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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88651_cuf1 >transcript:BL88651_cuf1-protein ID=transcript:BL88651_cuf1-protein|Name=transcript:BL88651_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=230bp
GRSMAGHEDIPFEYDFVLLYHEDDQDVAFDILESVEKNFSFRGFFWARDA
ILGRSVFDNLQESLELSRNVLCLLTPRFVDENWGNFQIENAVLNRLVSEN
KKNVVSVMLEECSVPRALQDTPPLKPEGRWYWSVLYRSLVKNSGPCPVSI
RSSAEKVFQAVQPEKGKAVDFCRNLGVPEVVCAEISAHAVGIRALLVQGL
NCWTKHVGMEGTDDMVDMALQKTLTGDGSQ Run BLAST on NCBI mRNA from alignment at Sc0000058:1398272..1402230+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88651_cuf1 ID=transcript:BL88651_cuf1|Name=transcript:BL88651_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3959bp|location=Sequence derived from alignment at Sc0000058:1398272..1402230+ (Branchiostoma lanceolatum)
TGGAAGGAGTATGGCGGGCCATGAAGATATTCCCTTCGAGTACGATTTCG
TCTTACTTTATCACGAAGATGACCAAGACGTCGCTTTTGACATCTTGGAA
TCCGTCGAGAAAAACTTTTCCTTCCGGGGATTCTTCTGGGCAAGGGACGC
CATTCTTGGAAGAAGCGTTTTTGACAATTTACAGGAAAGTCTTGAACTGA
GCAGAAATGTACTCTGTCTTCTTACACCAAGATTCGTTGACGAAAATTGG
GGGAATTTTCAGATAGAAAACGCTGTTCTGAACAGGCTAGTTAGTGAGAA
TAAGAAGAATGTTGTATCTGTAATGTTGGAGGAATGTTCCGTACCGCGTG
CTTTGCAGGATACCCCTCCTCTGAAGCCAGAAGGGCGTTGGTATTGGAGT
GTACTGTATAGGAGCCTGGTTAAAAACTCAGGTAAGGCCTAGGGAAATTA
ATGTGTTTTCGATCACAAAATTAGTGTCGATATATATATAAGAATACTTT
CCTTTTTTTCTTTTCTATTTGTTATTTTACAAGCCGAAGCCCAAGTGCTT
TTTCCATTGGAACAGAAACGAGGAGAATATGTTGGAAAATGATTCTACAA
CATTTTCAACCATGATGTTTATGTCCCTTGCAAGCAGCCAGCCCAAAACT
TCAAAAGGCTATAGCTAGGGTCGGCAGGTTTTATCTCCATGAAAAATGGA
GATATATCGTTTTGGGTGTGTCTGTGTGTGTGTGTTTGTCTGTCTGTTTG
TGTTTCCGCACTACTGTAGTCAGCATAACTCTGGAATCCATCCAATTCAA
GCTTCGCTCCTCTGATGAGAATGCAATAAGAATTAATTACTTTCCCAACT
TTCTTTTTTAAAATCTATTGTAAGCTGGCACAGATGACTTTTTAAAACAA
GGAGACAACCGCGCCAACTAACTCCCAAACACAGATGACCTTGCTTATGA
CTAACCATGGTCTAGAGAAGGTTGGGAGGCCATGGTTGGCTATGTGTTAC
AGGGGCTTTACTCGTGTCAAAATCATTAAAACGCATCTTCCAAAAAGTTA
TGCTGTCAAGAAACGCATCATTTTCCATCCATCCATGTTTCAACATTTGA
CATAAAACACCTTGACTTGGAAACATGTTGTGAATTCGATCCTCTTCAAG
GTGACCACCTGTCCAACGCAACCACTTTTTCTCGGTCCCCCGGGTGGTCG
CCTTGGGCAGGTTGGACTGTATATATATCAGTGTGTGACATTAGCTCAGT
AATTCCTTTATCTACTAGTAGTGAAACAAAGAAGCAAGTAGAACAGTCTC
CTGGCCCCCGAGATTCGAACCCGCACCGAAACCGGGCAGCCAGATCACAG
GCGTCACGCCTTAACCACTAGGCTAAAAGGTCTAGACCAGTTAGCTAGGG
TCGGCAGGTTTTATCTCCATGAAAAATGGAGATATATCGTTTTGGCTGTG
TCTGTGTGTGTGTGTTTGTCTGTCTGTTTGTGTTTCCGCACTACTCTAGT
CAGCATAACTCTGGAATCCATCCAATTCAAGCTTGTGGTGGTCAGTTGGA
GGCGCTTGAACCCCACTGTTACAGTAGTTAACTAGTCTTGCTTTTTTTCA
GGACCATGTCCAGTTTCCATAAGAAGTTCAGCAGAAAAGGTTTTTCAAGC
CGTCCAACCAGAAAAAGGAAAGGCCGTAGACTTCTGCAGGAACTTGGGCG
TCCCTGAAGTTGTTTGTGCGGAGATATCAGCCCACGCTGTCGGGATTCGA
GCACTCCTGGTGCAGGGGTTGAACTGTTGGACCAAACATGTAGGAATGGA
AGGGACAGATGATATGGTAGACATGGCTCTACAGAAAACACTTACAGGTA
ATACTGACCTGTTATTGAATTTCTTTATATTTTCATTTCAGGTATATTGA
CCCATAGATACTGTAAATGCATTTAAGTTTGCATGGTTTTATTTCGCTCT
AAGGCCACATCAATTTAATTTCTTGGTTAGCAGATTTTTTTTAATTTTAG
CAACAAAAAAAATCATGAAAACAGAAGGCTGGGGTGAAAACTTGCACCTG
ACCCTGTTCACTCCCTGAAATTGTGTGCACTAAAGTACAAACTTTCCTCT
GAGATTTTGTTTTCCTGTTGATTTTCCAATCAGCATTTTTTTAAAAATTG
CATTAACCAAGAAATTAAAATGGTGTGGCCTAAGACGAAAATGGGCTGTT
CGCAGTTGTTTTAAGTTTGCGGCAGCCCTATAGTCACAAACTGCTACAGT
ATTGGACAAAAATGTTGCGGTGGTTTTATTTAAGTTAGCAGAGAAATGGT
CGCCGCGAAAACCGGGAACATAAAACCACCGCAAACATTTCTGCATTTAC
AGTAATATGGACATAATACAAACTAAGTTAAAACTGCCAAAAAAGACCAC
TTGGTTAACATAAAATCTGGTCTATGTTGACAGGCAGTCACTATAGACAG
GATTCTTAATGTTTATATCAAGTTGTGTCAATGGGAAAAAAATGCGGTCA
CATTGGCAGGGTGGTCCTTATGTAGAGGTGGTCCCTTGTACAGGTTTGGC
TGTGGCTGGGTTTACACAATATCATGTGTTTTCGAGTCGAATCCGAGGCT
AGTGATATCTATCCAGCAAAGGCAAGATACACTTACAAATACCTACATTG
AATAAACACAGATGTTATATATATTGGTAGCAAATTACATTAATGTCTGG
TTCTATAGCCCTTGGGCCACACACTTGTGCAATAATTACAGCAGGGAGCT
AGTCCACTGGTAGTGGTGTGTGTTGAACTGAGTTGTTCTTAGTGCGGAGA
AAGTAGACAACTTTTTCTAATGTCTGTATGACCCGGGTTCGAACCCACAA
CCTCCTGAATGCGCAAATCTACATGAGATACTCCAATTAGTGTAATTCTT
GTCAGTGTTTCCTTTGCATACTTTATGTATGTCACAACATATAGCATACG
TTTCTCTGATAACTTTTCTTTTATATTGCTTTTTTTACAGGTGATGGCAG
CCAGTAACCATGGAACATTTCAGTGGACAACATTTGGTTCATGTGGCGAA
GAATGGTCCAATTCTACTTTCCAATGCGGCAATATCTTCCACACCAATAT
ATGACACCATTGTAACATCATATACTTTCATTTTGTGGTATTTGTTCACA
AGTATAGTTGTTTACCCATAATGTAACAGTACAAATTACTACAATATTCA
CTGGTATACAGTATGTTCTTGTAACCTTAGTGTACATAAAATGTATGTAA
GCATACCTTTGAGAAATACCAGTAGTTATCTCCATGAAAAATGGAGATAT
TGTTTTGGGTGTGTCTGTTTGTTTGTCTGTCTGTTTGTTTGTGTTTCAGG
ACTACTGTAGTCAGCATAACTCAAGAACCTCTTGATGGATTACGATGATA
TTTGGTATGTGGGCAGCTGTTATGAAGCCAAAATTCAAGGTCGATTTTGG
GCCCCCTGGTATGTGACCTTGGTACTGCAGCAGAAATTCCATTTTTGTAT
CTCTTGACCTGGACGTGCTGTGGTCTTGATTTTTTGGTGGCAGATAGCTT
GTGGTGTAATGAAGACGTGGTGTGGGTTTGGGCCCCCTAGTAGCTTGCTC
TGGAACTGCAGGGGCGTTATTGTGAAAATCTTTTAAGGATAATAACTGAA
CTAAGGAATGACAGATTTCCATGATATTAAGTACGCAGGTAGCTTAGACA
GAGATGTACACAATGAAGTGCAAATTATGTTAATTAGGACTTTATTTGCA
TAGCTAATGAGGAAAATCTATATTTGCAGTGTTTTCCATAATCAGACTCA
AATACATGTAACTTATATAGTTTATGGAAAGTGGATCATCAACAGATACC
AATTATGCAAATAAATTGCTAATTCGCATAATTAATGCAAAACACCATAT
CTCATCTAATTGGAAAATTATAGGACTGTCAATATGATACTTAGTATGCA
GGTAGCTTA Coding sequence (CDS) from alignment at Sc0000058:1398272..1402230+ >transcript:BL88651_cuf1 ID=transcript:BL88651_cuf1|Name=transcript:BL88651_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2079bp|location=Sequence derived from alignment at Sc0000058:1398272..1402230+ (Branchiostoma lanceolatum)
GGAAGGAGTATGGCGGGCCATGAAGATATTCCCTTCGAGTACGATTTCGT
CTTACTTTATCACGAAGATGACCAAGACGTCGCTTTTGACATCTTGGAAT
CCGTCGAGAAAAACTTTTCCTTCCGGGGATTCTTCTGGGCAAGGGACGCC
ATTCTTGGAAGAAGCGTTTTTGACAATTTACAGGAAAGTCTTGAACTGAG
CAGAAATGTACTCTGTCTTCTTACACCAAGATTCGTTGACGAAAATTGGG
GGAATTTTCAGATAGAAAACGCTGTTCTGAACAGGCTAGTTAGTGAGAAT
AAGAAGAATGTTGTATCTGTAATGTTGGAGGAATGTTCCGTACCGCGTGC
TTTGCAGGATACCCCTCCTCTGAAGCCAGAAGGGCGTTGGTATTGGAGTG
TACTGTATAGGAGCCTGGTTAAAAACTCAGGACCATGTCCAGTTTCCATA
AGAAGTTCAGCAGAAAAGGTTTTTCAAGCCGTCCAACCAGAAAAAGGAAA
GGCCGTAGACTTCTGCAGGAACTTGGGCGTCCCTGAAGTTGTTTGTGCGG
AGATATCAGCCCACGCTGTCGGGATTCGAGCACTCCTGGTGCAGGGGTTG
AACTGTTGGACCAAACATGTAGGAATGGAAGGGACAGATGATATGGTAGA
CATGGCTCTACAGAAAACACTTACAGGTGATGGCAGCCAGTAAGGAAGGA
GTATGGCGGGCCATGAAGATATTCCCTTCGAGTACGATTTCGTCTTACTT
TATCACGAAGATGACCAAGACGTCGCTTTTGACATCTTGGAATCCGTCGA
GAAAAACTTTTCCTTCCGGGGATTCTTCTGGGCAAGGGACGCCATTCTTG
GAAGAAGCGTTTTTGACAATTTACAGGAAAGTCTTGAACTGAGCAGAAAT
GTACTCTGTCTTCTTACACCAAGATTCGTTGACGAAAATTGGGGGAATTT
TCAGATAGAAAACGCTGTTCTGAACAGGCTAGTTAGTGAGAATAAGAAGA
ATGTTGTATCTGTAATGTTGGAGGAATGTTCCGTACCGCGTGCTTTGCAG
GATACCCCTCCTCTGAAGCCAGAAGGGCGTTGGTATTGGAGTGTACTGTA
TAGGAGCCTGGTTAAAAACTCAGGACCATGTCCAGTTTCCATAAGAAGTT
CAGCAGAAAAGGTTTTTCAAGCCGTCCAACCAGAAAAAGGAAAGGCCGTA
GACTTCTGCAGGAACTTGGGCGTCCCTGAAGTTGTTTGTGCGGAGATATC
AGCCCACGCTGTCGGGATTCGAGCACTCCTGGTGCAGGGGTTGAACTGTT
GGACCAAACATGTAGGAATGGAAGGGACAGATGATATGGTAGACATGGCT
CTACAGAAAACACTTACAGGTGATGGCAGCCAGTAAGGAAGGAGTATGGC
GGGCCATGAAGATATTCCCTTCGAGTACGATTTCGTCTTACTTTATCACG
AAGATGACCAAGACGTCGCTTTTGACATCTTGGAATCCGTCGAGAAAAAC
TTTTCCTTCCGGGGATTCTTCTGGGCAAGGGACGCCATTCTTGGAAGAAG
CGTTTTTGACAATTTACAGGAAAGTCTTGAACTGAGCAGAAATGTACTCT
GTCTTCTTACACCAAGATTCGTTGACGAAAATTGGGGGAATTTTCAGATA
GAAAACGCTGTTCTGAACAGGCTAGTTAGTGAGAATAAGAAGAATGTTGT
ATCTGTAATGTTGGAGGAATGTTCCGTACCGCGTGCTTTGCAGGATACCC
CTCCTCTGAAGCCAGAAGGGCGTTGGTATTGGAGTGTACTGTATAGGAGC
CTGGTTAAAAACTCAGGACCATGTCCAGTTTCCATAAGAAGTTCAGCAGA
AAAGGTTTTTCAAGCCGTCCAACCAGAAAAAGGAAAGGCCGTAGACTTCT
GCAGGAACTTGGGCGTCCCTGAAGTTGTTTGTGCGGAGATATCAGCCCAC
GCTGTCGGGATTCGAGCACTCCTGGTGCAGGGGTTGAACTGTTGGACCAA
ACATGTAGGAATGGAAGGGACAGATGATATGGTAGACATGGCTCTACAGA
AAACACTTACAGGTGATGGCAGCCAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000058 | genome | Sc0000058:1398272..1402230 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88651_cuf1 |
| Biotype | protein_coding |
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