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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL89589_cuf0 >transcript:BL89589_cuf0-protein ID=transcript:BL89589_cuf0-protein|Name=transcript:BL89589_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=133bp
MRWTRKVSLFSMDLVLVPVHLGMHWCMAVLDMRNKCIKYYDSMGGKNNKG
INALRDYLQAEHKDKKGANLDLSGWTSQYPENIPQQMNGSDCGMFACKFA
EYASRDASINFDQKHMPYFRRRMVWEILHKKLL Run BLAST on NCBI mRNA from alignment at Sc0000128:388108..394645+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL89589_cuf0 ID=transcript:BL89589_cuf0|Name=transcript:BL89589_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6538bp|location=Sequence derived from alignment at Sc0000128:388108..394645+ (Branchiostoma lanceolatum)
GGAACAAGACATAAGTATGGAATAAAACTATTCACTACAACAAAATGACT
ATCTTAGGTTTTATATGATTCAAGTTGGGCTAATTATGAGTATCATTATT
TTTTCTAATAACAAAACAATTGAAATTGTAGGGAAAATCTCACAACAAAG
GAATTGAGATGAAATTATCCCCCCCCCCAAATGATGTGATGCAAATATTC
TATCAACCCAAAAATTGGCCCAAATATTTTGTATTCATTTTTTTTCATAC
ATACATCTTAGATTTTCTACTTCCTCACCTGGTTTGACCCTTGTTGCAAT
AATTCTCCGAAACAAATTGGATATTTCCTCCTTCGAAATCACGATATAAC
AGTAGAAGCTTCTGTTTTTCTGTTGTCTAACATATTGCTGTACCAACATA
ACGTATTGTAGTTGTCTAACGTATTGCGGTATCAACTGTTCTACAGGGTA
ACCTGAAGGTCCACGCGTTCAACACGTTCTTCTACACCAAGATCACCCAG
CAGGGGCCATCTTCAGTCATGAGGTGGACACGGAAAGTCAGCCTGTTCTC
CATGGACCTGGTGCTGGTACCGGTTCATCTGGGGATGCACTGGTGTATGG
CGGTAAGTATCTTAGACCCTTATCTTGATTCATACTGTAATATTCCTACT
TAAAGGGAGGCTAGACTTAAAATTATAAAGCCTATACTTTGCTAAATATA
CCAAAAAGTCAAGTTCTCACTTGTTTTACATAAGTCTGTCATAGTTCAGG
GCTCTCCGCTATTTGCAACTTGTGCCGTGCTGACTAGTGGTGCGGACCGG
TTCGGCCGGACCAGTTCCGGATTTGTAAAACGTTTCGGTTCAAGTAAAAA
AAAAACGAAACGCTGAGAACCGGTTCCGGACTTGTAAAAATAAATAGCAC
TTCTGTACATATGTACATCCTCTGTTTTGTTCTTAACTATCTAAAGCCTT
CCATAAATCACGAACTTTGTGACGGAAAAGACGCAAACATTTAGGTATCG
CTAAGTTGGCTTCTGAATGTCAGCAATTATTGAAATCTCGCAACTTCTCC
CGAGATGTGGGTGACGTCAGGGGAACCTAGCAATGTGATTGGCTTAGCCA
TGACATGGGTCACGTGGTTCCCAGTGGGCGCCATTTTGGACCTGACTTTC
TGACAAAGTCCTGCATTGCCGGGAATTGTAGCCGGGAATCTATTGCATGG
GGAATGGTGCATGTCACAGGGGGCAAGTCGGCAGTTTGTGACAAATTCCA
GCTGTGTATGGAAGTGATCCAGTGTGCCAGGGAACGTCAAAATATTTAGC
AAGGTAGCCAAGGCTCTTGAGACGGGACATGTACATGTAGGTCATCACGC
TTGGTAGAGAGCAGAATATACACGTTACGTTGTTCTGCAGTTGGTCTGTG
TGTGAATTATCTTTCCTTAGTTAAGAGGGCTTACAAGTCCGGACCTGAAC
CGAAACATCTGGACTTGAGTGCTGACGGCTACTCGCCTGATGATTGAAAC
AATCAATTGTAAGATCACAATGTTTGACATCGAGTTTCGGCATATCCCAA
CCAGAATGAATAGGGCTTTTTGATCCGGCTTTCCTGAGGATGGATTTCGA
AGAATTTTCCAACGAATTCGAGGAATCAACGAGTTTGTGTGCTTTGAATT
TGGAATGTAAAACATGTGAGAACTTAATCTTGGGGTACATTTAGCAAAGT
AGGCTTTTCAATTTTAAGTTCAGAATCCCTTTAAAGACACTAGGTATTTC
TGTTAGATAGACTTCACCTCTTTTTTCTTGAAAACTTTCCTTTATTGAAG
TCCGTTTTGGAATAAGTACTTTGCAGGTTTGACAAGTACAGTCACCACCC
ATAAAATTTCTTTCTTCATTGTGTTCAACACCTGATGTATTACAGAATTA
TAAGAAAAATATGATTTTGTTAAAATTATTATGTGTTTTGTTCAGGTGCT
GGACATGAGAAACAAGTGCATCAAGTACTATGACTCTATGGGCGGTAAGA
ACAACAAAGGCATCAATGCTCTTCGGTGAGTGAATACGAGAATTTTTCGT
CTTCTACTTGATGTATTGTTCACCATACATGTAGCTTCAATGTATCTAGG
CAATTTGTAATTACGGATAGTGCGTAGCCACGTGCATAAAAGTTATAAAT
GAATTTGGTTTCATGAATATTTCTAAAACTTCTTTTTGTTTTTTTACTTT
GTCAATAGCGACTACCTACAAGCAGAGCACAAAGACAAGAAAGGAGCAAA
CCTGGACTTGTCTGGTTGGACATCACAGTATCCAGAGGTAAAACTGTTTG
TTATTACCATCGCCAAGAAGGTTATGTTTTGCACAGCATGTGTGTGTGTT
TGTGTCCTTCTGTGTTCACGATAACTCAAGAATACCTGGATGAATTGTCT
TGATACTTGGTATATGGTTAGGTGTTGTTGAGACCTCAAAATGATCAGAT
TTTGTGCCTCCTAGCAACTTCCTATGGTACTGCAGCAGAACTTCTGATTT
TGATGTCTCGTGTTCTGAACATGCTATGGTCATGATTTTTGAGTGGTAGA
AACCGCTTGGGAGGAAAAGTAAGTCATGTAGGTTTGGGCCCCCTAGTTTC
TTTATGATTTTTTTTATGCGTCTTAGGTAAGAGTGTTTGTTGTCTTTAAT
TATTACCTCAATGAAAACAGAGGTTTGTAGTCTGTTGTTGTGTTTGTTTC
TGAGTTGCAGTAAACATGCATTGTCCTCGGTTCTGCATTTATCATTTGAA
TGCTAGGCACGTCAGGGACACTAAAAGGAAGTTACATGTTTGGGTCAAAG
TTGCCAAAATGGTCCCAGAAAGGTGACAGGAAATGGTGTTGGTCCCAGTC
CAGAGTTTTTCCCAATGAATATGGTAGTCAATTGGCCCAGATTCAGAGTA
AGCGCCTCAGTGTTTTCACAAAGGAGTAATAAGGCAAGGTCAAATCAAGA
AAATTCAAAAAAATCTGTAGACACTTTACGGAGGTTTGAGGTCTCTGAAC
TCTTGTTCTATCTGTTGCTGTTACACTAGACTCCAGTAGAATAGTGTTTC
TCTATGTAACACTAATGGAGATCTGAATAAAGGAAACAAACAAACAAACT
GATGTTGTGTTTCCTTGTCTCCACTGCAGAACATCCCGCAGCAGATGAAT
GGCAGCGACTGCGGAATGTTTGCCTGTAAGTTCGCCGAGTACGCAAGCCG
AGACGCCAGCATAAACTTTGACCAGGTAGGCACCCAGGGGGGGGAAAGGT
GACCGTCCCAGCAGTCATTGCAATACACATTCCACAATACACATGACCCA
GATGGCTGACTTTGCGCTACAAACCCATAGAGTTGTCGTGATGCCTTTGA
CAGTGCAGAAAATTTGTATTTTCCTAGAACGATCGTAGAGTGGAACTCGT
TGCAACCAAGTACCGTGGAAGCGTCCTCATTAGACAGCTTTAAACAATGC
ATGCAGTTAGATATGCGAAGGTTAGACGTGGCAGGTCGTGCGGCGTAATA
TAACCAGCTGCTGCTGTGCCGCGTGCCTGCGAAGCTGGTGTGTTACGCCG
AATGCCGGTTATACCGGCTATATATAGATACAGATACAGATAGCAACTGG
TACCATTTGATCAGTAGATTTTCTTTTCTTGAATTGTCAATAGACTAAAA
GAAGTTCATGAGACTGTCTGACTTTTGTAACTGATGTACACATCTTTAGG
TGTGCATTGTGGAATGTGTATTGCAATCATTGCTGTCCACTGTTTAGAAG
TTAGACAAACTGGATTATTATGTACGTAGGCTACATTAGCCATCACCCGT
TCTATTCAGAATGCCTTGTGTACTAAAGTACTAAAATGTGGTGTTGTGGG
GCGTAATGGCAGGATGGCCCAGAAGCCACAGGTCCCGGGTTCGTATCCAC
TAACATGCCCTGTCGACGTTGTCCCCTTGGGAAAATCACTTTACGCAAAT
TTCCTCGCTTCTATCGGGTAAAAATGTGCACCTTGCTTCAGTTACAGACA
TCCCTAGAATAGGATATTGAAAAGAGGTCCTGTATTTGAGGAGAGCCACA
CCTCAAGCATGTAAAAGAGCCCACCACACTCACCAAAAAAGTATGCGTCC
TTCCTGGCGTGAGTGGATCAAATAAATCTGTTAGGATATGTAGCTTGTAG
TCTTGGTGTGTTGCGCCATGAGACAGTTTACCGGGTATGCAATACAAACA
AACAAACAGTGTAACATTTGCGTTCAAGGATTTCTCATAAATGGTTTGGT
AGAGTTTTAGAGAATTTCAATAACATGAAGAATTTGTATATCCCCAAAAG
AAATTAAAGATTTGCCACCAAAATTCTACATTGAGCACTTTTAAGTACAG
CAATGACTAACAAGTATTGTATTTTTTCCTTGCAGAAACACATGCCCTAC
TTCAGAAGAAGAATGGTATGGGAAATACTCCACAAGAAATTGCTATAGTA
GCAGCAGTCCACTATGTGATCATCATGTAAATGTTCAAAATTTCTACAGA
AGTACATGTAGTTTCTGACAGTCATGTACTACCCTTCTATCAATGCCATG
CCATTTTCCGTTCGAGATTATTGTACAGTGTAAAGAATTATGCATACATT
AGTAGCCCATGGCAACATCTTTTGTTTACAACCAGTTGCTATGGCAATGG
ATCATGGCATAGAGATGACGAGAGCTTCCATTCTTCGGGGGTGGTTTCTG
GCAGTGGAAGAGAATTGTGGCATTGAAGAGTCCATGGAAATTTACTCAAA
AAATTCATATGTGAGAAATGATGCTAAGGGATTGGATTACAGAGTTAAGC
AGTACAGTCTACCTTAGAAATTGGTGTCACAACAAGGTTTTGTTCAAACT
CAATAGGTCTGTGTTTTTTGGAGGGACAATCCTAGAGAATAATACTAGGG
GCGGGTCACACAGTCCTTTGACTTCATACCAAACTATAGGTCCTTCAACG
GCCTTTCTTCAGTAAGACTAAAACGTCTTGACACATCCAAATCATTTAAT
CCTGTTTTTATTCTGTATGCAAATGCAGGAGAATGATACTTAGAATATGT
CAGTGCTCCATTAGAAAGTTCCAAACATGTTCAGAACTTGAAGAATTGCT
CAAACATAATGCATACATAAGTTACTTTCATACTACCATACATCTATAAT
AATACTTATTTTATTTCATGAGTAGAACTAACAGAAAATCACTCTGCACA
CATTGTACAAGACTCTTTGCAGCTCCTTGAAAAGAAACTTGTTATCCATG
TGCCAGAAAAAAAGCCTTTTCAACTGCCCAGTGTTGTGGCATTGCTAATG
AATTTGATGTAAATATTTGTAGACAAACCCAAATGCTTCTTGCCATTGTA
TATACGGTAAAGTGACTTCATTGGTGGCTTTTCGGAAGGGAATTGCCACT
GAAATTCGTTTTTTTTTTCAATACCTTGGAAGGTGAAAAGAGATATTTTG
TCCAAATGTATGCTACAGGGATTATTAAATTGTTTATGAAGAAAAAAAGA
TAAGTGTGAAAAAGTCATATATGGTTTTGGATGTTGTCTTCGCCTTTGAA
AATTGTGGAGCTCTTTGGTGATATGTATATAGCCAAGCTATGAAAAGTAG
TTGCCAAAATGATGCTTTTACATATTTTCTAGAATTACTGTTTAGCTATC
ATTATGACAAACATGTCAAAAGGTACCACTATAGTCAATAATTTAGTTTG
TTTTCCAAACATGCAAGCTAAGTGTTAATATAGTATTTCTTGTAAGTTGT
TTCCAAAAATGTTTAAGTTCTATATCCACACATGTCCAAAACAAGAAGCA
TAACTTTATTGTATTGTATATAATGATATTTCTCCTACCAGTCTTTTTGT
GATAACATAAATCTACAAAATATTTTCTTCATAATTATAGTGTACATGAT
ATCAATCAAAAGTAGTCTATTGGCTGTTCTGAAAGATATTACTTTATTTG
ACACTTCCAAGTCTTAACACATTATTTGTACAATGCATTACTTTTTGTGG
ACATCCTTTATGATATTTGTTTTAATACCACAGGGTTTGTTTCCTTGTCT
GTTCTGTTAATAAGTTATAACTTTGTTAATCAACATATCTGAGCAGTTTT
TTAACTGAACTAAATTAAGATGACAGCACAATTCACTTTATTTTTCATTT
CCAATTTGCAAAAAAAGACATTTAAATGACCTACAGTATTTTGTTGGCAA
TTGAAGCATTGAGAAATAAGGCGACAAAGTTTATAGTTATGTTTTACTTA
TGTCAGGGTTTGTTCCATAGTTCGTGTACAGTTTCTATATTATATATATT
CATAAACAAATCTCTTTACAGTTTGACTCATGCCATAGTTAGCATAACAG
TGTACAGTACAAGGAAACTTGCCTTAGTATGAGTGTATAATACATGATGT
TTTATGTACAGCGTGCGAAAAAGCCCACTGGACAAGACCTGAGGTTTCTT
GTTCAGTAAAACAATTGCTGTAAAAAGATCTTTTGTGATGATATGTTGTC
TACATTGGAATAAATCATTAAACATTGTGAGTTCGGGT Coding sequence (CDS) from alignment at Sc0000128:388108..394645+ >transcript:BL89589_cuf0 ID=transcript:BL89589_cuf0|Name=transcript:BL89589_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2010bp|location=Sequence derived from alignment at Sc0000128:388108..394645+ (Branchiostoma lanceolatum)
ATGAGGTGGACACGGAAAGTCAGCCTGTTCTCCATGGACCTGGTGCTGGT
ACCGGTTCATCTGGGGATGCACTGGTGTATGGCGGTGCTGGACATGAGAA
ACAAGTGCATCAAGTACTATGACTCTATGGGCGGTAAGAACAACAAAGGC
ATCAATGCTCTTCGCGACTACCTACAAGCAGAGCACAAAGACAAGAAAGG
AGCAAACCTGGACTTGTCTGGTTGGACATCACAGTATCCAGAGAACATCC
CGCAGCAGATGAATGGCAGCGACTGCGGAATGTTTGCCTGTAAGTTCGCC
GAGTACGCAAGCCGAGACGCCAGCATAAACTTTGACCAGAAACACATGCC
CTACTTCAGAAGAAGAATGGTATGGGAAATACTCCACAAGAAATTGCTAT
AGATGAGGTGGACACGGAAAGTCAGCCTGTTCTCCATGGACCTGGTGCTG
GTACCGGTTCATCTGGGGATGCACTGGTGTATGGCGGTGCTGGACATGAG
AAACAAGTGCATCAAGTACTATGACTCTATGGGCGGTAAGAACAACAAAG
GCATCAATGCTCTTCGCGACTACCTACAAGCAGAGCACAAAGACAAGAAA
GGAGCAAACCTGGACTTGTCTGGTTGGACATCACAGTATCCAGAGAACAT
CCCGCAGCAGATGAATGGCAGCGACTGCGGAATGTTTGCCTGTAAGTTCG
CCGAGTACGCAAGCCGAGACGCCAGCATAAACTTTGACCAGAAACACATG
CCCTACTTCAGAAGAAGAATGGTATGGGAAATACTCCACAAGAAATTGCT
ATAGATGAGGTGGACACGGAAAGTCAGCCTGTTCTCCATGGACCTGGTGC
TGGTACCGGTTCATCTGGGGATGCACTGGTGTATGGCGGTGCTGGACATG
AGAAACAAGTGCATCAAGTACTATGACTCTATGGGCGGTAAGAACAACAA
AGGCATCAATGCTCTTCGCGACTACCTACAAGCAGAGCACAAAGACAAGA
AAGGAGCAAACCTGGACTTGTCTGGTTGGACATCACAGTATCCAGAGAAC
ATCCCGCAGCAGATGAATGGCAGCGACTGCGGAATGTTTGCCTGTAAGTT
CGCCGAGTACGCAAGCCGAGACGCCAGCATAAACTTTGACCAGAAACACA
TGCCCTACTTCAGAAGAAGAATGGTATGGGAAATACTCCACAAGAAATTG
CTATAGATGAGGTGGACACGGAAAGTCAGCCTGTTCTCCATGGACCTGGT
GCTGGTACCGGTTCATCTGGGGATGCACTGGTGTATGGCGGTGCTGGACA
TGAGAAACAAGTGCATCAAGTACTATGACTCTATGGGCGGTAAGAACAAC
AAAGGCATCAATGCTCTTCGCGACTACCTACAAGCAGAGCACAAAGACAA
GAAAGGAGCAAACCTGGACTTGTCTGGTTGGACATCACAGTATCCAGAGA
ACATCCCGCAGCAGATGAATGGCAGCGACTGCGGAATGTTTGCCTGTAAG
TTCGCCGAGTACGCAAGCCGAGACGCCAGCATAAACTTTGACCAGAAACA
CATGCCCTACTTCAGAAGAAGAATGGTATGGGAAATACTCCACAAGAAAT
TGCTATAGATGAGGTGGACACGGAAAGTCAGCCTGTTCTCCATGGACCTG
GTGCTGGTACCGGTTCATCTGGGGATGCACTGGTGTATGGCGGTGCTGGA
CATGAGAAACAAGTGCATCAAGTACTATGACTCTATGGGCGGTAAGAACA
ACAAAGGCATCAATGCTCTTCGCGACTACCTACAAGCAGAGCACAAAGAC
AAGAAAGGAGCAAACCTGGACTTGTCTGGTTGGACATCACAGTATCCAGA
GAACATCCCGCAGCAGATGAATGGCAGCGACTGCGGAATGTTTGCCTGTA
AGTTCGCCGAGTACGCAAGCCGAGACGCCAGCATAAACTTTGACCAGAAA
CACATGCCCTACTTCAGAAGAAGAATGGTATGGGAAATACTCCACAAGAA
ATTGCTATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000128 | genome | Sc0000128:388108..394645 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL89589_cuf0 |
| Biotype | protein_coding |
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