATTTATAATGAAACTGAACAAACCATGTATTACGAG
TTCCATATCTACATACATCTACAATTGCCTTATGAAGCGAGAAGAAGTCG
AACCTGTAAACAGTAGACAAGTATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000173 | genome | Sc0000173:474001..476664 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL91079_cuf0 |
| Biotype | protein_coding |
|
