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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90963_cuf1 >transcript:BL90963_cuf1-protein ID=transcript:BL90963_cuf1-protein|Name=transcript:BL90963_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=124bp
TEALMLRQDMEEKFKKLSLQESDDRSLEGPTKVTFQPCSLSQVSGGSLSV
FAGFSIEVQEPAVESLPCSVTVTTNKADLTGGDVAPQIEVTSPQGKTTLI
QTTAHTSPPLAAGKGQTSRVRRVW Run BLAST on NCBI mRNA from alignment at Sc0000001:1743023..1749412+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90963_cuf1 ID=transcript:BL90963_cuf1|Name=transcript:BL90963_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=6390bp|location=Sequence derived from alignment at Sc0000001:1743023..1749412+ (Branchiostoma lanceolatum)
CACAGAAGCTTTGATGTTGAGGCAAGACATAGAAGAAAAGTTTAAGAAAC
TCTCCTTGCAGGAAACAGATAACAGGAGTGGGGAAGGTCCTACAAAAGTG
ACCTTCCAACCCTGTAGCTTATCCCAGGTTTCTGGAGGTTCCTTGTCAGT
GTTTGCAGGGTTCAGTATTGATGTACAGGAGCCAGCAGTAGAGAGTCTGC
CCTGCTCTGTCACAGTTACAACCAACAAGGCAGATCTTACAGGTGGGGAT
GTTGCACCACAGATAGAGGTGACCTCCCCCCAGGGCAAAACCACCCTGAT
ACAGACTACAGCACACACTGGTCCCCCACTAGCTGCAGGGAAGGGACAAA
CCAGCAGAGTTAGGAGGGTCTGGGGTGGAGAATGGAGACCTCAGGAGTCA
GGGAAACACACACTGGGGGTCTGTATGGGGGGTAAGAAGGACCTGGGTTC
TCTTACTGTAGATGTGGGCTGTAACAACCCTGTACTGAGGTTTGGACAGA
AGGGCAGCCAGCAGGGGCAGTTTGACAGGCCTATAGATGTAGCAGTCAGG
GGGGACAGGCTGTATGTGGCTGATAATCTTAACCAACGTATTCAGATGTT
TGATATGAGTGGTGTGTTTTGCTCCTCATTTTCCACAACATGCCCTGGAT
CAGTTGCAGTTCAGACTGATGGCACCATAGTGGTGAACTCTGGGAAGGAA
GTGAAAAAATTTTCCCCAACAGGAAAACTGCTGCACAAATTTCCTCTGGG
TGAATATTGTCCAAAGCCCTATGGCCTGGCAGTACAGAGGGATGGGAGGG
TTGTTGTAGCTGATTATGGCAAACACAGTATCTTCATGTTTGAGGCAGAT
GGGACACTGGTGAAACAGGTGGGGGGACAGGGACGGGGGGAGGGGCAGTT
TAAACAGCCATGGTTTGTCTGTGTGGATAAAGGAGACAACATCATTGTGT
CAGATAAAGAAAACAACCGTGTTCAGGTGTTTGACAAGAACCTGAACTTC
CAACACAAGTTTGGTCAGAAGGGCAGTCAGCCACAGGACATGTGGGGCCC
TAATGGGGTGTCAGCTGACAGTAAGGGGAACATAGTTCTGACTAACATTG
GAGAGGTATCTGAGGTAGGTGGTGTAGAACATGGCAAGAAGCTTCAGGTG
TTCCGTCCAGACGGCACCTGGATGACCACCATTAGCAGTGACGGGGACAA
ACTGAAGCGGCCCCATGGGGTGGCTGTGACAGAGGATGGACATGTGTTTG
TAGCTGGTGACCGCTGTATCAGGAAGTACAGATACATGTAACTGTGCAGA
ATATATTAATCATTAGGTTCTGATGAGCTCACTGAGGACTAGTTTAGGCA
ATTTTGATAATGCAGTCTGAAAACTCTTAAATCATTAATGCTTCTGTCAT
TTTTGTTGCTCCATGAAGGAGGTCAGTGACCTCCAACTGAGGAGTATTGT
GGCTGGTTATGTCAAACTCTACTGTCATTTCATGCATGTGGCTGGTTATG
TCAAACTCTACTGTCATTTCATGCATGTGGCTGGTTATGTCAAACTCTTG
TGTCATTTCATGCATGTGGCTGTAAAAAAGCTTTGATTTCTAAGCTTAAG
ACATGATTTTAAGCGAGAATAATATCAAACATTATGTGACTGTACAGTAG
AAACTGGCTGGATAACTTACATGACAATCTGTAGTGCTATCAATAAAATG
ACATATTGTAAAGTGAAAATAAGGTAACTGTTGTAGTTATCTTGTTCAAT
ATCAATTCATCTAAAACTTTGTAATACTTGTCCAGGACATTAAGTCAACT
ATTCAGTTTACAATTTGGTAGCATGGGTCCATTGCACTGTTGGTGTTGTT
TCTGCATCTAATATAATGTTCTAGATTATACCAGTAAATAAAGTTGGCCA
GAGTGTCCCTTGTATCTGTACATGTTGTTGTTTGTTTGTTTGTTTGTTTA
TTTTCATTTCACCAGGGAAATCATGTCGCCAGCTGTGCATGTACAATGTA
CAAGTGTTCAAGTGCAAGAATGTGCTGTAATACCTTAGAGAGCTGCTAGG
GGCCTATCATCAACCTTATACTTCATTCACCCCACCCCTACGGCCCTACC
CACCTTCCAGATATCATATTATTATGGATCCATCCACAGCTTCTAGAGTC
ATGCTAACAGACACACAGATACACAGACAAACAAACAGCACTGAAAACAT
AACCTTCTTGGCAAAGGTAATTACATAACCCAGCCAGGTAATGCTACAGG
TGACTTTGTTATCAGCAGCTAAAAATCCTATACAGGAGGCAAAATGTTTG
CAGACTCAAACAGAGAACCAATTCAACAAAACAGTTACTGTGTACCACTC
AAAAAACATGACCATAGCATGTCCAGAGCAAGACATATCAAAACCTGAAG
TTCTGCTGCAATACCTTGGAAAACTGCTAGGGGGCCCATCATTTACTATA
ATTTTCCTGACCCCTACCAAAAATCATAAGGATCCATCAACTCGAGACAT
GTTAACTGACACACACTCAGATAGACAGACAAACAGCAGGTGATCATGAT
TTTACAGGTGACTTTGCAAAATGTTTGCTGACTCAAACTGAGAATCAATC
AAACAAATTCAGTTACTGTGTACATCACCTAAACGGTTATACTGTTGAAA
TGGGGTTGTGGGAACTACAATCATGACACTGATAGATAAATCTAGTCTTG
GAGCACCTAGTGATATTTTAATTTTATTAGTAACATGACATATAGTCCAG
TGGTTACTGACCCTGCCTCTGGAACTAGAGTTTGGGAGTTGAATCCGACT
GTTGTCGCTTGCTTTATATGCACACTACCGGAAAGGGTTGCAGACTTGCA
GTCCTTGGGACGGGTTGTTAAGCCGTGGTGACTGTTTATCGTGCTCTGTG
GAATTTCTCTGGTACAATGAACCTGTAAATGCTGCACCTACAATCTGTCT
TCGAGTCTGTCACGACCAGTGGAAGAATAGCCCTTCAGTGAGCTTAGAGA
TCAAATTTCACATTAATAAAGCAATGCACTGCGACATAGTTGGACACAAC
AAAATGATGGTTTAAAGAAAACAGTCTGGCGTGAGACTGTGTACATTTGT
ACACGTCACCTTGGAGCTGTGGTTAAAATGAACCCACATTTCTTGGCACC
GTTGAACCGTGAAAGTACATGCGCAGGAAACCCAAGTTCTACACCCGACT
TCACAACAAGCAGGTGAGGTTTCTACAAAGTATTCTTCCCTTCCTTGTAC
CTGTAAGACTTATGTTGGCATAGGGACAATATAACATGTTACAGAATGAT
CTCTGATTGACATGCTTAACATTTTGAAGGAAACTTCAGGAAAATTAAGG
CAAAAAATAAGGGTCAAAGATCTCTTCACTACACTGGCCATTTTGTTGCT
CCTTAAACATTGCCTGAGTTTTTAAAGGTGCCCTAAGCGATTTCAGGGGG
TAAAACTTGAAATATTCTGGGGAAGGCGATTCTGTTTGGTGAGGTTGCAA
TTTACATTTACTTCCCTATATTAGCACATCTTCATCATTATTTCATACAT
TGGGCGTTTAAAAATAGCTCAGAAGCAAGCCACAAAAGGAGTATTTCATT
TATTGGGTCCCCCAAAAAATCAGCCCAGAATCCAACCGTAACCGTTTTCT
GTCGACAATTTTCGGTAACTTCCGGCCGCGTGACGTCACAACGCCCAAGC
ACATTGAGCCATGACCACGTGATTATTTCTTTGGAAGCGTTCGGGACTTG
TCGGTCAGAATCGTGCATGTTCGGAAGATTTGAAATGATGGCTGGCCTCC
AAGTGCTCAGATTTTCAATGAGTTCCCACCACACAACGGCATCACATTTT
TGCTCCATGATGGTCGATATGCGATGGGATAGTGTTTTCTAAACTTACTA
TGGATAGAAATCAGAAAAAAAATTGATTTTGAATATATGACTTTCAGCGC
CCTCATATTGCTTAGGTTGCCTTTAACAGTCAGAGTTGTACTTGAAATAA
GACCGTATAAAGACACTCGGTAGCTGCAACTTAAAGTGATTGAAAGCAAA
TACAAGACATGCAATGTGCATTTCTCAAGCATTCCAAGGCATTGGCATGA
CTAAAAAGTGTCTCTCATGCAGACCATGGTACCTCATATGTTATAGTATG
AAATCAATGACAGTTACAAATTTCTGGATGATTCCGGTCACATTAGTCAT
GCAACAGGTTTACAATAGGAAACGGAAGGCACTCTTGGGACAGTTGTGGA
TGTTTCTAGCTCAGAATTCAGCTGTCTTTTGGCGGATTAGAAAAGGTTAC
GGTAACCATATCATTAGGCTCTTGCTAACTCTCAGATCTGTTATAGCCTT
GTTGATAATCTGCCAATGAAAACTGTATGACCGCTGCACCTTACACAGTA
ACTATACTAACTGTAGGACTGCCTCCGTCAGTTTAGGAGCACAGTGCCAA
AGGATGGGGAAAACTGGGATCCAAGCAATGAGGGAAACAGAGATAGCAGC
ACAAAAACCAACACTAGAGTTTGGAGATCTCATACCTCCATGAAATAGTT
AAATTATGTATATGTGCAAAATCTATGCACAGTTTTCCTACAGCTTTCAC
TGTCTTACATCTGATTCAGTTTTTCTGTAACAAGTAACAAGTAAGAGATG
CAGCTTATCATTTATCAAGTTGCACATTGATAATGCAAATTAGGCCCTTA
TTTGCATATTTGGTACATTGTATCTCCTAATATTTCATCTGACAGAGACT
ACATTATGTTACATGTATTTAAAAGTCTTGTTATGTCAAACACTGGACTT
ATGCACTTTCCTCATTAATCATGCAACTTAGGTAAAATAATTGCATAATT
TGCATCTAATTGCGTACAGACACACACAGACACAAAACAATACCTCCAAT
TTTTCAAGGAGGCAAAAAGTGAGGATTCACTGTTACTGTTAGTATAACAG
TTGCTAACCAATACAACATTGACTTTGGGAGGCTCTAACTTGGACATTCA
ACTCAACTCTATGATGATAACAGTTTCTGTATCTCCAGAAACCTGAAACG
CCTTCAAGGACTGTGTCTACACTCAGGTCCAGACCAACCATGGCTGAACT
CTCCCCCCTTACCCGGCTGTTCGTCAAGATTTCTGACAGCTTGTCAGAAG
AAGGCATCAGAAATTTGCGGGCCATTCTGGCTCAAGAAGGTCTCAGACAG
GGGAAAGTCGAACAAGCGACACCTCACGAGATGTTCAACATGCTGGAGGC
TGACAACAGGATTGGCAAGGGCAACCTTGGCTTTCTTGTACAGGTCTTGA
GGAGTCTAAAGAAAGGGAAGCTAGCAGAAGAAGCTGAACGGCTTGAACAA
GACCAGAGAAGGGAACTTCAAGGTAGGACTGAATTATCTGCAACATCTGT
GTAGAATCTGTAAAGCAAAATTATTTTAAGTAGTGATGTGCTATGAGGTA
ACATACTGTACAGTGAGTGAGTTATTACTTAATAAGTGCTTCAACTAAGA
GTGTGCATTAAATACTTAAGCCTGTAAATTAAGTGCATAAAGTACAGAAC
AGCTTTTCATGACATTGTGATCTTCTTATTTGTGACGTCATCATTGGTTT
TGTCATTGGTCAGGAGTGACTGTGACTGATTTTATATTTTCTAATACGGC
CCATTTTCTGTCACTAAAGGGGGCAAGCTTCACGACCCCAAAGAAGTGGA
TAAAGAAGCAGCAAACTACAAAGCTTCAGTAGAAGCAGCCATCTCCAAGA
TAACCCAGAAAGTGGAAATACTGAACAAGGAAATCACAGCAACAGCAGTG
AACTGTGAGCAGGTAGAGAAGGAAATCCAGCAGCACTACAAACGGCTGAT
CTCCAAACTGCAGCTGGAAGAGCAGGAGATGGTCACCAGGGTACAGAAGG
TCAACAGAGACAGGGGAGGGGAACTCACTCAGGAGAAAGAAAAGATGGAG
AAAGATTTGAGAAAGACAAAAGAAGCAGAGATTTCAGTTCAAAAGATGTT
AGACTGTAAAGATGACACAGAATCTTTGGTCTTGAGGCAAGACATGGAAG
AAAAGTTTAAGAAACTATCATTGCAGGAATCAGATGACAGGAGTTTGGAA
GGCCCTACAAAAGTGACCTTCCAACCCTGTAGCTTATCCCAGGTTTCTGG
GGGTTCCTTGTCAGTGTTTGCAGGGTTCAGTATTGAAGTACAGGAGCCAG
CAGTAGAGAGTCTGCCCTGCTCTGTCACAGTCACAACCAACAAGGCAGAT
CTGACAGGTGGGGATGTTGCACCACAGATAGAGGTGACCTCCCCCCAGGG
CAAAACCACCCTGATACAGACTACAGCACACACTAGTCCCCCACTAGCTG
CAGGGAAGGGACAAACCAGCAGAGTTAGGAGGGTCTGGGG Coding sequence (CDS) from alignment at Sc0000001:1743023..1749412+ >transcript:BL90963_cuf1 ID=transcript:BL90963_cuf1|Name=transcript:BL90963_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=744bp|location=Sequence derived from alignment at Sc0000001:1743023..1749412+ (Branchiostoma lanceolatum)
ACAGAAGCTTTGATGTTGAGGCAAGACATGGAAGAAAAGTTTAAGAAACT
ATCATTGCAGGAATCAGATGACAGGAGTTTGGAAGGCCCTACAAAAGTGA
CCTTCCAACCCTGTAGCTTATCCCAGGTTTCTGGGGGTTCCTTGTCAGTG
TTTGCAGGGTTCAGTATTGAAGTACAGGAGCCAGCAGTAGAGAGTCTGCC
CTGCTCTGTCACAGTCACAACCAACAAGGCAGATCTGACAGGTGGGGATG
TTGCACCACAGATAGAGGTGACCTCCCCCCAGGGCAAAACCACCCTGATA
CAGACTACAGCACACACTAGTCCCCCACTAGCTGCAGGGAAGGGACAAAC
CAGCAGAGTTAGGAGGGTCTGGACAGAAGCTTTGATGTTGAGGCAAGACA
TGGAAGAAAAGTTTAAGAAACTATCATTGCAGGAATCAGATGACAGGAGT
TTGGAAGGCCCTACAAAAGTGACCTTCCAACCCTGTAGCTTATCCCAGGT
TTCTGGGGGTTCCTTGTCAGTGTTTGCAGGGTTCAGTATTGAAGTACAGG
AGCCAGCAGTAGAGAGTCTGCCCTGCTCTGTCACAGTCACAACCAACAAG
GCAGATCTGACAGGTGGGGATGTTGCACCACAGATAGAGGTGACCTCCCC
CCAGGGCAAAACCACCCTGATACAGACTACAGCACACACTAGTCCCCCAC
TAGCTGCAGGGAAGGGACAAACCAGCAGAGTTAGGAGGGTCTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000001 | genome | Sc0000001:1743023..1749412 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90963_cuf1 |
| Biotype | protein_coding |
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