transcript:BL88640_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL88640_cuf0
Unique Nametranscript:BL88640_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL88640_cuf0

>transcript:BL88640_cuf0-protein ID=transcript:BL88640_cuf0-protein|Name=transcript:BL88640_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=103bp
LRISAHCLEVEKGRHHNTPATQRLCPTCNGSVEDEFHFVMNCPTYSKERD
MLLQTIITKTNFTLSGTQSDIFYVLLSCPTPISMYIGQFLHKSFEKRDRI
THT
Run BLAST on NCBI

mRNA from alignment at Sc0000140:105667..106116+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL88640_cuf0 ID=transcript:BL88640_cuf0|Name=transcript:BL88640_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=450bp|location=Sequence derived from alignment at Sc0000140:105667..106116+ (Branchiostoma lanceolatum)
AGCTGAGAATCAGTGCACATTGCTTAGAAGTTGAAAAGGGTCGACACCAC
AACACACCAGCCACTCAGAGATTGTGTCCCACATGTAATGGAAGTGTTGA
GGATGAATTCCACTTTGTAATGAATTGTCCAACTTATAGCAAAGAGAGAG
ATATGCTTTTACAGACTATTATTACTAAAACAAACTTCACCCTATCTGGT
ACACAGAGCGATATTTTCTATGTACTGTTGTCATGTCCGACTCCTATATC
CATGTACATAGGTCAATTTCTCCATAAATCATTCGAAAAGCGAGACAGAA
TTACCCATACATGATTATATATTGTAACAAATACACTGGTTTCGAAAATA
TTTTGTACTTAGAATTGTAGGATAGATTAGCCTTGTAGTATTGTTGATTT
CATGCCATACATTGTACCATGTACGATTGTTGAGCAATAAAGTTCACTTC

Coding sequence (CDS) from alignment at Sc0000140:105667..106116+

>transcript:BL88640_cuf0 ID=transcript:BL88640_cuf0|Name=transcript:BL88640_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=312bp|location=Sequence derived from alignment at Sc0000140:105667..106116+ (Branchiostoma lanceolatum)
CTGAGAATCAGTGCACATTGCTTAGAAGTTGAAAAGGGTCGACACCACAA
CACACCAGCCACTCAGAGATTGTGTCCCACATGTAATGGAAGTGTTGAGG
ATGAATTCCACTTTGTAATGAATTGTCCAACTTATAGCAAAGAGAGAGAT
ATGCTTTTACAGACTATTATTACTAAAACAAACTTCACCCTATCTGGTAC
ACAGAGCGATATTTTCTATGTACTGTTGTCATGTCCGACTCCTATATCCA
TGTACATAGGTCAATTTCTCCATAAATCATTCGAAAAGCGAGACAGAATT
ACCCATACATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL88640gene:BL88640Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL88640_cuf0-E1BL88640_cuf0-E1-1564476830-340553Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL88640_cuf0transcript:BL88640_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000140genomeSc0000140:105667..106116 +
Properties
Property NameValue
Transcript idBL88640_cuf0
Biotypeprotein_coding