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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88877_cuf0 >transcript:BL88877_cuf0-protein ID=transcript:BL88877_cuf0-protein|Name=transcript:BL88877_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=303bp
TATSPSAATSSEATTNTPTPGKPETNKPISTEKPDIIAVDVEVPVTIDVE
EISSINIDVIIIVAVDSSIDFNAPFDPKLNDSSTEEYKNFTEEFITQVKP
FYDKTEGFKGINVTGFEPGENPSNKRRALGDLTVVNYDVDYSYTELQKEG
GIEQVISSTEIIKAIDDGSLTLGGKPALAGSYVKHTSQADLDNEAINIVL
EQIKDNPEDLNLCKLVKCQLGYDLNCSSPVDARCVSTCAFDKNYCKNYGQ
CVHVPGQNVLCNCDADPTGFYMGNKCEFYASQTLVIGLGATAGGLLFIII
ITL Run BLAST on NCBI mRNA from alignment at Sc0000014:4205601..4208998+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88877_cuf0 ID=transcript:BL88877_cuf0|Name=transcript:BL88877_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3398bp|location=Sequence derived from alignment at Sc0000014:4205601..4208998+ (Branchiostoma lanceolatum)
CACGGCTACTTCGCCTAGCGCCGCCACTAGTTCAGAAGCTACTACCAACA
CTCCAACTCCTGGAAAGCCAGAGACAAATAAGCCTATTTCTACAGAAAAA
CCCGGTAAGACACAATTTTATATACTGTACATGTGTTTGTATCTACGTGT
GCAAAAATGACACCCATTCTCGCTATTCCTATCATACATAGTGCCATTTC
TCTATCATAAAATGAATTTAGTTATCAAGTATGATCGGAATCAATATCAT
GAATGGATTGCACAGAGAAAGTTTTTTTTCTAATTGAGCAAATTTTACAG
CTTTTCCTCTGCTTCTCCATATTTTCCTCCTCCATTCGTTTTTTCTTTAA
ACTTGTCCTGACTTTCAACTTAGCTCGTTTAGAATTCTGAACGTTTTAGA
TATGCGCGTGCTTAAGCACTCAAATATAATGTAAAGAGCAAATTTAACGT
TTCAATATTCACCCGCTCAACTATAAGAGGTCCATGTAGGATGCAATTAT
TTTACAGGGGGTCTTCCGTAGAAATTCTCACAGTCTCTGTGAAAAAAATC
TCGCAAGCCCTTGCGGTAAGAAGTTGCTAAACTATGCGGAAGGGACTTGG
CGTCTCGCAGAACTTGAAGATAAATGTTTTCACAGGGGTGATCCTGGAAC
GGTTATGGGCAAAACGAGGATGGGCAAAATATGTTGTATTTGCTCTCGCA
AATGTTGTCTTTCTAGTTTTTATGATATTGTTAACGATGTGTCGCCCCAT
TTTATTTAGATATCATCGCCGTGGACGTAGAAGTTCCAGTTACAATAGGT
AAGTGTAAACACAGTGTGGCATAATGAATATGCTTTAATATCATAAAAAG
TTCACATCTGCTGTGCTTTTATGGTTTAAAACATTTCTTTGGCATCCATG
TGTATCTGAGCTAACATTCCATAACAAAATCGATAGAATCATAGATATTC
TTCACATGATATGCATACATAACAAACGGTGATTTATCTCCAACAGACGT
GGAAGAAATTTCTTCGATCAATATTGACGTCATCATCATCGTCGCTGTAG
ACTCTTCCATCGACTTCAATGCTCCATTTGATCCAAAGCTGAATGACTCA
TCAACGGAGGAATACAAAAACTTCACTGAGGAATTCATCACTCAGGTTAG
GTACTTTCCTCTATATCATGTCAAAGTATTACAAACAGGGGACATCATTA
TTCTATCATTCCGGACTTACAATCAAATTCCCAAAAACTTTCAGAAATTT
GTTTTTTTTTTATTCAATAACTTTATCTGATACTGATGATGCAGAATACC
ACTAATCAAAGATAACATCTTAATTCTGATATAATATACAGTTTGACAAT
ATTCTGTCTGTAGTTACCAGTACTCTGCAGAATTCTGCATAACGCTCTGA
GAATTTTTCAGAACTGCCCATGTCCCTGAAGACATCTAGATATTGATAAC
CTTTTGTTACAGCGTACTTGTAGACGTTCGTTCGTTTGGTCGATATATTG
AATCTACATAAAGTTTTCCGTAATCAGACTGTCAGTCCGGAATTATAGTG
TTCCCCGTTTACATCAATTAAAACATGGAAAACTGATGTGTCTATTTCCT
ACTATTTCTATTTTCATTGAACTTAATGACTCTTCTTCTATCACACAATC
GTATTCCCTAACAGGTGAAGCCATTCTACGATAAAACAGAAGGTTTTAAA
GGCATCAATGTTACTGGTTTCGAGTAAGTCTATTTTTCTTTATTATCTAA
ACCTATTGTCAGCTGATCTGAGTCATAGCGGATATATTTGCCGATCTTAT
TCAATTCTATGTAACACATACAGAGAAAATACGCTAAGGTAATACAAATA
GAAATCAGGTCATACTTTAAGTAGTAACGCTGATGTGAATTCTTGGAAAT
GATGGAAGAAGTAGTGAGAGCTTTAAACTTTCATCATTATTAAAGTAGTA
ACCTTGATGCACACAACTAGACGCACTGAGACAAAAACAGATATGAATGT
AAAACAGGAAGTAAAAGATTATCGAAGACAAAGAAATACATTCAGTAACT
TCCCTTTCCTTGGATATTTGTTTTTCAGGCCAGGCGAAAACCCAAGCAAC
AAACGCAGGGCTCTTGGCGATTTGACTGTAGTCAACTATGACGTCGACTA
CAGCTACACTGAGCTGCAGAAAGAGGGTGGCATCGAACAAGTGATCAGTT
CAACTGAAATAATCAAGGCTATCGACGATGGATCATTGACTCTTGGTGGC
AAACCTGCACTTGCGGGATCTTACGTGAAACATACAAGTCAAGCAGGTAG
GGAAAGACATAGAATGTGAATTATTTCGCCAAACTTTTAGGAGACAACAC
TGAATTTGTCCTGATATCACATATTGCAGTTTATTATAAGATATCGTTTT
AAAATGATAGGACATGCCTACATGATATATAGGCGAAACGGATAAAACGG
GTATTACAATGTAAATGGGGTAGGTGTTCTCCGGAAACTTACCTCTTTTG
TGTGGAAACGACTAAAGATTTGTTCGTTGAAGCGACGCGGAATAATACTG
AAGTCATAACGACATTGACTTTTTCTTTTCAGATCTTGACAACGAAGCCA
TCAATATCGTGCTTGAACAGATAAAAGATAATCCCGAAGATCTAAATTTA
TGTAAATTAGTAAAATGTCAACTTGGATACGACCTCAACTGCTCATCACC
AGTCGACGCTAGATGTGTTTCAACATGCGCGTTCGACAAAAACTACTGCA
AAAACTATGGGCAATGTGTTCACGTACCAGGCCAAAACGTGTTATGCAAG
TGAGTATCCTATTCATCTTATCAATCATAGATAGATATTATATTATATTA
TATTTCATGTCCAAAAAGTTTATGGTAATTGATTACTACTTACGATTTCT
AACTATGAGGATAATATGTTCATGTGAGTACGTTTTCAGGTCATGACCAA
CATCACCGCATTAGAGCATCAGTGTACTCAAGCAATGGTCGAAAAGGGTG
AAATTGTTGCTGTGCATTAATCACAGTCGTTTCAGAAAGACGAACCAAAA
TGTAATTTAACCTAAATCTCGACCTGTCGGCTCAGGCTTGTATTTCCTAA
ATCTGAATACAAGCCCCATACAGTATACTGCCAACGCTTTGCTTGCTAGC
CTGGGCGCTATAGTTTTTAGCCTAACTCTCGGTCGCTACTGTAGCCAAAA
GCGACAGAGATAGCAGAGTAAAGCTAAAAAGGATTCCTTTATGGCCTTCA
CATTGAATTTTGTCATTGTTAGTTGTGATGCTGACCCTACTGGCTTCTAC
ATGGGAAACAAGTGCGAGTTCTACGCCTCTCAGACATTGGTGATTGGTTT
GGGGGCCACAGCTGGTGGTCTGCTGTTCATTATCATCATCACCCTGTC Coding sequence (CDS) from alignment at Sc0000014:4205601..4208998+ >transcript:BL88877_cuf0 ID=transcript:BL88877_cuf0|Name=transcript:BL88877_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=6363bp|location=Sequence derived from alignment at Sc0000014:4205601..4208998+ (Branchiostoma lanceolatum)
ACGGCTACTTCGCCTAGCGCCGCCACTAGTTCAGAAGCTACTACCAACAC
TCCAACTCCTGGAAAGCCAGAGACAAATAAGCCTATTTCTACAGAAAAAC
CCGATATCATCGCCGTGGACGTAGAAGTTCCAGTTACAATAGACGTGGAA
GAAATTTCTTCGATCAATATTGACGTCATCATCATCGTCGCTGTAGACTC
TTCCATCGACTTCAATGCTCCATTTGATCCAAAGCTGAATGACTCATCAA
CGGAGGAATACAAAAACTTCACTGAGGAATTCATCACTCAGGTGAAGCCA
TTCTACGATAAAACAGAAGGTTTTAAAGGCATCAATGTTACTGGTTTCGA
GCCAGGCGAAAACCCAAGCAACAAACGCAGGGCTCTTGGCGATTTGACTG
TAGTCAACTATGACGTCGACTACAGCTACACTGAGCTGCAGAAAGAGGGT
GGCATCGAACAAGTGATCAGTTCAACTGAAATAATCAAGGCTATCGACGA
TGGATCATTGACTCTTGGTGGCAAACCTGCACTTGCGGGATCTTACGTGA
AACATACAAGTCAAGCAGATCTTGACAACGAAGCCATCAATATCGTGCTT
GAACAGATAAAAGATAATCCCGAAGATCTAAATTTATGTAAATTAGTAAA
ATGTCAACTTGGATACGACCTCAACTGCTCATCACCAGTCGACGCTAGAT
GTGTTTCAACATGCGCGTTCGACAAAAACTACTGCAAAAACTATGGGCAA
TGTGTTCACGTACCAGGCCAAAACGTGTTATGCAATTGTGATGCTGACCC
TACTGGCTTCTACATGGGAAACAAGTGCGAGTTCTACGCCTCTCAGACAT
TGGTGATTGGTTTGGGGGCCACAGCTGGTGGTCTGCTGTTCATTATCATC
ATCACCCTGACGGCTACTTCGCCTAGCGCCGCCACTAGTTCAGAAGCTAC
TACCAACACTCCAACTCCTGGAAAGCCAGAGACAAATAAGCCTATTTCTA
CAGAAAAACCCGATATCATCGCCGTGGACGTAGAAGTTCCAGTTACAATA
GACGTGGAAGAAATTTCTTCGATCAATATTGACGTCATCATCATCGTCGC
TGTAGACTCTTCCATCGACTTCAATGCTCCATTTGATCCAAAGCTGAATG
ACTCATCAACGGAGGAATACAAAAACTTCACTGAGGAATTCATCACTCAG
GTGAAGCCATTCTACGATAAAACAGAAGGTTTTAAAGGCATCAATGTTAC
TGGTTTCGAGCCAGGCGAAAACCCAAGCAACAAACGCAGGGCTCTTGGCG
ATTTGACTGTAGTCAACTATGACGTCGACTACAGCTACACTGAGCTGCAG
AAAGAGGGTGGCATCGAACAAGTGATCAGTTCAACTGAAATAATCAAGGC
TATCGACGATGGATCATTGACTCTTGGTGGCAAACCTGCACTTGCGGGAT
CTTACGTGAAACATACAAGTCAAGCAGATCTTGACAACGAAGCCATCAAT
ATCGTGCTTGAACAGATAAAAGATAATCCCGAAGATCTAAATTTATGTAA
ATTAGTAAAATGTCAACTTGGATACGACCTCAACTGCTCATCACCAGTCG
ACGCTAGATGTGTTTCAACATGCGCGTTCGACAAAAACTACTGCAAAAAC
TATGGGCAATGTGTTCACGTACCAGGCCAAAACGTGTTATGCAATTGTGA
TGCTGACCCTACTGGCTTCTACATGGGAAACAAGTGCGAGTTCTACGCCT
CTCAGACATTGGTGATTGGTTTGGGGGCCACAGCTGGTGGTCTGCTGTTC
ATTATCATCATCACCCTGACGGCTACTTCGCCTAGCGCCGCCACTAGTTC
AGAAGCTACTACCAACACTCCAACTCCTGGAAAGCCAGAGACAAATAAGC
CTATTTCTACAGAAAAACCCGATATCATCGCCGTGGACGTAGAAGTTCCA
GTTACAATAGACGTGGAAGAAATTTCTTCGATCAATATTGACGTCATCAT
CATCGTCGCTGTAGACTCTTCCATCGACTTCAATGCTCCATTTGATCCAA
AGCTGAATGACTCATCAACGGAGGAATACAAAAACTTCACTGAGGAATTC
ATCACTCAGGTGAAGCCATTCTACGATAAAACAGAAGGTTTTAAAGGCAT
CAATGTTACTGGTTTCGAGCCAGGCGAAAACCCAAGCAACAAACGCAGGG
CTCTTGGCGATTTGACTGTAGTCAACTATGACGTCGACTACAGCTACACT
GAGCTGCAGAAAGAGGGTGGCATCGAACAAGTGATCAGTTCAACTGAAAT
AATCAAGGCTATCGACGATGGATCATTGACTCTTGGTGGCAAACCTGCAC
TTGCGGGATCTTACGTGAAACATACAAGTCAAGCAGATCTTGACAACGAA
GCCATCAATATCGTGCTTGAACAGATAAAAGATAATCCCGAAGATCTAAA
TTTATGTAAATTAGTAAAATGTCAACTTGGATACGACCTCAACTGCTCAT
CACCAGTCGACGCTAGATGTGTTTCAACATGCGCGTTCGACAAAAACTAC
TGCAAAAACTATGGGCAATGTGTTCACGTACCAGGCCAAAACGTGTTATG
CAATTGTGATGCTGACCCTACTGGCTTCTACATGGGAAACAAGTGCGAGT
TCTACGCCTCTCAGACATTGGTGATTGGTTTGGGGGCCACAGCTGGTGGT
CTGCTGTTCATTATCATCATCACCCTGACGGCTACTTCGCCTAGCGCCGC
CACTAGTTCAGAAGCTACTACCAACACTCCAACTCCTGGAAAGCCAGAGA
CAAATAAGCCTATTTCTACAGAAAAACCCGATATCATCGCCGTGGACGTA
GAAGTTCCAGTTACAATAGACGTGGAAGAAATTTCTTCGATCAATATTGA
CGTCATCATCATCGTCGCTGTAGACTCTTCCATCGACTTCAATGCTCCAT
TTGATCCAAAGCTGAATGACTCATCAACGGAGGAATACAAAAACTTCACT
GAGGAATTCATCACTCAGGTGAAGCCATTCTACGATAAAACAGAAGGTTT
TAAAGGCATCAATGTTACTGGTTTCGAGCCAGGCGAAAACCCAAGCAACA
AACGCAGGGCTCTTGGCGATTTGACTGTAGTCAACTATGACGTCGACTAC
AGCTACACTGAGCTGCAGAAAGAGGGTGGCATCGAACAAGTGATCAGTTC
AACTGAAATAATCAAGGCTATCGACGATGGATCATTGACTCTTGGTGGCA
AACCTGCACTTGCGGGATCTTACGTGAAACATACAAGTCAAGCAGATCTT
GACAACGAAGCCATCAATATCGTGCTTGAACAGATAAAAGATAATCCCGA
AGATCTAAATTTATGTAAATTAGTAAAATGTCAACTTGGATACGACCTCA
ACTGCTCATCACCAGTCGACGCTAGATGTGTTTCAACATGCGCGTTCGAC
AAAAACTACTGCAAAAACTATGGGCAATGTGTTCACGTACCAGGCCAAAA
CGTGTTATGCAATTGTGATGCTGACCCTACTGGCTTCTACATGGGAAACA
AGTGCGAGTTCTACGCCTCTCAGACATTGGTGATTGGTTTGGGGGCCACA
GCTGGTGGTCTGCTGTTCATTATCATCATCACCCTGACGGCTACTTCGCC
TAGCGCCGCCACTAGTTCAGAAGCTACTACCAACACTCCAACTCCTGGAA
AGCCAGAGACAAATAAGCCTATTTCTACAGAAAAACCCGATATCATCGCC
GTGGACGTAGAAGTTCCAGTTACAATAGACGTGGAAGAAATTTCTTCGAT
CAATATTGACGTCATCATCATCGTCGCTGTAGACTCTTCCATCGACTTCA
ATGCTCCATTTGATCCAAAGCTGAATGACTCATCAACGGAGGAATACAAA
AACTTCACTGAGGAATTCATCACTCAGGTGAAGCCATTCTACGATAAAAC
AGAAGGTTTTAAAGGCATCAATGTTACTGGTTTCGAGCCAGGCGAAAACC
CAAGCAACAAACGCAGGGCTCTTGGCGATTTGACTGTAGTCAACTATGAC
GTCGACTACAGCTACACTGAGCTGCAGAAAGAGGGTGGCATCGAACAAGT
GATCAGTTCAACTGAAATAATCAAGGCTATCGACGATGGATCATTGACTC
TTGGTGGCAAACCTGCACTTGCGGGATCTTACGTGAAACATACAAGTCAA
GCAGATCTTGACAACGAAGCCATCAATATCGTGCTTGAACAGATAAAAGA
TAATCCCGAAGATCTAAATTTATGTAAATTAGTAAAATGTCAACTTGGAT
ACGACCTCAACTGCTCATCACCAGTCGACGCTAGATGTGTTTCAACATGC
GCGTTCGACAAAAACTACTGCAAAAACTATGGGCAATGTGTTCACGTACC
AGGCCAAAACGTGTTATGCAATTGTGATGCTGACCCTACTGGCTTCTACA
TGGGAAACAAGTGCGAGTTCTACGCCTCTCAGACATTGGTGATTGGTTTG
GGGGCCACAGCTGGTGGTCTGCTGTTCATTATCATCATCACCCTGACGGC
TACTTCGCCTAGCGCCGCCACTAGTTCAGAAGCTACTACCAACACTCCAA
CTCCTGGAAAGCCAGAGACAAATAAGCCTATTTCTACAGAAAAACCCGAT
ATCATCGCCGTGGACGTAGAAGTTCCAGTTACAATAGACGTGGAAGAAAT
TTCTTCGATCAATATTGACGTCATCATCATCGTCGCTGTAGACTCTTCCA
TCGACTTCAATGCTCCATTTGATCCAAAGCTGAATGACTCATCAACGGAG
GAATACAAAAACTTCACTGAGGAATTCATCACTCAGGTGAAGCCATTCTA
CGATAAAACAGAAGGTTTTAAAGGCATCAATGTTACTGGTTTCGAGCCAG
GCGAAAACCCAAGCAACAAACGCAGGGCTCTTGGCGATTTGACTGTAGTC
AACTATGACGTCGACTACAGCTACACTGAGCTGCAGAAAGAGGGTGGCAT
CGAACAAGTGATCAGTTCAACTGAAATAATCAAGGCTATCGACGATGGAT
CATTGACTCTTGGTGGCAAACCTGCACTTGCGGGATCTTACGTGAAACAT
ACAAGTCAAGCAGATCTTGACAACGAAGCCATCAATATCGTGCTTGAACA
GATAAAAGATAATCCCGAAGATCTAAATTTATGTAAATTAGTAAAATGTC
AACTTGGATACGACCTCAACTGCTCATCACCAGTCGACGCTAGATGTGTT
TCAACATGCGCGTTCGACAAAAACTACTGCAAAAACTATGGGCAATGTGT
TCACGTACCAGGCCAAAACGTGTTATGCAATTGTGATGCTGACCCTACTG
GCTTCTACATGGGAAACAAGTGCGAGTTCTACGCCTCTCAGACATTGGTG
ATTGGTTTGGGGGCCACAGCTGGTGGTCTGCTGTTCATTATCATCATCAC
CCTGACGGCTACTTCGCCTAGCGCCGCCACTAGTTCAGAAGCTACTACCA
ACACTCCAACTCCTGGAAAGCCAGAGACAAATAAGCCTATTTCTACAGAA
AAACCCGATATCATCGCCGTGGACGTAGAAGTTCCAGTTACAATAGACGT
GGAAGAAATTTCTTCGATCAATATTGACGTCATCATCATCGTCGCTGTAG
ACTCTTCCATCGACTTCAATGCTCCATTTGATCCAAAGCTGAATGACTCA
TCAACGGAGGAATACAAAAACTTCACTGAGGAATTCATCACTCAGGTGAA
GCCATTCTACGATAAAACAGAAGGTTTTAAAGGCATCAATGTTACTGGTT
TCGAGCCAGGCGAAAACCCAAGCAACAAACGCAGGGCTCTTGGCGATTTG
ACTGTAGTCAACTATGACGTCGACTACAGCTACACTGAGCTGCAGAAAGA
GGGTGGCATCGAACAAGTGATCAGTTCAACTGAAATAATCAAGGCTATCG
ACGATGGATCATTGACTCTTGGTGGCAAACCTGCACTTGCGGGATCTTAC
GTGAAACATACAAGTCAAGCAGATCTTGACAACGAAGCCATCAATATCGT
GCTTGAACAGATAAAAGATAATCCCGAAGATCTAAATTTATGTAAATTAG
TAAAATGTCAACTTGGATACGACCTCAACTGCTCATCACCAGTCGACGCT
AGATGTGTTTCAACATGCGCGTTCGACAAAAACTACTGCAAAAACTATGG
GCAATGTGTTCACGTACCAGGCCAAAACGTGTTATGCAATTGTGATGCTG
ACCCTACTGGCTTCTACATGGGAAACAAGTGCGAGTTCTACGCCTCTCAG
ACATTGGTGATTGGTTTGGGGGCCACAGCTGGTGGTCTGCTGTTCATTAT
CATCATCACCCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000014 | genome | Sc0000014:4205601..4208998 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88877_cuf0 |
| Biotype | protein_coding |
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