transcript:BL88648_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL88648_cuf0
Unique Nametranscript:BL88648_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL88648_cuf0

>transcript:BL88648_cuf0-protein ID=transcript:BL88648_cuf0-protein|Name=transcript:BL88648_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=112bp
MKIKGATVHQNFANIRKLMQTLFTRCALGFRKRSARFVLGNSELGQTFGW
DVLGALRYVVISMKNGDIVISMKNGDIVLGVSVCVCVCMCVCVYVCMFVF
PHHSSQHNSRTS
Run BLAST on NCBI

mRNA from alignment at Sc0000058:1402746..1404016+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL88648_cuf0 ID=transcript:BL88648_cuf0|Name=transcript:BL88648_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1271bp|location=Sequence derived from alignment at Sc0000058:1402746..1404016+ (Branchiostoma lanceolatum)
TGTTAATTAGGACTTAATTTGCATAGCTAATGAGGAAAATCTATATTTGC
AGTGTTTTCCATTATCAGACTCAAATACATGTAACGTATGTAGTTTATGG
AAAGTGGATCATCAACAGATACCAATTATGCAAATAAATTCCTAATTTGC
ATAATTAATGCAAAACACCATATCTCATCTAATTGGAAAATTATAGGACT
GTCAATATGATACATAGTATGCAGGTAGCTTAGACAGAGATATACATAAT
GCAGTGCAAATTATGCTAATTGTGACTTAATTTGCATAGCTAATGAGGGA
AATCCATATTTGCAGTGTTTTCCATTATCAGACTCAAATACATGTAACAT
ATGTAGTTTATGGAAAGTGGAGCATCAACAGATACCAATTATACAAATGA
ATTCCTAATTTGCATAATTAATGCAAAAACACCACTATGAATCTAATTGG
AAAATTATAGGAGTCAATATTGCAACATGTGTAGGTTAGATAAAGGTGTT
TATAACCAAGCATATATTATGCAAATGTGTATATCATTTGCATGAATAGA
ATTGTTCATGGAGATATGAGGTCGTGGAACTCTTGTTGTAAATTGTTGCT
GGTTCGAACTTAAGTGGTAATGCGCTAAAGTAACACAATCTAGAGCGATA
CTTTGTACCTTAAGCAAGTATTCCTACTACAAACCCCATTATGTATGTAA
CAATAGTGTTCTACTTGATTAAGTATGAAACAAATAATGTTACACTATGC
GTACCTCAAAACGACCCTATACCGCTATCACCTTGCTTGTAGTACACTAC
CATCATGATATATCATAAAGAAGCGACTAAAGGTGCTCTAAAATGAATCA
GACATGTCGAGATTCACTTCTCCACTGCCATCACAACCTCATCCGAGGGT
CGGCTGGAAAACACAATACTCTTTGTTATTATGAAGATCAAAGGCGCTAC
AGTTCACCAAAACTTCGCAAACATTAGAAAATTGATGCAAACCTTGTTTA
CGAGATGTGCTCTGGGTTTTAGGAAACGATCTGCCCGATTTGTGCTGGGC
AATAGTGAACTGGGGCAAACTTTTGGATGGGATGTGCTCGGGGCTCTAAG
ATATGTTGTTATCTCCATGAAAAATGGAGATATAGTTATCTCCATGAAAA
ATGGAGATATTGTTTTGGGTGTGTCTGTCTGTGTGTGTGTGTGTATGTGT
GTATGTGTGTATGTGTGTATGTTTGTGTTTCCGCACCACTCCAGTCAGCA
TAACTCAAGAACCTCTTGATG

Coding sequence (CDS) from alignment at Sc0000058:1402746..1404016+

>transcript:BL88648_cuf0 ID=transcript:BL88648_cuf0|Name=transcript:BL88648_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=339bp|location=Sequence derived from alignment at Sc0000058:1402746..1404016+ (Branchiostoma lanceolatum)
ATGAAGATCAAAGGCGCTACAGTTCACCAAAACTTCGCAAACATTAGAAA
ATTGATGCAAACCTTGTTTACGAGATGTGCTCTGGGTTTTAGGAAACGAT
CTGCCCGATTTGTGCTGGGCAATAGTGAACTGGGGCAAACTTTTGGATGG
GATGTGCTCGGGGCTCTAAGATATGTTGTTATCTCCATGAAAAATGGAGA
TATAGTTATCTCCATGAAAAATGGAGATATTGTTTTGGGTGTGTCTGTCT
GTGTGTGTGTGTGTATGTGTGTATGTGTGTATGTGTGTATGTTTGTGTTT
CCGCACCACTCCAGTCAGCATAACTCAAGAACCTCTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL88648gene:BL88648Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL88648_cuf0-E1BL88648_cuf0-E1-1564476830-242299Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL88648_cuf0transcript:BL88648_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000058genomeSc0000058:1402746..1404016 +
Properties
Property NameValue
Transcript idBL88648_cuf0
Biotypeprotein_coding