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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL89543_cuf0 >transcript:BL89543_cuf0-protein ID=transcript:BL89543_cuf0-protein|Name=transcript:BL89543_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=195bp
MENSNLDVLEQNDFSEYCGEDWECLDEQRESLTKAFSWFRSEDNNARESG
NRVEVEKLPLHPGSQLSYGESMVLVMAFILSHHLTSSAVVDLLTLIGLHT
QYDSLFCTSKHLFDKFFSLRNVTFPVKRHYFCSACLTAVSSDDAVCSKCE
VNLSSERSTFYFLEMSIVSQLQAMFQSKSYDICTQLNFFCFIQFP Run BLAST on NCBI mRNA from alignment at Sc0000018:679276..686828+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL89543_cuf0 ID=transcript:BL89543_cuf0|Name=transcript:BL89543_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=7553bp|location=Sequence derived from alignment at Sc0000018:679276..686828+ (Branchiostoma lanceolatum)
TCCAAAATGGGCAGTCTGCAGTTGGACATCAAAACACTGACACAAATTTC
CCGCTTTTTTGGCTGAGGTAATGTGGGCCACATGTGTATTTGCATAATGT
TTGACCAACCAATCCCAGATCCTAAAGGAGTGAGTCATATCCGTAAGTGT
AAGTAATATGTCAAAGGGGACAACCATGTCTAATCAGAATTCAGATGGGA
TAGATTTTAAGACCTCAGACCATGTGCTCTAAGCCTTTTGTATTTCACTG
AGTCAGACCCCAGTCTGACATTTTCTACTTCTAAGCAAACAGCATGGAGA
ACAGTAATTTAGATGTTTTGGAGCAAAATGATTTCTCAGAATATTGTGGT
GAAGACTGGGAATGCTTGGATGAACAACGGGAATCCCTCACTAAGGCATT
TTCCTGGTTTCGATCTGAGGACAACAATGCCCGTGAGTCAGGGAACAGGG
TTGAAGTGGAGAAGTTGCCTCTTCATCCTGGCTCACAGTTGAGCTATGGT
GAGAGTATGGTGCTGGTTATGGCATTCATATTATCCCACCACCTCACCTC
AAGTGCTGTGGTAGACCTCCTTACCCTGATTGGACTACACACCCAGTACG
ACAGCCTGTTCTGCACGTCCAAGCACCTTTTTGACAAGTTTTTCAGTTTA
AGGAACGTGACTTTTCCCGTTAAAAGACACTACTTCTGTTCAGCTTGCCT
GACAGCGGTTTCCTCTGATGATGCTGTATGCAGCAAGTGCGAAGTCAACT
TAAGCTCGGAACGGTCAACATTCTACTTCTTGGAAATGAGCATTGTGTCA
CAACTCCAAGCAATGTTTCAAAGTAAGTCTTATGATATATGTACACAATT
AAATTTTTTTTGCTTTATTCAGTTTCCTTGATAATTAATTGATTCAAGTT
GTATACATACTTTTTATTTCTTCCAAATTATATGTGTAGAAATGCCACAT
CTAACCTATAACTAGAAGTCTGTAACTTGTAAATATGGTAGTGCAAATTT
GTGTATTTTTGGTTATACCCCATATCTAATTCTATATGCAATCATTGTCG
TCATTTGTCCAATTTTCATGTTTTCGTAGGGAAAGACTTCCACCAAGCTA
TCATCAGACAGAGGCAACGAAAGAAAAAACACCCCTCAGCCATAGAAGAT
ATAACAGATGGCTCTATCTACAACAGCATCGCAGAACTTCAGGACCAGCG
CAACATTTCATTCATCATGAACACAGACGGAATCAAAGTGTTCCGGTCTT
CAAACTACGGACTTTGGCCAGTTTATTTGGCGATTAACGAGTTACCATTT
AGAATGCGGTAAGTGCATTTTGTTTGACCTTTTTGGTAATTAACATGAGC
TGCAATGCATTTGGACAGTTTCCAACCCTTAACATTTGTGCCATATGTAT
AACATATACATGTCTATCATCAAGGCTTGCACCTAACCCTGCAGATTTCA
GCATGAAATAAATTAAGAACAATGTACAGAATAAGTAGCATGAAAAGCTA
GCAGCACTTTGATGAGCGATGAAAAATTAAAACCATAAATACAGCTTACT
ACAGTAGTCAAATGGCTTTGGGTAGCCAAAGTGCAAAGAACTAAGTATAC
AATGTAGGGTTAATTGTTGTGTACTATGTAAAGGTAAAGGTAAAGGCAGT
CCAATAGTATTTTTGAGGCCAGAGGGATAGTGGGTTGTTATCTGCTACAT
GTATGTCTAGGGCACAGTATTGGAAGGCGCAGCCCATCCCTCTCCTTCCA
ACCACTTTTATCTCGAGCCTATGACAAAACAAATTCTCTTTACACTGGGT
TCCTGCTGTCGCCAGTCCTGCTGTCTTGTTTCTGTTTAGGCGCAGTTTAC
ATTACGTTTTTCCCGTCAGCGGCGAAATTTCCCGCTGTCGGGAGGCCGCT
GTCGCGACGTCTCTAGACACACCGCCCGGAAATCTGACAGACACCTGCGG
TGCTTGCATTTCGCCATCTTGTAGAAAGTATCGGGCGTAAGCATAACAAA
AGCAAGAAACAAAATTGTATGATTGTACAACGGTAGACGGCGTCTCCCCG
CCCGTATTAAACTACAATGCAAAGCCTTGTCTATGTGTAGATATTCCATG
CTCATCCCGCGAATCTCTCTCTANTCTCTCTCTATATATATACCGGGGAT
CTAAGTAGACTTACAGTATGCTAATCAACGCGTGCTTTATGCTAATCGCC
GAAACCCTGACTCCCGCTGACGCGAGCCCGACGTATTCTCTTTAGACGGA
GTTTGAAGTTGACGGGGACTCCCGCTGTGCTGACGGGCGACGGCTTCGAA
GCTGACGGGAGAAAATTTGTTGACAGCGGGACTTCGTCGACGGGAATTGT
CTTTACACGGGGTTCCCGATGTCGCCAGTGGCGCTGACGCCAGTGGCGCT
GACGGCAAAAGTATAATGTAAAGAGAGCCTTAGCCCTTTCATTAAACTAG
GTCATGTTCTGCACCATGTGTTTCTGATCATCATCCCAGCCATCAAAACC
ACTAGGTCCACACCTCATAAGATGTTGAGTTCACCTAGATCCAATCAGCT
ATTTCCACAGTGGGATAGTCCATATCTTCAGCTTTAAATTCATACCAAAG
TTCCTTGATCTACATAGATGTACTGGGCAAGTCCTGTAGATATGAAGAAG
TATAAAAATTATGTAGGTCTGAGGTATTTTTCTTGCACCACGGGTAGTTG
TTTACACCCATGCAACAGGGTCAAACCCAGGTTCGGCCGTGACCCGGCGA
ACGCCGTCTCAGAGAAGGCTGCGCAGAACCGATGCTCATAGAGATCTGCG
GTTCAACTGAAAGACAGCCACCATCTGAATAACATGTAGGAACGAGTGTA
AATAATAACCTAATTTCTGGGACAACCACACAACAATGAAACAAGAACCG
AACCTTTAAAACTTTTCATTTGGTGAACAACACTATGGTTCACACATGAT
AAAATGTCCGAAGTGAAAAGAAGTTCACTTTGGTGTTTTTATCAGCTCAA
AGGGAGTTTATTGTAAGGAATGACCTACTTTCAGGGACAGCAACACAGCA
ATGAAACAAGAAACCATCCATTTGAAACACTTAGGTCAAGATTTGATTAA
GAATAATTGAGTCAGAAACAAATCTTACTTTGCCTTTGGTATCTTAATTA
GTTCAAATTAAAGAAGCCAAAAATTAAAGAGGACAAGTGTAAAAATGACC
TACTTTCAGGGACAAGTCCACAGCAAGAGAAAAGAGCATTTAAACCTTTG
CAAGCATGCAATTTATAAACAACACTAAGGTCAACATTTGACAGAAAAAA
ACGTACATAGATATTCGCATGAGAGCTCATCGGTGTACATATTGGAAAAT
TTCAAACTTTGATCCAGCACCAAGAGTTGGACTCACCATAAATTTTCGTT
TGGACCTCCAACCTTCGTCAAATGTTCGATCCACTGCGTTGAACGCCGGG
AAGTCGGAGATGTAATGACGTCAGCAGCGAATCGAAAACAGCGGGCAGAC
GGAATCTTCCACCGTCGCGGTTCAGGGAGGGGTGATGAGCCCTGATGTAA
ATCGATTCCTTCACGCCCCTCACAAACCAGTCCTATTCCTTATCCAAAAT
GTGCACCTTATCAAGTGTCACTGTATGTCCCGGGGACTCAATATGTAACG
TTGGTTAACATAAAATTGCCATTTTCCCGATAATAGTTGATTGAAATCAA
TCTGGCAGAACAATAAACCATCCTTTTTTCTGTTATTCTGTTAGTATCAT
GTATTAACATTGCACTAATGCTATATATCTTAGATTTTCTCTCTAGTCGT
GCTGACACAATAATATTTCAACCTGAAACTACCGTCCGCCGCACGCAGAA
TGACATTGCTCTTGGACAGGTGCAAACATTATTCCAGGAGAGAAGATTCG
TCATTAATATCTTGCCACTAATTAGCTTTTACACAGCAGCTGTTGTGCCC
ATCTCGACTTGAAGAGAGTGCCAAGGTCATATAAACGTGACCAAAGAAAA
ATACAATGTTTTGATGATTGATCACACTTAGAATGCAGTTGCGATCACAC
TTAGAATGCAGTTGCAGGTTAGCAAAAGAGATTGCAATAAGTTGGCTTGT
AAATGATTGTGTTTAGCAGGAAGCGGATGTAACATTTGTCTTATAAACCA
GTGAACAACCATGCAGTGTGATTCTCCTACTAAGCCCCCAGACTCTGTCA
ATAAGGGACGGAGAGTTTTTGAGCTTTTCATCCATTGTTCTAAATACGTT
ACTCTATTCGTTTTGCATTGCTGGCGTTAAAACTGATTTTGCATCTAGCA
CATATCCCTAAAATAAACCGTTTCTAAAAATGGCGAATTTAATTACCCCG
CGAATTTATGTTAAACAACGTTATGCACTGGGGTGTCTGTGCTCCGAAGT
TTTGAGTGAACGTGCCGTTTCCCCTATGTACATCTCTGTACACGGTCCTC
TGATGTTCTGTCCTGCACAACGTATGTGGTAGATCACCCCACAATGTGCG
TACTGAAAATCCTCTGCAGAGCTTCCAAGAGATTCGTGACGTAAGGCAAG
ACAACCAAAGCCTTATTCTGTCTCATGGAAGGCATTTGAATACTACTAAG
TGTGGTCGTGGGTTTGGGTGCAGTTGCCTTTGCTCGTAACCGCCCGCTTC
GGGTAACCACAGTTTAACAAGGCCTGAGTGATGTGTTCTTTCTCCGTATC
TCTGTCCTGGGGGTTGGTAATAATACTGTCCACCCTGTGGAAGAGAGTCC
GGATGACCCCTAGTTTTTGTTCGAGAGGATGGTTGGATTTAAAGTTTAAA
AGTATTGATCCGTGTGAGTGGGTTTTCTCACGGTAGATCCTTATGTCCAA
CGAACCATCATCTTTCACAACTGTGAGAGTATCCAGGAAAGGCAGGGTTC
TGTCCTGTTCTTCCTCTGTGATAAATTTGATGTCTGGGTCCAAACTGTTG
AGATGTTCATGGAATTCGTCAGCGTGGGCCTTCTTCAATTTAGTGTATCA
TCAACGTAGGGATACCACCATATATATGGTGGAGGGGGGGGGGGGGGGGG
GGCAGTACTGATAGCTACAAATGTAGTTGTTCCATGAAAAGGTTGCAAAC
AATTGGAGAAACTGGAGAGCCCATTACTGCTCCATGAACCTGGCGGTAAA
TTCCATTGTAAACAAAATATGTACAGTCTAAACAAACTTTCATCAAGTTG
ACCACATGTGCTGGTCAAAGTGTAGACCGCTGTCCGAGGGTTGTATCTGC
TTCTAGTCTCTGACAAATAATGTCCAGTGCTTTCCCTATTGGCACTGAGA
TAAACAAAGCTGTGACGTCATAGGAACGTAGCAATTTGTTGGCTTCTACT
CTTGCGAATTAAATATGGTGTGGCAATGGTCCAACCAAAGGGGATAAAAT
ATCCGCTAATTGTCTCGCACTAGGATATGTAATCAAGTCAATACTGCCCA
CAATTGGTCTAAGGGGTGTTCCGTTCTTGTGGATTTTAGGCAGTCCATAA
AATTTTGGTGGAAGCTCAATAGTGGGATATATAATTTGTAGTATTTTGAG
TGGTCTATCCCTTTTTCCTTTTTGATTTTTTGCAATACTTTAATCAACAG
TTCCTAATGTAATCAGACGTGGGGTCTTTCTTACCGAGTTTACTGTAGGT
CTTGTCGTCGCTCAGGAGTGCCTGGCATTTCTGGTGGTATTTTCAGTATG
TACGGCATTAAAACCTGCTTCAAAACAACTCGGACACTAAGGCAGTTGTT
AGTTTCACCCAAAGACAAGACACTGAAAGAACAAAAGTGTGGGGTGATCT
ACCACATACGTTGTGCAGGACAGAACATCAGAGGACCGTGTACAGAGACG
TACATATAGGGGAAACGGCACGTTCACTCAAAACTAGGTTTTTGGAGCAC
AGACGCCCCAGTACATATACATATTGAGTCCCGGGACATACAGTGACACT
TGATAAGGTGCACATTTTGGATAAGGAATAGGACTGGTTTGTGAGGGGCG
TGAAGGAAGCGATTTACATCAGGGCTCATCACCCCTCCCTGAACCGCGAC
GGTGGAAGATTCCGTCTGCCCGCTGTTTTCGATTCGCTGCTGACGTCATT
ACATCTCCGACTTCCCGGCGTTCAACGCAGTGGATCGAACATTTGACGAA
GGTTGGAGGTCCAAACGAAAATTTATGGTGAGTCCAACTCTTGGTGCTGG
ATCAAAGTTTGAAATTTTCCAATATGTACAATCGTAGATAACTGTTATCT
TACTTTGTCAGATTTTTTATTCCTTTTTTTCAATGACCTACTTCTGGAAG
CAGCCTTAGGGTATCAAAAAAGAGTCCAAACTTTGCAAGCATTCATTTTT
AGCTATTTAATGTAATCTATATTTGAAGCAGAAATATAGTACTGTTTGAG
ACTTATAGAATCTCAAAGTTAGGCAAGAAGCAACGTTTTTTCAGCCTAAA
AAAATCATATTGTTTTGAGGATGGCCAAGTGCACATATTTATCTGTACGT
CATTTTTCTTTAAATTAATAAGTTTAAGCAACGGTCCCAAAATTGGCCTT
TCTAGTTTTCCGCCACGTTAAAGTATCTTAACTTTGCAAAAACATGTCGA
AATGGCCCCAAAGCTTGATTGGACTGTTGCCATGGCAACGATGTGTGTTG
AGCAGAAAGAAAGCTATTTTCAGAGGTTGTGGGCCAAGAAATATCCGTGC
AAAATATAAGCCAAATCGTTTTTTTACTGCGTGCACTTGTGTTTTTACAG
ACATTAGCTCTTAAAACCAATGTCAAAGAAAGTCAGTTTTTCAATCATTA
TATTCCCCTCCTAGGAGGGTATATACTGTTTTTGCTTGCCTGTTCTTCTT
CTTCTTCCTCTTTCTTCTTCTTCTACCAAAAACCAAGTAGATGTGAGGTG
GCAGCTCTACTAATGGTATTGCAGAAAGTTATACCTTATGTTACATGGTA
CGGATGTTATATTTGAGATGTAGGTACCTTTAGAAAAGGTGAATACACCT
GACAATGAATTATGCTAATGAGGACCTCATTTGCATGATGTATGCAAAAA
CTAGTATTTCTCTTACCTTAAAAGCTGCGGATGTCATATTTGAGATATAG
GTACCTTGAGGAAAGGTGAACACACCTGGCCATAAATTATGCTAATGAGG
AGCTGATTTTTTCTTCTTCTTCTTCTTCTGCCAAAAAGTAGATGTGGGTG
GTAGCTCTTTATAATGATATTGCAGAAAGTTGTACGTACCTTATGTTACA
TGGTACGGATGTTATATTTGGAAAGGTGATTACATCTTGCCATAAAGTAT
GCTAATAAGGACCTGATTTGCATAATTTATGCAAAAATTTGTATTTCCCT
TACCGTGAAAGCTACGGATGTCATATTTGACATGTAGGTACCTTTAGGAA
ATTATGCTAATGAGGACCTCATTTGCATAATTTTTCCCTTACATTTTGCA
GGACACGTCGTGAGAATATGGTGATCGCTGGTCTATGGTTTGGGGAATGG
AAGCCCGTTATGAGAATCTATCTCCCTCCTCTGGCAAAAAGCATCAAGGC
TCT Coding sequence (CDS) from alignment at Sc0000018:679276..686828+ >transcript:BL89543_cuf0 ID=transcript:BL89543_cuf0|Name=transcript:BL89543_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=588bp|location=Sequence derived from alignment at Sc0000018:679276..686828+ (Branchiostoma lanceolatum)
ATGGAGAACAGTAATTTAGATGTTTTGGAGCAAAATGATTTCTCAGAATA
TTGTGGTGAAGACTGGGAATGCTTGGATGAACAACGGGAATCCCTCACTA
AGGCATTTTCCTGGTTTCGATCTGAGGACAACAATGCCCGTGAGTCAGGG
AACAGGGTTGAAGTGGAGAAGTTGCCTCTTCATCCTGGCTCACAGTTGAG
CTATGGTGAGAGTATGGTGCTGGTTATGGCATTCATATTATCCCACCACC
TCACCTCAAGTGCTGTGGTAGACCTCCTTACCCTGATTGGACTACACACC
CAGTACGACAGCCTGTTCTGCACGTCCAAGCACCTTTTTGACAAGTTTTT
CAGTTTAAGGAACGTGACTTTTCCCGTTAAAAGACACTACTTCTGTTCAG
CTTGCCTGACAGCGGTTTCCTCTGATGATGCTGTATGCAGCAAGTGCGAA
GTCAACTTAAGCTCGGAACGGTCAACATTCTACTTCTTGGAAATGAGCAT
TGTGTCACAACTCCAAGCAATGTTTCAAAGTAAGTCTTATGATATATGTA
CACAATTAAATTTTTTTTGCTTTATTCAGTTTCCTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000018 | genome | Sc0000018:679276..686828 + |
Properties
| Property Name | Value |
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| Transcript id | BL89543_cuf0 |
| Biotype | protein_coding |
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