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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88943_cuf0 >transcript:BL88943_cuf0-protein ID=transcript:BL88943_cuf0-protein|Name=transcript:BL88943_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=112bp
MLASINDVGENNFIAGLISNDLHAAVWVGLKKESGQYKWTDGSRTDYTNW
APGEPGDSTHYPLPRRENCTGMYTKRGANNPWAPPTRRPGQWGGLRCFSR
YGVYPFICEKPI Run BLAST on NCBI mRNA from alignment at Sc0000521:41667..46346+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88943_cuf0 ID=transcript:BL88943_cuf0|Name=transcript:BL88943_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4680bp|location=Sequence derived from alignment at Sc0000521:41667..46346+ (Branchiostoma lanceolatum)
TTGCAGAAAGTCTATGGCGCCCCCCGTCTCTGTTGAGGGATGGTTGTAAA
GCCCGGATGGTTTTAGTTTGTGTAAGAAACACACCTTTAACCACTGAAAG
ATAAGTCCTCATGATCATTATTTCCCACAGCCCTACGATGTCAGAATGGG
TGGAGCAAATACAACAACCACTGCTACAAGCTGGTGGACAATGAAGCCAG
TTGCCTGAATTGGTCTTCAGCGAACTCACTATGCAAAGAACACGACGCAA
TGCTTGCCTCTATCAACGACGTTGGCGAGAACAACTTCATTGCAGGTCTC
ATCTCAAATGGTGGGTGATACGCAGAGTTTCTTTTCCTACATGAATGACG
AAGACTTCAAATCTTTGATGTCTGGATTCGAATATGAATCCTTTATCGAT
TCTTTTTTTTTCAATTTCTCTTATCACTAAATGTATTTGTTAATATATAT
AATTATAGAATGGAATTTTTTCTGATCACATACAGTCAAACATGTTTATA
GTGACCATCCAATGGACTGGACGAATATGGTCAAAGTAATGATGTGGTCA
CTGTATAGACAGGATTCCTAAAGTTTGGGTTAAGGAGAAAATATCTTAAA
GGCGGGACCAAAGAGTTGTTCACATGGTAAGAATGAGAAACATCTTCTGG
AGAAATACTCAGCCTTAGACATTCATTGTCCTGGATGACGGTGGCCCTGA
ATGATTCGTTTTAATATATAAAGTAAGAGATATCCGCTCACAAGACTCTA
CCCTCTTCAAGAATATCTGTATTATGCAATACCAATCCGTCCCAGTATCA
CAAAATTTCTGGGAGAAACGATTTTTGCTCTATTTCTTGGAATGTATTAT
TGAAATCTCCCTTCTTGGCCATACTAAAGAACCCAAACTAATTAGTATGC
AATGTACGATATTGCATGATATATATCCAACCAGAATATTGTTGCATGAG
ATGGGAATAGCAGAAAATAATAAATGTATTTTTTTTAGATATTACATGAT
ATATAGAGCACGTTCTCTTTGACTGTAAAATTGTTAAACCATTATGGGAT
TATGTGGAATTTTTTTTAGTTATTCTATATCTCTTACTGTATACATGACA
TAATATTTGGATACAACCTACACGTGTTAAAAAAGTTTTGATACATCAAT
GAACTAATGCTAGTTGCTAAGTTATCCATTGTGAAATATTAGTTTGCAAC
GTCAGCTCCGAATTCATCATGCCTAGATCCAGACATCATCTTGAAAGTTT
TCAAATCCGAATGTTCTCTTAGAAACTTGATATAAGCCACACATTGTATA
ACGTTCTTTGACATTCATTCAGGTACAGTGACGAACACGTAATCAGGAAA
ATAGTGCATACTGTCCTCAATCAGACCTGGCTCTATAGCTACCCTTGAAT
TTCCTACATTCATTATGGCGTGAAAAATTAGTCATGCAAAATACTGGAGC
AATACTGGAAAAGATCACCAAAGTCAAAGAAAAAAACGCCCCTCCCTATA
ACTTAATAGTCGACTGAGGTGTTCGGTAGCAAGTATCTAAACAACATATC
AGGCTGTTTTCTTTTATTGCAGATCTTCATGCAGCCGTCTGGGTGGGACT
GAAGAAAGAATCTGGACAATATAAGTGGACGGATGGGTCACGTACTGACT
ACACCAATTGGGCTCCGGGTGAGCCTGGTGACAGCACGCATTACCCACTT
CCTCGGAGAGAGAACTGTACCGGCATGTATACCAAGGTCTGTGCGTTCCC
TCCTTTCGAGTAAAGCCCAGATTAGCCGAACATGGCCTCCCGACCTTCCC
CCGAACACGGTTAGGAGTGGTTAGGTCGGCTTGGGTCGGCTGTTGTTCGG
CGAGGTCGGCTGGTGGTCGGCCGCGCCAGTCGACTGTTTTTAAATTTTCA
AATCATTCGGCTGTGGACGGGAGGTTTGGAATGGGTTGGCTGGTGGTCTG
CTGGTGTTCGGCGCAGTTGACTGGGTGTTGGCTGGTGATCGGGAGTACTG
GTTGGAAGACGATTGGGACATGGTTAAGATATGGTCGGCGCTAACAGATA
AACGTGGCCTAAAACTGGTCAGACTTCTCTCGAACCGGCTACCGCCCAGA
CCTTAGTCGGCTCGTGGTTGGGAGCCATGTTCGGCTATGTGTAACCGGGC
CCCGGGGCTAAAGGTAGCTTAAAGCTCAGTGGAACATGTGTTTCCATTCT
TTGTTAAAGGAGTCCTAAAGTCCAGAGGGGGAAGTTATTTTCCAAAAGAT
GGTAATTTTAGGAAGTAGAAATGAATATTTTTACCAGTATACGATAAAGT
ACCCACTAGTCCCGTGCGCATCCAAAACGTTCAGTATTCTACCAAATTCC
CCAGGTGACCCTCAGCCTATGTGTTTTTTACAATGTGCCTGACAATGCCT
GACAAAAATTAGATTACAAAAAGAATGTCAGGGTGGTTAAGAAAAACCTT
CTGGCTATGTGTTCTTTTATATCTTATTAACAATTGGCCTTCATATCGTG
CTTAACCACCCTCATTTACACCGAAAATATCCATGTTTAAAAATGCATGT
TTACGCATAGGGAATACACTGGTAGGGTCTGCAGGGGTTTAGTGAGTATT
ATATTGTTTTAAAAAAACACACCTTGTAAAATTTACCACAAGCAGAATTT
TGTAAAAAGTCGGTTGATTATGTATTGATTGATACATAATCTAGTGGAAA
ATAACACCGCCTTCTGGAGTTTAGGACTCCTTTAATGTCTACTTTGAAAA
AAGCACTATCTTGAGCTGTCTATCTGAACTATTGAGGAGAACACAAGAAG
GAAGAAATCCTCATTGTAAAATCAAGACGAGGATGTCTTAGAGTCTTTAA
CGATTATGTCTAAATCTTTTTTTTTAAATCAAAAGCTTGGCCATCTTATA
TAATACCAACAACATACCAAAATGAGCGAATCTTCAGATTAGCATATTTC
TCATCTAAGATTTGAAACGACTAGTAGCATCAAACACATTGCTAGCTGGT
AACGTTATAAAAGGAAGGATGAAAGCACTTAAAATGACATCGATACAATC
ACTATATATTATGTTTTACCATAATTGTTACTAAGACTTGTTATAGATCC
TCCCGTACCTATTGGCACACCGGGCGGCAATTCTTCTCCACTTAGGGCGG
ATACTATAGTTATATATGCTCTGCAAAAAGAGACAATCTTTCTTCTTCTT
CTTTTGTTATTTGATTGTGGAATTGTGAAATATAACATCTGAATGTAGAT
TTTATGTGGTATCACTTTTTCAACAGCGCGGCGCAAATAATCCTTGGGCA
CCACCAACTAGGCGCCCGGGCCAGTGGGGCGGCCTTCGATGCTTCTCTCG
CTACGGTGTTTATCCCTTCATCTGCGAGAAACCGATTTGAGAATCTACAA
CATTGTATAATTGTAGAGAAATAAGACTGTTCCAAAACAGTACTTACGTC
GCGTGACCGTAAAGTCATGTGACTTAGACAATTGGTCCCTTGATCGTGAA
TTTTGAATATCACTGTATAGTAGAACTATTAAAAAAACGTCAATGCTCTT
ACTTTTAAAATGTTAGATATTAGAATTATTGCGTTGCCATGTTTGTACTA
ACCAACACTGATCAGATCTCATGCTTAGGCCACAGCAAGTGAATTCTATG
GATGACATCAGCGCGCGCATTGATTTTTGCCTGATTTTGAAATCAAAAAC
ATGATTTTTTTACCCTTCGGCAATGGTCATCATGCCGAATATGTTGCAAA
CTACTGTCGGTTTTATCGCAAAAAAACGTCAAAAGGCATGTGCACATGTA
AGAATGGTGAAAAATCGGTACAAATGCGTTGTACAATTATTGTGTATACA
TGCTGTTATAAGATTGCTCCTAGTCACGAGCTTATAGCATAGCAAGACAC
AGTGCAGCCCTCATATCAAACTTGTACTTGGATATAGTATTATCAAATTC
GATAACAGGGTCAGATGAAGTAACTAATGTCATGTGGTTTGAGTAGACCA
TTGTCCCACTGTCTGTATGTTGAAGACAGAATGACAAAACGGGTGATTTC
TAAGGCACGGCTATTCAGTCAGACAGTCAGGACAGCAAAATATAGCGGAG
AGCTATTCTGTAAGAGAACTTCAGGTGAGACAAAGTGAGCAGAGCCAGCA
ACATGTAGTCACGTACCGTCAGTCTGCCTCATGACTCGTAAGACTCCCGT
GCCCAGTGTACGGGAAACCTTGTATCTGCCGTCTTGATGTGCTATACAAA
CCCAGATCTAAATGTATAATTTAATGATTTTAATGTTGACATCAGTGTTA
TTTAATGTTTTGTTGAATACAGGGACAAACGATTTGTTGTAATAACGTGT
TTTATCGCTTCAATTCTTCTGACATGCTTTATGGTATTGAAGTTTGAAAA
TGTGGATGTCTTATTTTTTTTGCCCGCATTGTTCTTTTTTTTCCGCCCGC
GCGCACTGAATTTGGAGGCCGCAGAGGATGTTATCCATAAAATTTACTTG
CGGCGACCTAATGTTATATTACATAGATTATTGAATGAAAATCATTTCCT
TAATAGGAATGACAAGCGACTATTGTGAGTATACAACATACATAGAGACA
GGCAGTGAAAATCCAGAGAGGTATCCAGTCCATTGCAGAATTCTAAAATG
TACTTTTTATGAGTTTTACTTCTTCCTTAA Coding sequence (CDS) from alignment at Sc0000521:41667..46346+ >transcript:BL88943_cuf0 ID=transcript:BL88943_cuf0|Name=transcript:BL88943_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1017bp|location=Sequence derived from alignment at Sc0000521:41667..46346+ (Branchiostoma lanceolatum)
ATGCTTGCCTCTATCAACGACGTTGGCGAGAACAACTTCATTGCAGGTCT
CATCTCAAATGATCTTCATGCAGCCGTCTGGGTGGGACTGAAGAAAGAAT
CTGGACAATATAAGTGGACGGATGGGTCACGTACTGACTACACCAATTGG
GCTCCGGGTGAGCCTGGTGACAGCACGCATTACCCACTTCCTCGGAGAGA
GAACTGTACCGGCATGTATACCAAGCGCGGCGCAAATAATCCTTGGGCAC
CACCAACTAGGCGCCCGGGCCAGTGGGGCGGCCTTCGATGCTTCTCTCGC
TACGGTGTTTATCCCTTCATCTGCGAGAAACCGATTTGAATGCTTGCCTC
TATCAACGACGTTGGCGAGAACAACTTCATTGCAGGTCTCATCTCAAATG
ATCTTCATGCAGCCGTCTGGGTGGGACTGAAGAAAGAATCTGGACAATAT
AAGTGGACGGATGGGTCACGTACTGACTACACCAATTGGGCTCCGGGTGA
GCCTGGTGACAGCACGCATTACCCACTTCCTCGGAGAGAGAACTGTACCG
GCATGTATACCAAGCGCGGCGCAAATAATCCTTGGGCACCACCAACTAGG
CGCCCGGGCCAGTGGGGCGGCCTTCGATGCTTCTCTCGCTACGGTGTTTA
TCCCTTCATCTGCGAGAAACCGATTTGAATGCTTGCCTCTATCAACGACG
TTGGCGAGAACAACTTCATTGCAGGTCTCATCTCAAATGATCTTCATGCA
GCCGTCTGGGTGGGACTGAAGAAAGAATCTGGACAATATAAGTGGACGGA
TGGGTCACGTACTGACTACACCAATTGGGCTCCGGGTGAGCCTGGTGACA
GCACGCATTACCCACTTCCTCGGAGAGAGAACTGTACCGGCATGTATACC
AAGCGCGGCGCAAATAATCCTTGGGCACCACCAACTAGGCGCCCGGGCCA
GTGGGGCGGCCTTCGATGCTTCTCTCGCTACGGTGTTTATCCCTTCATCT
GCGAGAAACCGATTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000521 | genome | Sc0000521:41667..46346 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88943_cuf0 |
| Biotype | protein_coding |
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