transcript:BL89952_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL89952_cuf0
Unique Nametranscript:BL89952_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL89952_cuf0

>transcript:BL89952_cuf0-protein ID=transcript:BL89952_cuf0-protein|Name=transcript:BL89952_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=180bp
RTAVRSYLSVHMRKHTGNKPYKCDQCDYSAAQKGTLDQHIMIKHTGEKPY
MCGECGFRTAVRSNLSQHMKAHAGVLKRTFKCDQCEYSSAQKVHLDQHII
AKHTGEKPYKCDQCDYSAVQKVHLDQHVKTKHTDEKPYMCEECGYRTAIR
FCLTQHKRIHTGEKPFKCDYCDYSAARKAN
Run BLAST on NCBI

mRNA from alignment at xfSc0035862:1..542-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL89952_cuf0 ID=transcript:BL89952_cuf0|Name=transcript:BL89952_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=542bp|location=Sequence derived from alignment at xfSc0035862:1..542- (Branchiostoma lanceolatum)
CAGGACGGCTGTAAGGTCCTACCTATCTGTACATATGAGAAAACATACCG
GCAACAAGCCCTACAAATGTGACCAGTGCGACTATTCTGCTGCACAGAAA
GGCACTTTAGATCAACACATCATGATAAAACATACTGGTGAGAAGCCCTA
CATGTGTGGGGAGTGCGGATTCAGAACGGCTGTTAGGTCCAACCTAAGCC
AACACATGAAGGCACACGCTGGTGTCTTAAAAAGAACCTTCAAATGTGAC
CAGTGTGAATATTCTTCTGCACAGAAAGTCCACTTAGACCAACACATCAT
CGCAAAACACACCGGTGAGAAACCCTACAAATGTGACCAGTGCGACTATT
CTGCTGTACAGAAAGTCCATTTAGACCAACACGTCAAGACAAAACACACC
GATGAGAAACCCTACATGTGTGAGGAGTGTGGATACAGGACGGCTATTAG
GTTTTGCTTAACCCAGCATAAGAGAATACACACCGGCGAGAAACCCTTTA
AATGTGACTATTGCGACTATTCTGCAGCACGGAAAGCTAATA

Coding sequence (CDS) from alignment at xfSc0035862:1..542-

>transcript:BL89952_cuf0 ID=transcript:BL89952_cuf0|Name=transcript:BL89952_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=540bp|location=Sequence derived from alignment at xfSc0035862:1..542- (Branchiostoma lanceolatum)
AGGACGGCTGTAAGGTCCTACCTATCTGTACATATGAGAAAACATACCGG
CAACAAGCCCTACAAATGTGACCAGTGCGACTATTCTGCTGCACAGAAAG
GCACTTTAGATCAACACATCATGATAAAACATACTGGTGAGAAGCCCTAC
ATGTGTGGGGAGTGCGGATTCAGAACGGCTGTTAGGTCCAACCTAAGCCA
ACACATGAAGGCACACGCTGGTGTCTTAAAAAGAACCTTCAAATGTGACC
AGTGTGAATATTCTTCTGCACAGAAAGTCCACTTAGACCAACACATCATC
GCAAAACACACCGGTGAGAAACCCTACAAATGTGACCAGTGCGACTATTC
TGCTGTACAGAAAGTCCATTTAGACCAACACGTCAAGACAAAACACACCG
ATGAGAAACCCTACATGTGTGAGGAGTGTGGATACAGGACGGCTATTAGG
TTTTGCTTAACCCAGCATAAGAGAATACACACCGGCGAGAAACCCTTTAA
ATGTGACTATTGCGACTATTCTGCAGCACGGAAAGCTAAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL89952gene:BL89952Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL89952_cuf0-E1BL89952_cuf0-E1-1564476830-548832Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL89952_cuf0transcript:BL89952_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0035862genomexfSc0035862:1..542 -
Properties
Property NameValue
Transcript idBL89952_cuf0
Biotypeprotein_coding