|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL89705_cuf0 >transcript:BL89705_cuf0-protein ID=transcript:BL89705_cuf0-protein|Name=transcript:BL89705_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=884bp
RNQARKNMTKVITSDGIEKTDPQEILNEQVKFFSGLYSFEEPPTPLDSNM
FETFFPKPVPVSLSEEQRDSCEGLITERELKEAISSFSAGRSPGLDGLPI
DFYTTFYNILKQPMLDTFNYAFRSGHLSETQKVGLISLLLKQDATGQDKE
PTNLKNWRPLTLLNCDVRILSKCIGLRMKNSMPHLISYDQTGFLQGRNIG
DSIRRILEIMEFYDTHEKPGLLFIADFEKAFDKIRRDFILKVLDYVGFGR
SLIQWINVLYQDISSKVINYGYISRAFPLVRGVRQGCPLSPYLFILGLEV
LSNKIRNNIEIEGLITHGIETKISQFADDANFPLAPKLATVYAVIRDLEG
FALLSGLVANFEKCKVVRIGSLKGSDFVLPCAWPIQWTDGPFDILGIHIP
QNFSELVSINFDRKLVKMDRILQPWKGKALSLFGKVTLVNTLIVSQFIYL
FNSLPTPPATFFKQYEKKIFKFLWGSGPERVKRKTIYNIQEQGGLKLRNL
LAVDRTIKASWMPKLYLNKNWFCSKVLFMSSPILRTNFLPFVQLKPQNFE
DLLGKKVISTFFCQVIQYWLKFQLRPPENAVEIKQQLLGLNSYICIGDKP
FFNTIFHNRGVFFINDILDSANRTLSFENFVLKFGDDVCSALQYDQLISA
IPSQWKNLLRQESPNLQVCIPFCRNIKWLKNRKVNKALYFFFMSEAKLWE
PSFNIQYSWEDYFNTPIPWQQVYNLIYKISIDSKTRIFQYKLLFKFLASN
QKLYTWGLVDSPLCSLCKEEEETVIHLFSDCHIVSAFWTQVNNWFVNHMG
TYLNMTTFSIIFGNLSKHCTVLSNLFIVLGKIYIFRNRHSVLRLSSFISF
VADVCKLEYIIAKRGGNTQKHIGKWGKFYLGNFA Run BLAST on NCBI mRNA from alignment at Sc0000901:819..3791- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL89705_cuf0 ID=transcript:BL89705_cuf0|Name=transcript:BL89705_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2973bp|location=Sequence derived from alignment at Sc0000901:819..3791- (Branchiostoma lanceolatum)
GAGAAATCAAGCTAGAAAAAACATGACAAAAGTTATTACCTCAGATGGTA
TTGAAAAAACAGATCCACAAGAAATTTTAAATGAACAAGTGAAATTTTTC
TCCGGTCTTTATTCTTTTGAAGAACCTCCGACACCTCTAGATAGCAATAT
GTTTGAAACTTTTTTTCCTAAGCCAGTACCTGTTAGCTTATCTGAAGAGC
AACGGGATAGTTGTGAAGGCTTAATAACAGAAAGAGAGCTTAAAGAAGCA
ATTTCGTCCTTTTCGGCCGGGAGATCACCCGGATTAGATGGACTACCAAT
TGATTTCTATACAACATTTTACAATATTCTTAAACAACCCATGCTAGATA
CATTTAATTATGCATTTCGCTCAGGCCATCTTTCTGAAACTCAAAAAGTC
GGACTAATTTCATTATTACTGAAACAGGATGCCACAGGACAGGACAAAGA
ACCCACAAATCTAAAAAATTGGCGTCCACTAACTTTATTAAACTGTGATG
TTCGAATATTATCGAAATGTATCGGCCTGCGCATGAAAAATAGTATGCCA
CATTTGATTTCATATGACCAAACAGGTTTTTTGCAAGGGAGAAATATTGG
GGATAGTATAAGAAGAATACTGGAAATTATGGAATTTTATGACACACATG
AAAAACCAGGGTTACTCTTTATTGCAGATTTCGAGAAGGCCTTTGACAAG
ATTAGAAGGGATTTCATTTTGAAAGTACTAGATTATGTTGGCTTTGGAAG
ATCATTGATACAATGGATAAATGTGTTATATCAAGATATTTCGAGTAAAG
TTATCAACTATGGATATATATCCAGAGCATTCCCTCTGGTTCGCGGGGTC
CGGCAAGGCTGTCCCCTATCCCCTTATCTCTTCATTTTAGGACTAGAAGT
TTTATCAAACAAAATTAGAAATAATATCGAAATAGAAGGTCTAATAACTC
ATGGTATCGAAACTAAAATTTCACAGTTTGCGGACGATGCAAATTTTCCT
TTGGCTCCGAAACTTGCAACCGTTTATGCGGTGATAAGAGACTTAGAAGG
CTTTGCACTGTTATCTGGTTTAGTAGCAAATTTCGAAAAATGTAAAGTAG
TACGTATAGGCTCTCTTAAGGGGTCAGACTTTGTCTTACCGTGTGCATGG
CCCATACAGTGGACAGATGGTCCGTTCGACATTTTAGGTATACACATTCC
ACAAAACTTTTCAGAACTTGTATCAATCAACTTTGATCGAAAACTTGTAA
AAATGGATAGAATATTACAGCCCTGGAAAGGGAAAGCACTGTCCCTTTTT
GGGAAAGTAACCCTAGTGAACACATTAATAGTCTCCCAATTTATATATTT
ATTTAATTCACTTCCAACCCCACCTGCCACTTTCTTTAAACAATACGAAA
AAAAAATCTTCAAGTTCTTATGGGGAAGTGGCCCAGAGAGAGTTAAAAGA
AAAACCATTTACAATATCCAAGAACAAGGTGGACTCAAGCTCCGAAATCT
TCTAGCTGTAGATCGAACTATAAAAGCATCTTGGATGCCAAAATTGTATT
TGAATAAAAACTGGTTTTGTTCAAAAGTGTTGTTTATGTCGAGTCCGATT
CTAAGGACGAATTTCCTTCCCTTTGTGCAGCTTAAACCTCAAAACTTTGA
AGATTTGTTGGGGAAAAAAGTGATTAGTACATTTTTTTGTCAAGTTATAC
AATATTGGTTGAAATTCCAATTACGACCTCCTGAGAATGCAGTGGAAATC
AAACAGCAACTTTTGGGTTTAAATTCGTATATATGTATTGGGGACAAACC
CTTCTTTAACACTATATTTCATAATAGGGGAGTATTCTTCATCAATGATA
TTTTAGACTCAGCAAATAGAACTTTATCTTTTGAAAATTTTGTGTTGAAA
TTTGGAGATGATGTTTGTTCCGCATTACAATATGATCAATTAATCTCGGC
CATCCCTTCTCAGTGGAAAAACTTACTTAGACAAGAGTCCCCAAATCTAC
AGGTCTGTATCCCTTTCTGTAGAAATATAAAATGGCTTAAAAACAGAAAG
GTTAATAAGGCCCTTTATTTCTTTTTCATGTCCGAAGCTAAATTATGGGA
ACCTTCTTTTAACATTCAGTATTCATGGGAAGACTATTTTAACACCCCAA
TACCCTGGCAACAGGTGTATAACTTAATATATAAGATAAGTATAGATTCG
AAGACTCGTATATTTCAATATAAATTATTATTCAAATTCTTAGCATCAAA
TCAAAAATTATACACATGGGGACTAGTAGACTCACCACTTTGTAGTTTGT
GTAAAGAAGAGGAAGAAACGGTTATACACCTGTTCTCTGACTGTCATATT
GTATCAGCCTTTTGGACTCAAGTAAACAACTGGTTTGTTAATCATATGGG
AACCTATCTAAACATGACAACATTTAGTATAATTTTTGGTAATTTGAGTA
AACACTGTACAGTCCTATCCAATTTGTTCATTGTGTTAGGTAAAATCTAC
ATCTTTAGAAACCGTCATTCTGTACTTAGATTGTCTTCCTTTATCTCCTT
TGTTGCCGATGTCTGTAAGTTAGAATACATAATAGCAAAGAGAGGGGGGA
ATACACAGAAACATATAGGAAAATGGGGTAAATTTTATCTTGGAAACTTT
GCATAGTTAGTTTTAAGATTGTCAAACAGCCACCAAGTTATCATGTTTTT
CCTTTGTTGTGATCCTTTATTTGTTATGAGTTTTCTTAGGAAATATTTGA
TTTGATTAAGGATCAATGTTATCTTTATTTGATTGAGTCTGTTACCACAA
GCAATGTTATTTTGAAGGTAACTTGTTACCTCTTTCTTTCTTGTTTGATT
CAAAAGCTTTGTTAAGCTAAATATTTATGTATTTCTTGTTGATTTGCTCT
ATAAGGTTTTCATACAGATTATGATGTTAATTTTGCGATGGTTTATTTGA
CTATGTGCCATACATGTGTGTGT Coding sequence (CDS) from alignment at Sc0000901:819..3791- >transcript:BL89705_cuf0 ID=transcript:BL89705_cuf0|Name=transcript:BL89705_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2655bp|location=Sequence derived from alignment at Sc0000901:819..3791- (Branchiostoma lanceolatum)
AGAAATCAAGCTAGAAAAAACATGACAAAAGTTATTACCTCAGATGGTAT
TGAAAAAACAGATCCACAAGAAATTTTAAATGAACAAGTGAAATTTTTCT
CCGGTCTTTATTCTTTTGAAGAACCTCCGACACCTCTAGATAGCAATATG
TTTGAAACTTTTTTTCCTAAGCCAGTACCTGTTAGCTTATCTGAAGAGCA
ACGGGATAGTTGTGAAGGCTTAATAACAGAAAGAGAGCTTAAAGAAGCAA
TTTCGTCCTTTTCGGCCGGGAGATCACCCGGATTAGATGGACTACCAATT
GATTTCTATACAACATTTTACAATATTCTTAAACAACCCATGCTAGATAC
ATTTAATTATGCATTTCGCTCAGGCCATCTTTCTGAAACTCAAAAAGTCG
GACTAATTTCATTATTACTGAAACAGGATGCCACAGGACAGGACAAAGAA
CCCACAAATCTAAAAAATTGGCGTCCACTAACTTTATTAAACTGTGATGT
TCGAATATTATCGAAATGTATCGGCCTGCGCATGAAAAATAGTATGCCAC
ATTTGATTTCATATGACCAAACAGGTTTTTTGCAAGGGAGAAATATTGGG
GATAGTATAAGAAGAATACTGGAAATTATGGAATTTTATGACACACATGA
AAAACCAGGGTTACTCTTTATTGCAGATTTCGAGAAGGCCTTTGACAAGA
TTAGAAGGGATTTCATTTTGAAAGTACTAGATTATGTTGGCTTTGGAAGA
TCATTGATACAATGGATAAATGTGTTATATCAAGATATTTCGAGTAAAGT
TATCAACTATGGATATATATCCAGAGCATTCCCTCTGGTTCGCGGGGTCC
GGCAAGGCTGTCCCCTATCCCCTTATCTCTTCATTTTAGGACTAGAAGTT
TTATCAAACAAAATTAGAAATAATATCGAAATAGAAGGTCTAATAACTCA
TGGTATCGAAACTAAAATTTCACAGTTTGCGGACGATGCAAATTTTCCTT
TGGCTCCGAAACTTGCAACCGTTTATGCGGTGATAAGAGACTTAGAAGGC
TTTGCACTGTTATCTGGTTTAGTAGCAAATTTCGAAAAATGTAAAGTAGT
ACGTATAGGCTCTCTTAAGGGGTCAGACTTTGTCTTACCGTGTGCATGGC
CCATACAGTGGACAGATGGTCCGTTCGACATTTTAGGTATACACATTCCA
CAAAACTTTTCAGAACTTGTATCAATCAACTTTGATCGAAAACTTGTAAA
AATGGATAGAATATTACAGCCCTGGAAAGGGAAAGCACTGTCCCTTTTTG
GGAAAGTAACCCTAGTGAACACATTAATAGTCTCCCAATTTATATATTTA
TTTAATTCACTTCCAACCCCACCTGCCACTTTCTTTAAACAATACGAAAA
AAAAATCTTCAAGTTCTTATGGGGAAGTGGCCCAGAGAGAGTTAAAAGAA
AAACCATTTACAATATCCAAGAACAAGGTGGACTCAAGCTCCGAAATCTT
CTAGCTGTAGATCGAACTATAAAAGCATCTTGGATGCCAAAATTGTATTT
GAATAAAAACTGGTTTTGTTCAAAAGTGTTGTTTATGTCGAGTCCGATTC
TAAGGACGAATTTCCTTCCCTTTGTGCAGCTTAAACCTCAAAACTTTGAA
GATTTGTTGGGGAAAAAAGTGATTAGTACATTTTTTTGTCAAGTTATACA
ATATTGGTTGAAATTCCAATTACGACCTCCTGAGAATGCAGTGGAAATCA
AACAGCAACTTTTGGGTTTAAATTCGTATATATGTATTGGGGACAAACCC
TTCTTTAACACTATATTTCATAATAGGGGAGTATTCTTCATCAATGATAT
TTTAGACTCAGCAAATAGAACTTTATCTTTTGAAAATTTTGTGTTGAAAT
TTGGAGATGATGTTTGTTCCGCATTACAATATGATCAATTAATCTCGGCC
ATCCCTTCTCAGTGGAAAAACTTACTTAGACAAGAGTCCCCAAATCTACA
GGTCTGTATCCCTTTCTGTAGAAATATAAAATGGCTTAAAAACAGAAAGG
TTAATAAGGCCCTTTATTTCTTTTTCATGTCCGAAGCTAAATTATGGGAA
CCTTCTTTTAACATTCAGTATTCATGGGAAGACTATTTTAACACCCCAAT
ACCCTGGCAACAGGTGTATAACTTAATATATAAGATAAGTATAGATTCGA
AGACTCGTATATTTCAATATAAATTATTATTCAAATTCTTAGCATCAAAT
CAAAAATTATACACATGGGGACTAGTAGACTCACCACTTTGTAGTTTGTG
TAAAGAAGAGGAAGAAACGGTTATACACCTGTTCTCTGACTGTCATATTG
TATCAGCCTTTTGGACTCAAGTAAACAACTGGTTTGTTAATCATATGGGA
ACCTATCTAAACATGACAACATTTAGTATAATTTTTGGTAATTTGAGTAA
ACACTGTACAGTCCTATCCAATTTGTTCATTGTGTTAGGTAAAATCTACA
TCTTTAGAAACCGTCATTCTGTACTTAGATTGTCTTCCTTTATCTCCTTT
GTTGCCGATGTCTGTAAGTTAGAATACATAATAGCAAAGAGAGGGGGGAA
TACACAGAAACATATAGGAAAATGGGGTAAATTTTATCTTGGAAACTTTG
CATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000901 | genome | Sc0000901:819..3791 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL89705_cuf0 |
| Biotype | protein_coding |
|
