transcript:BL89755_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL89755_cuf0
Unique Nametranscript:BL89755_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL89755_cuf0

>transcript:BL89755_cuf0-protein ID=transcript:BL89755_cuf0-protein|Name=transcript:BL89755_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=187bp
HCYSKGEIPSDWHKGIIVPIHKSGDVKDLNNYRGITLTSCVCKIFNKVIE
SQLSDFLEKNNILGEIQGAFRKDRRPEDHIFSLKGLNAIRKSYGKPTYMA
FLDLSKAFDLVWRDGLKFVLAQNGISGKAWNIIDKIYEKVENKVMFDDLE
TDYFDSDIGVKQGCVLSPILFCLYMNELAKSLKLHGL
Run BLAST on NCBI

mRNA from alignment at Sc0000375:185508..186070-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL89755_cuf0 ID=transcript:BL89755_cuf0|Name=transcript:BL89755_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=563bp|location=Sequence derived from alignment at Sc0000375:185508..186070- (Branchiostoma lanceolatum)
ACACTGTTACAGCAAGGGCGAGATTCCGTCAGACTGGCACAAAGGTATAA
TAGTTCCAATACATAAAAGTGGAGATGTGAAAGATCTTAACAATTACAGA
GGCATAACTCTTACATCATGTGTTTGCAAAATCTTCAACAAGGTAATTGA
ATCACAATTGTCCGACTTCCTGGAAAAGAATAACATCCTAGGGGAAATAC
AAGGGGCCTTCAGGAAAGACAGACGGCCAGAGGATCACATCTTTAGCTTA
AAGGGACTAAACGCGATCCGCAAATCTTATGGTAAACCCACTTACATGGC
TTTCTTGGACCTCTCCAAGGCCTTTGATCTAGTTTGGCGTGATGGACTAA
AATTCGTACTAGCACAAAATGGGATCAGTGGAAAGGCGTGGAATATTATA
GATAAGATTTATGAGAAAGTAGAAAACAAAGTTATGTTCGACGACCTAGA
GACAGACTACTTTGATTCAGATATTGGTGTTAAGCAAGGCTGTGTCCTGT
CCCCTATTCTGTTCTGCCTTTACATGAACGAACTAGCGAAATCCTTAAAA
CTTCACGGCCTTG

Coding sequence (CDS) from alignment at Sc0000375:185508..186070-

>transcript:BL89755_cuf0 ID=transcript:BL89755_cuf0|Name=transcript:BL89755_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=561bp|location=Sequence derived from alignment at Sc0000375:185508..186070- (Branchiostoma lanceolatum)
CACTGTTACAGCAAGGGCGAGATTCCGTCAGACTGGCACAAAGGTATAAT
AGTTCCAATACATAAAAGTGGAGATGTGAAAGATCTTAACAATTACAGAG
GCATAACTCTTACATCATGTGTTTGCAAAATCTTCAACAAGGTAATTGAA
TCACAATTGTCCGACTTCCTGGAAAAGAATAACATCCTAGGGGAAATACA
AGGGGCCTTCAGGAAAGACAGACGGCCAGAGGATCACATCTTTAGCTTAA
AGGGACTAAACGCGATCCGCAAATCTTATGGTAAACCCACTTACATGGCT
TTCTTGGACCTCTCCAAGGCCTTTGATCTAGTTTGGCGTGATGGACTAAA
ATTCGTACTAGCACAAAATGGGATCAGTGGAAAGGCGTGGAATATTATAG
ATAAGATTTATGAGAAAGTAGAAAACAAAGTTATGTTCGACGACCTAGAG
ACAGACTACTTTGATTCAGATATTGGTGTTAAGCAAGGCTGTGTCCTGTC
CCCTATTCTGTTCTGCCTTTACATGAACGAACTAGCGAAATCCTTAAAAC
TTCACGGCCTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL89755gene:BL89755Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL89755_cuf0-E1BL89755_cuf0-E1-1564476830-452166Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL89755_cuf0transcript:BL89755_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000375genomeSc0000375:185508..186070 -
Properties
Property NameValue
Transcript idBL89755_cuf0
Biotypeprotein_coding