transcript:BL90878_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL90878_cuf0
Unique Nametranscript:BL90878_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL90878_cuf0

>transcript:BL90878_cuf0-protein ID=transcript:BL90878_cuf0-protein|Name=transcript:BL90878_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=182bp
AEELDTAISNLKNNKSSSSDMITNEMFKCGKPVLQKPLLHLFNSCLQNGY
FPDEWSLSHIVPIHKSGDTSLPDNYRGISIISCLGKLFTSILNNRLVNYA
EQNSLFKPQQAGFRKKYRTSDNLFVLTTLVSKYLSKNARIYACFVDFSKA
FDSVWRAGLLFKLNNLGIGGKFLTTIKNMYSK
Run BLAST on NCBI

mRNA from alignment at Sc0000311:162111..162658+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL90878_cuf0 ID=transcript:BL90878_cuf0|Name=transcript:BL90878_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=548bp|location=Sequence derived from alignment at Sc0000311:162111..162658+ (Branchiostoma lanceolatum)
CAGCTGAGGAACTAGACACAGCCATTTCAAACCTAAAAAATAACAAATCC
AGTAGCAGCGACATGATAACAAACGAAATGTTCAAATGCGGTAAACCAGT
CCTACAGAAACCATTACTCCACTTATTCAACTCATGCTTACAAAACGGTT
ACTTCCCCGACGAATGGTCTCTCAGTCATATCGTTCCCATACATAAATCT
GGCGACACATCACTCCCTGACAATTACCGGGGAATTTCTATTATTAGTTG
TTTGGGGAAATTATTCACCTCTATTTTGAACAACCGTCTTGTGAATTATG
CGGAACAGAACAGCCTTTTCAAACCTCAACAGGCCGGTTTTAGAAAGAAA
TATAGGACATCTGATAATTTATTTGTTTTGACTACTTTAGTCAGCAAATA
CCTCAGTAAAAATGCTCGAATTTATGCATGCTTTGTAGATTTCAGCAAAG
CTTTCGACTCCGTTTGGCGAGCTGGTCTACTGTTCAAATTAAACAACCTT
GGAATAGGAGGAAAGTTCTTAACGACCATAAAAAACATGTATTCAAAA

Coding sequence (CDS) from alignment at Sc0000311:162111..162658+

>transcript:BL90878_cuf0 ID=transcript:BL90878_cuf0|Name=transcript:BL90878_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=546bp|location=Sequence derived from alignment at Sc0000311:162111..162658+ (Branchiostoma lanceolatum)
GCTGAGGAACTAGACACAGCCATTTCAAACCTAAAAAATAACAAATCCAG
TAGCAGCGACATGATAACAAACGAAATGTTCAAATGCGGTAAACCAGTCC
TACAGAAACCATTACTCCACTTATTCAACTCATGCTTACAAAACGGTTAC
TTCCCCGACGAATGGTCTCTCAGTCATATCGTTCCCATACATAAATCTGG
CGACACATCACTCCCTGACAATTACCGGGGAATTTCTATTATTAGTTGTT
TGGGGAAATTATTCACCTCTATTTTGAACAACCGTCTTGTGAATTATGCG
GAACAGAACAGCCTTTTCAAACCTCAACAGGCCGGTTTTAGAAAGAAATA
TAGGACATCTGATAATTTATTTGTTTTGACTACTTTAGTCAGCAAATACC
TCAGTAAAAATGCTCGAATTTATGCATGCTTTGTAGATTTCAGCAAAGCT
TTCGACTCCGTTTGGCGAGCTGGTCTACTGTTCAAATTAAACAACCTTGG
AATAGGAGGAAAGTTCTTAACGACCATAAAAAACATGTATTCAAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL90878gene:BL90878Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL90878_cuf0-E1BL90878_cuf0-E1-1564476830-432816Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL90878_cuf0transcript:BL90878_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000311genomeSc0000311:162111..162658 +
Properties
Property NameValue
Transcript idBL90878_cuf0
Biotypeprotein_coding