transcript:BL90057_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL90057_cuf0
Unique Nametranscript:BL90057_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL90057_cuf0

>transcript:BL90057_cuf0-protein ID=transcript:BL90057_cuf0-protein|Name=transcript:BL90057_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=188bp
RLYSCFIDFRKAFDTVWREGLRFKLLNSGIGGNFYKLIKCLYSKPETCVK
TKSGLTPPFVTDKGVRQGCNMSPTLFNLFINDLVKELDNLECMPPTLYNL
YVSCLLYADDVVIFSESDKGLQSAINRLSAFCSKWKLQVNMKKTKVIIFN
KAGRSFPKQKFYFENNTIDNVPSYCYLGLTLTSSGSFT
Run BLAST on NCBI

mRNA from alignment at Sc0000076:882011..882576+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL90057_cuf0 ID=transcript:BL90057_cuf0|Name=transcript:BL90057_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=566bp|location=Sequence derived from alignment at Sc0000076:882011..882576+ (Branchiostoma lanceolatum)
AACGCCTTTATTCATGTTTTATAGATTTTAGAAAAGCATTTGACACAGTT
TGGAGGGAAGGGCTCCGTTTCAAATTGCTAAATTCAGGAATAGGAGGGAA
TTTCTATAAGTTAATCAAATGTTTATATAGTAAACCTGAAACTTGTGTAA
AAACAAAATCTGGTCTAACACCACCATTTGTGACCGACAAGGGTGTCCGT
CAGGGTTGCAACATGAGCCCCACCCTTTTTAATTTATTTATTAATGATTT
AGTTAAAGAGTTAGATAACTTAGAGTGTATGCCACCAACTTTATATAATC
TTTATGTTTCATGTTTATTGTATGCAGATGATGTTGTTATATTTTCAGAA
TCAGACAAAGGTCTGCAATCTGCAATTAACAGACTAAGTGCCTTTTGTAG
CAAATGGAAGCTCCAAGTAAATATGAAGAAAACAAAAGTAATCATATTTA
ACAAGGCAGGTCGTTCTTTTCCAAAGCAAAAGTTCTACTTTGAAAATAAC
ACAATAGACAATGTCCCCTCCTATTGCTATTTAGGCCTAACCCTCACATC
ATCAGGTAGCTTCACC

Coding sequence (CDS) from alignment at Sc0000076:882011..882576+

>transcript:BL90057_cuf0 ID=transcript:BL90057_cuf0|Name=transcript:BL90057_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=564bp|location=Sequence derived from alignment at Sc0000076:882011..882576+ (Branchiostoma lanceolatum)
CGCCTTTATTCATGTTTTATAGATTTTAGAAAAGCATTTGACACAGTTTG
GAGGGAAGGGCTCCGTTTCAAATTGCTAAATTCAGGAATAGGAGGGAATT
TCTATAAGTTAATCAAATGTTTATATAGTAAACCTGAAACTTGTGTAAAA
ACAAAATCTGGTCTAACACCACCATTTGTGACCGACAAGGGTGTCCGTCA
GGGTTGCAACATGAGCCCCACCCTTTTTAATTTATTTATTAATGATTTAG
TTAAAGAGTTAGATAACTTAGAGTGTATGCCACCAACTTTATATAATCTT
TATGTTTCATGTTTATTGTATGCAGATGATGTTGTTATATTTTCAGAATC
AGACAAAGGTCTGCAATCTGCAATTAACAGACTAAGTGCCTTTTGTAGCA
AATGGAAGCTCCAAGTAAATATGAAGAAAACAAAAGTAATCATATTTAAC
AAGGCAGGTCGTTCTTTTCCAAAGCAAAAGTTCTACTTTGAAAATAACAC
AATAGACAATGTCCCCTCCTATTGCTATTTAGGCCTAACCCTCACATCAT
CAGGTAGCTTCACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL90057gene:BL90057Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL90057_cuf0-E1BL90057_cuf0-E1-1564476830-272360Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL90057_cuf0transcript:BL90057_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000076genomeSc0000076:882011..882576 +
Properties
Property NameValue
Transcript idBL90057_cuf0
Biotypeprotein_coding