transcript:BL88662_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL88662_cuf0
Unique Nametranscript:BL88662_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL88662_cuf0

>transcript:BL88662_cuf0-protein ID=transcript:BL88662_cuf0-protein|Name=transcript:BL88662_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=181bp
SSPGRTYITTAATTDITNQARTEITTVGTTDITLLDTTELSSSGTSDITT
VATTDITNTVTIEITTIGTTDITMVDTTEVTSQRTTDITTAAATDNTSPM
AKYTTTLDTTDIAIEDTTDGTTLSTTDITTATTDVTNKITTDITTAAATD
TTTPVTTKITTMGITDTTLLDTTTDMTSPGT
Run BLAST on NCBI

mRNA from alignment at Sc0000212:504595..505140+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL88662_cuf0 ID=transcript:BL88662_cuf0|Name=transcript:BL88662_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=546bp|location=Sequence derived from alignment at Sc0000212:504595..505140+ (Branchiostoma lanceolatum)
ATCAAGTCCAGGTAGAACATACATAACAACTGCAGCAACAACAGACATAA
CTAACCAAGCACGAACAGAGATCACAACCGTGGGTACCACTGATATCACT
CTCCTGGATACAACAGAGCTGTCAAGTTCAGGTACATCAGACATTACAAC
TGTAGCAACAACAGACATAACGAACACAGTAACAATTGAGATTACAACGA
TAGGTACAACTGATATCACGATGGTAGATACAACAGAGGTTACAAGTCAA
CGCACTACAGACATCACAACTGCAGCAGCAACAGACAATACAAGCCCAAT
GGCAAAATATACAACAACCCTTGATACGACTGATATCGCGATCGAAGATA
CGACAGATGGGACAACTTTAAGCACAACAGACATTACAACAGCTACAACT
GACGTAACTAACAAAATAACAACAGACATCACAACTGCAGCAGCAACAGA
CACAACTACCCCAGTAACAACGAAGATTACCACAATGGGTATAACTGATA
CCACTCTCCTAGATACAACAACAGATATGACAAGTCCAGGCACAAC

Coding sequence (CDS) from alignment at Sc0000212:504595..505140+

>transcript:BL88662_cuf0 ID=transcript:BL88662_cuf0|Name=transcript:BL88662_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=543bp|location=Sequence derived from alignment at Sc0000212:504595..505140+ (Branchiostoma lanceolatum)
TCAAGTCCAGGTAGAACATACATAACAACTGCAGCAACAACAGACATAAC
TAACCAAGCACGAACAGAGATCACAACCGTGGGTACCACTGATATCACTC
TCCTGGATACAACAGAGCTGTCAAGTTCAGGTACATCAGACATTACAACT
GTAGCAACAACAGACATAACGAACACAGTAACAATTGAGATTACAACGAT
AGGTACAACTGATATCACGATGGTAGATACAACAGAGGTTACAAGTCAAC
GCACTACAGACATCACAACTGCAGCAGCAACAGACAATACAAGCCCAATG
GCAAAATATACAACAACCCTTGATACGACTGATATCGCGATCGAAGATAC
GACAGATGGGACAACTTTAAGCACAACAGACATTACAACAGCTACAACTG
ACGTAACTAACAAAATAACAACAGACATCACAACTGCAGCAGCAACAGAC
ACAACTACCCCAGTAACAACGAAGATTACCACAATGGGTATAACTGATAC
CACTCTCCTAGATACAACAACAGATATGACAAGTCCAGGCACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL88662gene:BL88662Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL88662_cuf0-E1BL88662_cuf0-E1-1564476830-391498Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL88662_cuf0transcript:BL88662_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000212genomeSc0000212:504595..505140 +
Properties
Property NameValue
Transcript idBL88662_cuf0
Biotypeprotein_coding