|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL91041_cuf3 >transcript:BL91041_cuf3-protein ID=transcript:BL91041_cuf3-protein|Name=transcript:BL91041_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=124bp
MRANPMTTDSTFSKLLVLLFMSLARTSMKVTCTRVPVATPCKIPVTRPPA
SVLVTTRPMPCPIGPDALKTTHVTTLYGHDRGPAATFSPRLRAMMHLWTT
TTKNSHSRSACVGWRPIATPSNAP Run BLAST on NCBI mRNA from alignment at Sc0000302:282659..290893+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL91041_cuf3 ID=transcript:BL91041_cuf3|Name=transcript:BL91041_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=8235bp|location=Sequence derived from alignment at Sc0000302:282659..290893+ (Branchiostoma lanceolatum)
CAGCCGTGTAGAATTTCTCGGAATGGTGTTTGAAGACATCGATAGTTGAC
AGAACAGGTAAGAATTTGAGGGTTAGTTTTCTTGGTCAGAAGTTTTGATT
CCTGAGATAATGACAACTAATTTTTGTCAACTTCTTCGTAGAATGCATGC
ACTATCATAGTCTGTATAACGCAAACTCCAGCTGTCCGGGGGTTTCTCTC
CCCTCCCCCCCGTTTCTCTCCCTCTCCTCTTGGGTTGTGAGGCCGTTACA
GGGCGGCGAGCGGTCCCATGAGGCTTGGTTGAATTCAGGCTAGCATTATC
ATTATCGGCCATGATAAACTGTAATTGTGGCGCCGCCTACCTGATCTGAA
CTGCATGCGTAGATGGCGTGGTTTTATATAGGAATGTCTAGACGGTAACA
AATTCCTCCAATGATTGTAAGAACCCATTCTAAACCCATACTATACACTC
TTGTATTAGGTAGATTAGCCCATAGATATATATAGAACTGTAGTTATGTA
CCACGTACCAGTCATACTTTGTACCTTGTACAATTGCTGCGCAATAAAGT
TACCTATAAACCAAAGGTTTAAAAAATGTCTTTGATATATACTTTGCAAG
TTTGCATGTATTATTGATATGAACTGTTTCTGTCGTAATTATTAAGCAAA
AAAAACGTTTTTACCCTTATCAGAACATATAAGGTGTTGTATGAACATTG
ATGGGGAAACTCTCATTTGGGAGGTTAAACTGAAGACTGATTATCGCAAC
AGATGTAGCAACCTAAATTGTCATCAGATCAGTAGAGAATGGTATATTTG
CACTCAATGTTCTGGATGTTGCATGGGGAAAGTGGAAGCGGTGGCAGTCA
GTACTGAAAGTTCATCGGCAACAACTTTTCACATAGAATTCTTAAGACAT
GTACATTTAAAACAACAATTTGTTCTGGTATGTACTCAGTAAACTATACT
ATTAAGCTCGCTCCTGAAGCTTCGCCAAAAAAGGAAACTGCGCTACTGAC
AGGATCATCCTGTCAGCGGTACAATTTTTTTATACTACTGACAGGATGAT
CCTGTCAGCAGTGCAAATTTTTCTCAGACTGCTGACAGGATGATCCTGCC
AATAGCCTTAGGCGACCAAGAAACAAACCCCTGGTTAGATCTAGACCAAA
CAGTACCAGATAACAATGGCTATGATGAAGACATGGCAGACTATATATCA
CTCTGCACTTCAGTCCAGGGGCATACCCCCAGGTCCTTGACACAGTTTGT
CTGGTTAATATGTATCCAAACCTAACACGATTCATTCAGACATAAATTAG
GTTATAGGCAGGTTTACAAGGCAGAGTCGCGGTCCTAAGTTTTTATATTC
TTACTGTCACGCATTAGATAGTGATTGCCGGACTGATTCCTTGATAGCCA
GGGAGATAAATCAATAAACCCCCTATAATGATGTTACGCTAAACGCAATA
AATAATACCCTGCATATTATATAGTTGTTGTTTTTTTAGTCCAGGTTCCT
ACTCTGGGAGCCCTGACTAGCACCGGGTCGTTAGAGATTTCCATCGGCGG
CCCAAGAACAGTGAGCCCGCCCGATCTTAATCAACGCTCCGGGGAGGTTG
TAGCCCGGGGGAGTGGACCACGCCCCTTTAATTAAGGGCCGGTCACCTCT
CGGGCTGGAAGTCCTCCGGTGCGCTAATTACGGTATCGGCGGGCTTGGAG
CTCTAGGCCGCCGATAGCCCGGTCCCAGTCTCTAGGGGTCGGCTAATGCT
ACGGTCACATTTCCAATCCGGGGCCCGGCCGGGCTGTTTGCGAAAACGGA
AAATTAAAGATGCATAACAAGAAAATACACAATATATGGTCAGGAGTAAT
TCTTCTACGTTTTGTGTCTTTTGATGTCTTTTATATCATATTTGTCGTTC
CCACAAGCTGCCCGGCCGGCCGGGCCCACGATTGGAAATGTGACCCTACA
TGTAGCTTTAGTGGTGTTCTACCGGGCCCAGTCTTCTTGAGCCTTTTCTG
TCAGCCTTTTTACTTAGCTGCCATATAGAATTCCGTAGCCATTCTTCTTT
AGCTGCCATAGACAGTTTCTCCGCCGCCTTAGGGGGCGAAGTAATTTAAT
CCAAGGCCGTAAACCCACACCAAGAGCGGGCTAAGCTGTCTGGACGGGCG
ATGATCCCTCCCAACGCCGTAGAGATATCGAGGAGCCCACGATGGTATGG
TTTCCAGGCTAGGCCGCCGAAGGAATTGGCTAAAAGGAACTGGCTAAAAG
GCCCGATAAACAGTCTGGTTTCCAGGGTAACCATATCCCACTACGCCTTA
GTAAGACATAAACCGTCCCCAACTTGTTGCTTTGATCATTTCTTCACCAA
ATGAAAAAATATTTCTGCTTTGAACTCAAATCACACAAGTAAACACAGCA
TTTGAATTTTGATCAAGTTATATTTCGAAACAAAGAACAAAGATCAACCA
TTGATATAATAGTGAACTACAAAGCAATCGTTATAACGCATCTAAACAAT
TTACCTGCATACTAGTATTACATAAGGTGTTTACGCTAAAGGCGTCACAA
AACGACCCTCTATAGCATGCAGACAAGACAATACAACGTCAAGAAATAAT
TATAGCCACTTCCAGCTATTTGTTAACTTGCAGGGGCGTGTCTCCGGTAA
TTGACCTAAACACAGTAAAACTTTTAAAGCCACTAAGCACACAGTCAGCG
TTTCGGCGAGGACTTTGTCAGGCAGCCTCAGCACTCACGGTGTCACGAGG
CATATTACGTGTAACACGTGAGGTCTATCGCGGGATATATCTTTTTACAG
CAAGTATGGCATCAGGCACTTATTCAATTAACTATCTTTTGTCGTATTTC
TGCTCCACTCTGTGTATTTGTGGTCGGCACTCGTGCCATGCTCCAGACAA
GTTTCGCGCCAGTTTGTAAAATCGTCAGAACCATTTTGGGCCCGTGTGGA
ACAGGTTCACGAGAGCCGTGTGCAAAACCTGCTGCTCATTATATAATTAA
TATTCAACCCTTGTTAACTTGTGGGGGGATGTCTAATATAGTATACACAC
AAGAAAAGGGTTAATATGTAGCCAAACCGAACACTGGCTCATTCAGATTT
AGATATAGGCACGTTTACAACGCCGAGAACCGTCAGAAGTATTTCCTATT
TGTTTGGCTACATACATGTATTAACCCTTTTATTGTGTGCAGGTCAATTA
CCAGGAGACATCCCACTGCAAGTTAACAAGGGTTAAATATCAAAGCGGCA
GGTTTTGCACACGGATCTCGTGAACCTTTTCCACACGGCCCCAAAATGAT
TCTGACGATTTTACAAATTGGCTCGAAACTTGTCTGAAGCATGGCGCAAG
TGCCAACCACAGTGCGGAGTCTAGCCTCCATTGCAGGCTCGAACGGGTAA
CTGACCTGCACACAGTATATCTGGTTAATATTCAAACCTAACACGGTTCA
TTCAAACATGAATTAAGTTATAGGCAGGTTTACAATGCGAAGCCGCGGTC
AAAAGTTTTTATAGTCTCCTTGGTCTTACTGACACGCATTAGATAGTGAT
TACCGGACTGATTTATTGATACTCAGAGAGATATATTGATAAATGATGTT
ACGCGAAGCGCAATGGATTATATTATATAGTATATTTCAAAGTCCAGGTT
CCAACTACTAGTATATCCCATTACGCCCTAGCTAGAAATGAACCGTCCCC
AACTTGAATGGGGGCGTGGGATCCAATCCCACTTCTGACACCATGTAACT
TTATCCTTAGTGACTCAGGCAGAGACCGTAGATGCTGCTATAACCTTGTA
TTCAATGCTTGTGTTAGTAAATACATTGACGTGTGCTCAGCTCCAGTTAC
GATAGAGAAGAGATCGTAGTACTTCAGGTTGTCGTTTTTGAGAGCACTCC
TTATTCCATATTCATGATGGACTATACTATTACTAAGTTACATAAGTGGG
GGGAGTGGCGCTTACAGCTATCTAACGTCTTGTACCAGTTGCCATGAGTA
TTTCTTCACCATATGCTCCATATTTCTACTTAGAACTCAAATCATACAAG
TAAACACAGCATTTGAATTTTGATCAAGTTTTATTTCGAAACAACGAACA
AAGATCAAACTTAGATAAAAGTGAACTACAAAGCAATCATTGTTATTATT
GTTTATTTCGGGCTCGTCATTATGACACATCTAAACAATTTACCAGCATA
TTACATAAGTCGCTAACGTTAAAGGCGTTACAAAACGATCCTCTATAGAC
AAAACAATGTCAAGAAATAAACATAAGCACTGAGCACTTCCAGCTATTTG
TTAACACATTTGTTATATCAATAATGGTGATTATGACTTAGCATACTAAA
ATTGGACAAAGTCTTCTTTTCTACACGTCAAGGCAATCACATGCACTGTT
GATCACTATATACACTGCTATATATACTGCTATATATATATGCTTCTAAT
TATAGCCATGCAATATGAGCCATTCAATCATGACTTAGCATGCTGAAGAT
TGGACAAAGTCTTCTACACGTCAAGGCAATCATATATACTGTTGATCACT
ATAAATACTGCTATATATACTGCTACATATATACTGATAATTATAGCCAC
TTCCAGCTATTTGTTTACACATTTGTTATATCAATCATGGTAATTATGAC
ATAGCATGCTAAAAATTCAACAAAGTCTTCTACAAGTGAAGGCAAATATA
TATATATATATATGCTGTTGATCACTACATCTTATTTAACAAGTAGTCGT
GCTTGCTGAGCGTAGTTGGAAATGTTAAATAAGACAAGAAAAATATGCTG
TGGCAAGGAGGAGCTCAATGTAGCTGCCCCTCGACATGCAAAACAATTAT
ACTGATATCGTGATATAGAAATAACTTCTTGAATGAAGATTAGTCAATTA
TAAAATGTACACCTTTACTCAATACATGAATATCATTATAGCACTATTCT
TTTTTTTTTTCACCGGCGGAATCATGTCGCCAGCTGGCGATTTTCAATGA
GCCCTGGGGAAACCCCAAACAGAGTTGTTAACATAAAATTCAAACAAGGT
TGCAAGAAATAACAAAACATTATGCGAACTACAAATTGATATAAAACCGG
AGTAACTTGGATAACACAAACATAACATCATATAACCAAATAAGTGCCTT
GGCATAATAGTACTAATAACTAAACAGAATGGAATGAAATCAGGATTTGA
ATTTGCATATCAATGTTGACATAATGTGAAATTATATCAAATAGATAAGT
GAAGAAAAAAATAAACATATACATAAGTCAACTCTTTGACTGGCAGATAG
GGGTCCTAGGTACATGTTTAAGGATTGGGATTCATGTCTTTTGCTTGGAA
AATATATAGCTTTTTGGGTAAAAGATCTCGTGAGAAAAAAATGCATATCA
AGAATATACATGGCGTATGGTAAGCAGTAATTTTTAAAATGTTTTGTGTG
TCTTGTTGTCTTTTATATGAAAGTTTTCGTTCCCACAAGCTGCCTGGCCG
GGCCCCGGCTTGGAAATGTGACCCTAGCATAATGCGAATGCCATCCACTA
TAGGCCTCCATAGCAGGCTTTGAACCGGCTTTTTTGGGGCTAAATAATAC
ACTTTTTGCAGCCAGCCCGTAACTATCAGCCACCCCGTAACCATTTCTAC
CGGTGAGATGGTTACGGGGTGGCTGATAGTTACGGGCTGGCTGCAAAAAG
TGTATTATTTAGCCCCCGAAAAGCCGGTTCAAAGCCTGCTATGGAGGCTA
AACTAACCCATTGTCCTTTTCAGTGATCACCGTGCGGCAGGAAAGTCAAT
CCTGCGATGAGGGCGAATCCGATGACGACAGACAGCACATTTAGCAAATT
GCTAGTTTTGCTCTTCATGTCGTTGGCCAGAACCTCCATGAAAGTGACAT
GTACCAGAGTTCCCGTAGCCACCCCCTGTAAAATACCGGTGACGAGACCG
CCGGCGTCCGTTTTGGTTACCACGAGACCGATGCCCTGTCCTATAGGACC
CGATGCGCTGAAAACTACGCATGTCACGACCTTATACGGCCATGACAGGG
GACCGGCTGCGACGTTCAGCCCAAGACTCAGGGCTATGATGCATTTGTGG
ACGACAACTACGAAGAACAGCCACAGCAGATCTGCTTGTGTGGGTTGGAG
ACCGATTGCTACGCCTTCTAACGCCCCATGAACGCTTAAAGCGACTAGAA
GCAGAATTGTGTGCACCTTACTCATACTGGAACTGTCCTCACGTGAGACC
ACAGAACTGTCCGGTGGCTCTGTGGTTTGCTCATCTTCCGAAGGTTTGAT
TGTCCCGTTGTCCGTTTTGGATTCCTCCCTGATCTCGTCTATCTCTATCT
CGTTCTCATCACGTGCATACGCCTCATTGCTGTGATATTCTCGACGTCGA
TATCGATCCTGACGCTCGTCTTCGGCCGAACTTTGCTCTTGAGGTGAACA
ATGGGGTGTCAAACCGTCGATCAGGTGAACGATTAAAAACCCGAGGCACG
TCACCGCTTCCGCCATGGGGTAGTGGTGTAAGATCTCGATTCCGTATCCG
TGCAGGATCTCAAGGTCCTCCCTGACTTCTGGCAGCAGGTGAAGAAAACA
TGTGGCGAGTAAGACTCCCCCAACAAAGCTGTTAACATTGCTTAGAAAGC
GGGACTTCAGGGTGTTGCTGAGCGTTTTCACTTTGGACGCCCTCCGTGCC
AACGCCAGCGGGATCAAGGACGACGCCAAACATGAAAATAGAAGTCCGAA
CAGCGTCAGGACTTGTACGTAGATCAGTTCCATCCTTCAGGGTAGGTAGA
CAAGCTTGATATGAACTTAAATATATATATGAAGTAACGAGGTCAGGGTT
GATTAAGGCACCGTCTCGGCTTTAAAGTTCGTGAGAGAGTGGCTCGACTG
GCACTGTGTCACGAGGTATGTCTGGGACGCTTGTGTCACGTGAGCTTCAT
TACGGGTCATCTATTTCGACAGAAAGTGTTGCATCAGTCACTTAAAATTG
ACTATCTCTTGTCGTATTTCTGTGTTACTCTGTGTAGTTGTGGTTGACAC
TTGCGCCATGTTCCAGACAAGTTTCCCGCCAGCATGCAAAATGGTCAGAA
TCATTTAGAGGCCGTGTGGAACGAGGTCCGTGTGCAAGACCCGGCAGTGA
CCCCGTGTGCAAAACTCATGAATATTCAACCCTTCACCTTACAGGGGCGT
GTCCCCAGGTAATCATACCCTAAAGGTAAACAGCGTCTCTGCGAGGACTT
TGTCAGGCTGACTCGATCAGCACTGTATCACGAGGCGTTCACGTGTAACG
TGTATTACGTGAGGTCAATCATGGGTCATATTTTCTACAGAAAGCATGGC
ATCAGTCCCTCATTCAATTGACTATCTCTTGACGTATTTCTATTCTACTC
GATGTATTTGTGGTTGGCACATGCGCCATGTTCCAGACAAGTTTCGCGCC
AGTTTGTAAAATCGTCAGAATGATTTTGGGGCCGTGTGGAACAGGTACAC
TAGAGCCGTGTGCAAAACCTGCCGGTCATTAATATTCAACCCTTCTTGAC
TTGTGGGCGTGTCTCCAGGCAATCAGACCGTAAAGGTAAACAGCGTCTCT
GTAAGGACTTTGTCAAGCGGCATTGTGTCACGAGGCATGTTACGTGTAAC
ACGTGAGGTCAATCATGGGACATATATTTTTGCAGAAAGTATGGCATCAG
TCACTTATTCGATTGACTAACTCTTGCCGTATTTCTGTTCCACACTATGT
ATCTGTGGTTGGCACTTGCGCCATGCTCCAGACAAGTTTCGCGCCAGTTG
GTAAAATTGTCAGAATGATTTTGGGGCCGTGTGGAAAAGGTTCACTAGAG
CCGTGTGCAAAACCTGCCGCTCGTGAATATTCAACAACTGTCAACTTGAA
GGGGGGTGTCTCAGGGTCATTGATCTATAAACAGTAAAAGCACACAGTCA
ACGTTTCGACGAGGACTTTGTCAGGCAGACTTAGCACTGTGTTACGAGGT
ATAGTACCTGTAACACGTGAGGTCTACCATGGGACATTTATTTTTACAGA
AAGCATGGCATCAATCACTTAAATTCAATTGACTATTAAACTCGTGTCGT
ATTTCTGTTCTGTTATCTGTGGTTGACACTTGCGACATGTTCTAGAAAAG
TTTCGCGCCAGCTTGTAAAATCGTCTGAATCATTTTGTGGCCGTGTGGAA
CAGGTACACTAGAGCCGTGTGCAAAAAATGGTGCT Coding sequence (CDS) from alignment at Sc0000302:282659..290893+ >transcript:BL91041_cuf3 ID=transcript:BL91041_cuf3|Name=transcript:BL91041_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=375bp|location=Sequence derived from alignment at Sc0000302:282659..290893+ (Branchiostoma lanceolatum)
ATGAGGGCGAATCCGATGACGACAGACAGCACATTTAGCAAATTGCTAGT
TTTGCTCTTCATGTCGTTGGCCAGAACCTCCATGAAAGTGACATGTACCA
GAGTTCCCGTAGCCACCCCCTGTAAAATACCGGTGACGAGACCGCCGGCG
TCCGTTTTGGTTACCACGAGACCGATGCCCTGTCCTATAGGACCCGATGC
GCTGAAAACTACGCATGTCACGACCTTATACGGCCATGACAGGGGACCGG
CTGCGACGTTCAGCCCAAGACTCAGGGCTATGATGCATTTGTGGACGACA
ACTACGAAGAACAGCCACAGCAGATCTGCTTGTGTGGGTTGGAGACCGAT
TGCTACGCCTTCTAACGCCCCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000302 | genome | Sc0000302:282659..290893 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL91041_cuf3 |
| Biotype | protein_coding |
|
