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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88944_cuf0 >transcript:BL88944_cuf0-protein ID=transcript:BL88944_cuf0-protein|Name=transcript:BL88944_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=336bp
LGSGLEHAVPPDLPPRHTAPEEKEREPADRTGGKEDVEGYKHEDVLLEMS
GVKVILGSGVMRKAPPELPPRNPAMEEKQKGRAHRKEEEEDEEVEEHAQG
DGRNKQEDRKCEDPDLEYGDENPPGSGLQQPASPDAPPRHLDMGDHVVVW
AEQKEDSCYEQHYKPEETTEDEEQHYKPEETTENEEQDERSFAAKARDRA
VEMWNQVKSSKVFWLVLGFVLLIVVSVVAAAILSIRLVPGGKESQIGVVS
WFNLENSSTSWWTPIYKAAVYPTPVSSLLGLQSTGSVTSAERGNTKISLT
TLAPLSTTELNVCKIKPCQHGRCVNQGGGYRCTCSP Run BLAST on NCBI mRNA from alignment at Sc0000521:33983..37353+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88944_cuf0 ID=transcript:BL88944_cuf0|Name=transcript:BL88944_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3371bp|location=Sequence derived from alignment at Sc0000521:33983..37353+ (Branchiostoma lanceolatum)
GCTGGGTTCCGGTTTGGAACATGCAGTGCCCCCTGACCTCCCTCCTCGCC
ATACTGCCCCCGAGGAGAAAGAAAGGGAACCAGCAGACCGAACAGGCGGA
AAGGAAGATGTGGAGGGCTACAAGCACGAGGACGTGCTCCTAGAGATGAG
CGGGGTAAAAGTCATCTTGGGCTCTGGGGTGATGCGTAAAGCGCCACCTG
AGCTCCCTCCTCGCAATCCTGCCATGGAGGAGAAACAGAAAGGACGAGCA
CACCGAAAGGAAGAAGAAGAGGATGAAGAAGTAGAAGAACACGCACAAGG
TGATGGTAGGAACAAACAAGAGGACAGAAAGTGCGAAGATCCTGACCTAG
AGTATGGCGATGAAAATCCTCCGGGTTCAGGCTTGCAACAACCTGCGTCT
CCCGACGCCCCTCCTCGTCATCTTGACATGGGAGACCACGTGGTTGTGTG
GGCAGAGCAGAAGGAAGACTCGTGCTACGAGCAGCACTACAAACCAGAGG
AAACTACCGAAGATGAAGAGCAACACTACAAACCAGAGGAAACTACCGAA
AATGAAGAGCAAGATGAACGTAGCTTTGCTGCGAAAGCTAGAGGTACGTC
CAGATTCAGTCACGTTTGCACCACCATATGAGGTTATACAAACTATCTAT
TACATTCAAAGGCTATCTGAGGTTATAACAAGTTATTATATATCAAAGTC
TAAAGATGTATTGCCGTTGCAATTCAATTTGTACCATACTTTGGATTTCC
ACATGTGCAATTTATATAATCTGGTACAATTTAGATCTTGGCTTTTGGTT
AGTTCGCTGATAATATTCAGCTACGATCTCATGATCAAAGGAAGAATTTG
GCATCACGGTTTCTTCTTTTCCGTCTTTTTGAACTTATGCTCTTGGTAGA
AATTGTTGCTCATAGGCATCTGCTGGCTAAGAATTAGCGCAAACTCATTG
AAAACTATAGAGGGTTTAAATCTTATACAAAGCGTCCTATGCGATAGAGG
CTATGAAGACACCATACCGCAAACCCATGCAGTGGAGAAGGTGATACAAA
AAAAATCAAGCAAATTAGCACTTCATTTGCATAATTCACAAGGAAATGCC
ACAACAACCTTCCTTACTTTTTACGATAAGACTTTCAGCATGTGTTATTT
AGGAAAAGAAGACTGATATGATGATGTATGCAATTTTGCATAATCAATTC
AAAAAACTTTAGAATACGTCTTTGTAAAGGTTAACAGCATTTGGCGAAGG
TACGAGGTCATGGAGCTCAAGTCTTCCAATACTACCAACACAACGAAGAA
AGAAATACGTTATTTGGATCAGTTGCTGCCATTGGTTTTAACTTTTCACA
TCCTAATGATTTACAAAAATTATTACATTCCACTATAATCAGCCAACGCA
CTCGTTACTCATGATCAAACCTGGGTTTGGTGAACCAATTAGTGTTAGAG
ATTTAGTTACTACGCAGTAGTAAAACCTGGTTACCCATGTAGTAAATCAG
CCTATCAGATTTCAATGGTTTTCTCATACCTTGATTGCCTATTGTATTCA
TAAATTTCTTTTATACATGTAATCCACTTGCCTCCGATGATGATGATCTC
CTATCATAAATTCGCATTAAAGAAACTTTCATCACAGCCATGCTGTGATG
GCAACGTCTGTTGATACTTTCTTCAGTACTTTCAACGACATACTTTACAA
ACTGGTGATATCTTCTAGGTTTTGTACTATATTGCATCTCAGATCGTGCT
GTGGAGATGTGGAACCAGGTAAAATCCAGTAAAGTTTTCTGGCTTGTGCT
GGGTTTCGTCCTTCTGATAGTAGTGTCGGTTGTCGCCGCTGCAATCCTAT
CAATTCGTCTTGTACCTGGAGGGAAGGTAAGCTGTGGTCTTTATTATACG
TTTTTGATTGATCAATTGAACGAAACACCAGAAAAAGCAATACAATTGAT
AGCGGCGCCGGCATTGGTTGACATTGAAGTAGATGGCAGCACAAGAATCC
AGGGGTTCTCTGTTCAAATTCCTGACAGGCCCCGATGTTATGTCATTGCT
TCACCTTGCAATTCAGCCACATACATTTGTATAAGGAATGTCCAGTGTCT
GAACAATATAGCCAACAAAAGCCCTGGAATTGGGTTGTCATTATGACATT
GAATCAGCAACAGGTACATTACAGCGCAAACCTAGTTAAGCCCCTCGCAA
TTTAGCCCCTGGCTTTAAAAAGAGAGACTAGTTGGCTAGCAATATGAATA
GTATATTATGAGTGACTTTAATCATTAATATCTTTGCTGTATTATCCGTT
TCATCTATTTTTTCAGTCCTTGACTGTCGACGTCTTCGTCACTTTATTTG
TTATTTAGGCCATGTTCGTTTGATTATATAGGTAACATCCGCGCGCGCAT
CAATTTTCGTTCGTTTCTAAAAAAATGTTTTTGGCCATACGGTAAATCGT
AGAAAGCAGGCGGAATATGAGAAAATATATGCCGTAAATTGCAAAGAAAC
AAAATATTAGAAAACGGATACTGATGCGATAGAATGCCGAAGTCAATTCC
AAAGTCAAAGAAGAAGATGTGAAATAACAAAATGTAGTCTTATTTTTCGG
TATACCATACTCCCTGCGTTTAGTCATTTCTTTAACCTTCCTGGTTATTC
AAATTTTATACTGAAGGCAACTTTTTTTCGAAACTTTTTTTATTCGCACG
CTCGTTTCAGTTTTGGGGTTTCTATAGGACGTCATCCATATCCATATAAT
CAAATCAAATATGCAGCAGCAGACTTCATCACTGATACCCTAATGTAGGA
AGCTCTTAAAGAAGATATGAACGTTTTAGCTGTGAAAGGGAAAAATGTAA
TTCTATTCTCCATGTATAGTTCTGAAATGCACCTTCTCGCAGGAGAGTCA
AATTGGTGTGGTGAGCTGGTTTAACCTAGAGAATTCAAGCACTTCGTGGT
GGACGCCCATCTACAAGGCTGCCGTCTACCCAACCCCCGTATCCTCACTG
TTGGGGTTGCAGTCTACAGGATCAGTTACAAGCGCCGAACGTGGAAACAC
GAAGATCTCACTAACAACACTCGCGCCTCTGTCAACTACTGGTGAGTGCC
TGGACAATACAAGTTGAAGCTACCAAAATCCCACAAAGACCATGTCTTAT
TTATAACGCAAAAATGTTTTTAAATGACCTTTCAGATGCAAAGGGTTTGT
TTCTATTCTTTATCATCAAAACATGATTGATGAATTATCAAGTTGCTGTG
TCTCAAGTAACTGCAATGTTTCTTTTCCATCATACAGAACTAAACGTGTG
CAAGATCAAACCATGTCAACATGGACGCTGTGTGAACCAAGGCGGTGGGT
ACAGGTGCACCTGTTCGCCTG Coding sequence (CDS) from alignment at Sc0000521:33983..37353+ >transcript:BL88944_cuf0 ID=transcript:BL88944_cuf0|Name=transcript:BL88944_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4032bp|location=Sequence derived from alignment at Sc0000521:33983..37353+ (Branchiostoma lanceolatum)
CTGGGTTCCGGTTTGGAACATGCAGTGCCCCCTGACCTCCCTCCTCGCCA
TACTGCCCCCGAGGAGAAAGAAAGGGAACCAGCAGACCGAACAGGCGGAA
AGGAAGATGTGGAGGGCTACAAGCACGAGGACGTGCTCCTAGAGATGAGC
GGGGTAAAAGTCATCTTGGGCTCTGGGGTGATGCGTAAAGCGCCACCTGA
GCTCCCTCCTCGCAATCCTGCCATGGAGGAGAAACAGAAAGGACGAGCAC
ACCGAAAGGAAGAAGAAGAGGATGAAGAAGTAGAAGAACACGCACAAGGT
GATGGTAGGAACAAACAAGAGGACAGAAAGTGCGAAGATCCTGACCTAGA
GTATGGCGATGAAAATCCTCCGGGTTCAGGCTTGCAACAACCTGCGTCTC
CCGACGCCCCTCCTCGTCATCTTGACATGGGAGACCACGTGGTTGTGTGG
GCAGAGCAGAAGGAAGACTCGTGCTACGAGCAGCACTACAAACCAGAGGA
AACTACCGAAGATGAAGAGCAACACTACAAACCAGAGGAAACTACCGAAA
ATGAAGAGCAAGATGAACGTAGCTTTGCTGCGAAAGCTAGAGATCGTGCT
GTGGAGATGTGGAACCAGGTAAAATCCAGTAAAGTTTTCTGGCTTGTGCT
GGGTTTCGTCCTTCTGATAGTAGTGTCGGTTGTCGCCGCTGCAATCCTAT
CAATTCGTCTTGTACCTGGAGGGAAGGAGAGTCAAATTGGTGTGGTGAGC
TGGTTTAACCTAGAGAATTCAAGCACTTCGTGGTGGACGCCCATCTACAA
GGCTGCCGTCTACCCAACCCCCGTATCCTCACTGTTGGGGTTGCAGTCTA
CAGGATCAGTTACAAGCGCCGAACGTGGAAACACGAAGATCTCACTAACA
ACACTCGCGCCTCTGTCAACTACTGAACTAAACGTGTGCAAGATCAAACC
ATGTCAACATGGACGCTGTGTGAACCAAGGCGGTGGGTACAGGTGCACCT
GTTCGCCTCTGGGTTCCGGTTTGGAACATGCAGTGCCCCCTGACCTCCCT
CCTCGCCATACTGCCCCCGAGGAGAAAGAAAGGGAACCAGCAGACCGAAC
AGGCGGAAAGGAAGATGTGGAGGGCTACAAGCACGAGGACGTGCTCCTAG
AGATGAGCGGGGTAAAAGTCATCTTGGGCTCTGGGGTGATGCGTAAAGCG
CCACCTGAGCTCCCTCCTCGCAATCCTGCCATGGAGGAGAAACAGAAAGG
ACGAGCACACCGAAAGGAAGAAGAAGAGGATGAAGAAGTAGAAGAACACG
CACAAGGTGATGGTAGGAACAAACAAGAGGACAGAAAGTGCGAAGATCCT
GACCTAGAGTATGGCGATGAAAATCCTCCGGGTTCAGGCTTGCAACAACC
TGCGTCTCCCGACGCCCCTCCTCGTCATCTTGACATGGGAGACCACGTGG
TTGTGTGGGCAGAGCAGAAGGAAGACTCGTGCTACGAGCAGCACTACAAA
CCAGAGGAAACTACCGAAGATGAAGAGCAACACTACAAACCAGAGGAAAC
TACCGAAAATGAAGAGCAAGATGAACGTAGCTTTGCTGCGAAAGCTAGAG
ATCGTGCTGTGGAGATGTGGAACCAGGTAAAATCCAGTAAAGTTTTCTGG
CTTGTGCTGGGTTTCGTCCTTCTGATAGTAGTGTCGGTTGTCGCCGCTGC
AATCCTATCAATTCGTCTTGTACCTGGAGGGAAGGAGAGTCAAATTGGTG
TGGTGAGCTGGTTTAACCTAGAGAATTCAAGCACTTCGTGGTGGACGCCC
ATCTACAAGGCTGCCGTCTACCCAACCCCCGTATCCTCACTGTTGGGGTT
GCAGTCTACAGGATCAGTTACAAGCGCCGAACGTGGAAACACGAAGATCT
CACTAACAACACTCGCGCCTCTGTCAACTACTGAACTAAACGTGTGCAAG
ATCAAACCATGTCAACATGGACGCTGTGTGAACCAAGGCGGTGGGTACAG
GTGCACCTGTTCGCCTCTGGGTTCCGGTTTGGAACATGCAGTGCCCCCTG
ACCTCCCTCCTCGCCATACTGCCCCCGAGGAGAAAGAAAGGGAACCAGCA
GACCGAACAGGCGGAAAGGAAGATGTGGAGGGCTACAAGCACGAGGACGT
GCTCCTAGAGATGAGCGGGGTAAAAGTCATCTTGGGCTCTGGGGTGATGC
GTAAAGCGCCACCTGAGCTCCCTCCTCGCAATCCTGCCATGGAGGAGAAA
CAGAAAGGACGAGCACACCGAAAGGAAGAAGAAGAGGATGAAGAAGTAGA
AGAACACGCACAAGGTGATGGTAGGAACAAACAAGAGGACAGAAAGTGCG
AAGATCCTGACCTAGAGTATGGCGATGAAAATCCTCCGGGTTCAGGCTTG
CAACAACCTGCGTCTCCCGACGCCCCTCCTCGTCATCTTGACATGGGAGA
CCACGTGGTTGTGTGGGCAGAGCAGAAGGAAGACTCGTGCTACGAGCAGC
ACTACAAACCAGAGGAAACTACCGAAGATGAAGAGCAACACTACAAACCA
GAGGAAACTACCGAAAATGAAGAGCAAGATGAACGTAGCTTTGCTGCGAA
AGCTAGAGATCGTGCTGTGGAGATGTGGAACCAGGTAAAATCCAGTAAAG
TTTTCTGGCTTGTGCTGGGTTTCGTCCTTCTGATAGTAGTGTCGGTTGTC
GCCGCTGCAATCCTATCAATTCGTCTTGTACCTGGAGGGAAGGAGAGTCA
AATTGGTGTGGTGAGCTGGTTTAACCTAGAGAATTCAAGCACTTCGTGGT
GGACGCCCATCTACAAGGCTGCCGTCTACCCAACCCCCGTATCCTCACTG
TTGGGGTTGCAGTCTACAGGATCAGTTACAAGCGCCGAACGTGGAAACAC
GAAGATCTCACTAACAACACTCGCGCCTCTGTCAACTACTGAACTAAACG
TGTGCAAGATCAAACCATGTCAACATGGACGCTGTGTGAACCAAGGCGGT
GGGTACAGGTGCACCTGTTCGCCTCTGGGTTCCGGTTTGGAACATGCAGT
GCCCCCTGACCTCCCTCCTCGCCATACTGCCCCCGAGGAGAAAGAAAGGG
AACCAGCAGACCGAACAGGCGGAAAGGAAGATGTGGAGGGCTACAAGCAC
GAGGACGTGCTCCTAGAGATGAGCGGGGTAAAAGTCATCTTGGGCTCTGG
GGTGATGCGTAAAGCGCCACCTGAGCTCCCTCCTCGCAATCCTGCCATGG
AGGAGAAACAGAAAGGACGAGCACACCGAAAGGAAGAAGAAGAGGATGAA
GAAGTAGAAGAACACGCACAAGGTGATGGTAGGAACAAACAAGAGGACAG
AAAGTGCGAAGATCCTGACCTAGAGTATGGCGATGAAAATCCTCCGGGTT
CAGGCTTGCAACAACCTGCGTCTCCCGACGCCCCTCCTCGTCATCTTGAC
ATGGGAGACCACGTGGTTGTGTGGGCAGAGCAGAAGGAAGACTCGTGCTA
CGAGCAGCACTACAAACCAGAGGAAACTACCGAAGATGAAGAGCAACACT
ACAAACCAGAGGAAACTACCGAAAATGAAGAGCAAGATGAACGTAGCTTT
GCTGCGAAAGCTAGAGATCGTGCTGTGGAGATGTGGAACCAGGTAAAATC
CAGTAAAGTTTTCTGGCTTGTGCTGGGTTTCGTCCTTCTGATAGTAGTGT
CGGTTGTCGCCGCTGCAATCCTATCAATTCGTCTTGTACCTGGAGGGAAG
GAGAGTCAAATTGGTGTGGTGAGCTGGTTTAACCTAGAGAATTCAAGCAC
TTCGTGGTGGACGCCCATCTACAAGGCTGCCGTCTACCCAACCCCCGTAT
CCTCACTGTTGGGGTTGCAGTCTACAGGATCAGTTACAAGCGCCGAACGT
GGAAACACGAAGATCTCACTAACAACACTCGCGCCTCTGTCAACTACTGA
ACTAAACGTGTGCAAGATCAAACCATGTCAACATGGACGCTGTGTGAACC
AAGGCGGTGGGTACAGGTGCACCTGTTCGCCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000521 | genome | Sc0000521:33983..37353 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88944_cuf0 |
| Biotype | protein_coding |
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