transcript:BL89854_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL89854_cuf0
Unique Nametranscript:BL89854_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL89854_cuf0

>transcript:BL89854_cuf0-protein ID=transcript:BL89854_cuf0-protein|Name=transcript:BL89854_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=105bp
MTVMRILIYTHKGSFNIHGIELHIKHSMVYAHKFLCQFLSHVSHCCKKKR
VRATLDRSCLKLSGRYSLAAAILSYNCANAKSPQPTSMAYQSTNTPQFSD
KPAQC
Run BLAST on NCBI

mRNA from alignment at Sc0001730:1785..2540+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL89854_cuf0 ID=transcript:BL89854_cuf0|Name=transcript:BL89854_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=756bp|location=Sequence derived from alignment at Sc0001730:1785..2540+ (Branchiostoma lanceolatum)
GTTAGGCCACACCATCTTGATTTTATGGATGACATCCTCTGGAGACCCCA
AAACTAATGCGCGCGGGCGAAAAAAGAAAAATCCAGCAAAAAAAAAAAAT
GCTGCTTAACCACAGGACTACTAGTACAAAGCTGGTAGTGCGAATTGAAC
CACAGAACACAGTTTATTTGTAGGAGGTACATTTAGGTTGTCTTGTTCAT
CATAGCAGACTCAGCGCAAGTGATTGATTTTTAATATATTGACAAGAACG
ACCAAAGAAGTATACTATTAGAAGGTATTTGGCTCCAAGGACTGTGGATG
ATATATTCATGACTGTGATGAGAATACTCATATACACCCATAAGGGTAGT
TTCAACATACATGGCATTGAACTCCATATTAAGCATTCCATGGTTTACGC
TCACAAATTCCTCTGCCAATTCCTCTCCCATGTCTCTCATTGTTGCAAAA
AGAAACGTGTGAGAGCCACTCTGGATAGGTCGTGTTTGAAATTGTCTGGG
CGATACTCGCTGGCCGCCGCGATCCTCTCGTACAACTGTGCAAACGCAAA
ATCCCCCCAGCCAACATCGATGGCATACCAATCCACAAATACGCCCCAGT
TTTCCGATAAGCCGGCACAATGCTAGCCTTTTGCGGCAATCTAAGTCGGC
AAGTTCCGGAGTTCTGTGTAGCCTTGGAGGAGGTGACTTTTTTTTTTTGG
TGACAACAGGTGAAAATCAATGCGCGCGCGGATGTCATCCATAAGATTAA
GTTGGT

Coding sequence (CDS) from alignment at Sc0001730:1785..2540+

>transcript:BL89854_cuf0 ID=transcript:BL89854_cuf0|Name=transcript:BL89854_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=318bp|location=Sequence derived from alignment at Sc0001730:1785..2540+ (Branchiostoma lanceolatum)
ATGACTGTGATGAGAATACTCATATACACCCATAAGGGTAGTTTCAACAT
ACATGGCATTGAACTCCATATTAAGCATTCCATGGTTTACGCTCACAAAT
TCCTCTGCCAATTCCTCTCCCATGTCTCTCATTGTTGCAAAAAGAAACGT
GTGAGAGCCACTCTGGATAGGTCGTGTTTGAAATTGTCTGGGCGATACTC
GCTGGCCGCCGCGATCCTCTCGTACAACTGTGCAAACGCAAAATCCCCCC
AGCCAACATCGATGGCATACCAATCCACAAATACGCCCCAGTTTTCCGAT
AAGCCGGCACAATGCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL89854gene:BL89854Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL89854_cuf0-E1BL89854_cuf0-E1-1564476830-510700Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL89854_cuf0transcript:BL89854_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0001730genomeSc0001730:1785..2540 +
Properties
Property NameValue
Transcript idBL89854_cuf0
Biotypeprotein_coding