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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88634_cuf2 >transcript:BL88634_cuf2-protein ID=transcript:BL88634_cuf2-protein|Name=transcript:BL88634_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=426bp
MNFPRLSCCRSTIIKRQICHVIILYILVFGLILPPICYRLPFSIYYSQKL
YLWDLSPSVYARQVNDERIAKAEDFFASESVLARLQAESLLHGGNLSRSS
NVTDVRTTVAFLTTRRTRSFNPTEKYSPRYLLQTVAAIVQENQLSTRILI
CNMDPEPSAHTDAVYLSSFFSMVSRYGNGAVNVPNGKLEKEKQDYVYCLR
KSFETNPRYVLMLQDDALVVPGSLKVLDYIIRTKVERTRRGWDFTPNNDA
KRFLKLYMPEYIQRDFHTVKPKRIAANLAELIGYGLLGGTLIRLLHIVLV
EKGQSWTLLSGFFFSSVVCCILAALVISRPHLLELRRISKYLYVMLDAND
CCLPATLLPTAAAQELATFLEGVTCGGGYPLDTAVDEFVRSKGYRQFAVE
PNLFRHIGMYSTLHGGENTYLKHFVK Run BLAST on NCBI mRNA from alignment at Sc0000048:1345050..1349716- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88634_cuf2 ID=transcript:BL88634_cuf2|Name=transcript:BL88634_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4667bp|location=Sequence derived from alignment at Sc0000048:1345050..1349716- (Branchiostoma lanceolatum)
TGGTAATAAGGGTGGGAGGTCACAATGGCGGACGAGGCACGGTGGAGTGG
ATAATGTTTGTGGCTCGCTAGTTGTGCCCAGATTTCACATGAAACTGGTC
ATCCGGAGGCGCAAAAGACCGACACGCGCTCAGGTAAGTAGAATGTACTG
TAAGTCATAGCCATTACCACGCCGATACACCTGCTACTACATGATTGTAC
GTCCTGTGTATACACAGTGCAGTGACCCAGTGTGGTACAAAACGTTACTG
ATTATCGGACCCCAAGTACATGTATATCACTCCCGATACGAACCTGCTTT
ACACAGAACAAACTAGGGGGCCCAAATCTACACCACTTTTTTTTTATTAC
ACCACAAGCTATCTGCCACCCAAAAATCAAGACCATAGCACCGTAAGCAC
GTCCAGTTCAAAATATACAAAAATTGTTCTGCTGCAGTACCAAGGTCACA
TACCAGGGGGCCCAAAATCGACCTTGAATTTTGTCTTCACAACACCCGCT
CACATACCAAATATCATCGTAATCCATCCAGAGGTTCTTGAGTTATGCTG
ACTACAATAGTCCGGAAACACACAGAGAGAGACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACGCCAAAAACAATACATTGTATCTCCATTTTTCATGGATAATAA
ACACACGAACTCATGTGTAGGGTGGGCGTCCCGCCCAGCATCATCGACAT
CCACCTGCTTTATAATCATGGTACATGTATTTGCTGTGTATACATGACCC
GCGCCGATGCCACGGTGTGGTACAAAAATAGGTTTTCGTCACGCACCAAT
GCAACTGCCGAGAGCTGGCTCCGTGATTGTAGCTAAAAATTAGCCTCTAC
CAGGCTCCGTCCTATCGTTGGGAAAATAGTAGAAATCAGCCGAGGTACTC
CGCTATACAGGGTAGTCCGCTATACAGTGAAGTTACATTTCGATGGCAGA
TTGGACCCTCTCTCCGTAGCTAACTCCCTTGGCACACTATTCACTCTATT
AGGCCAATTTCTACTATTCTTCCAGCCATCCCACGGAGCCTGGTAGAGGC
TAGCTAAAAATACCAAGCATTAAGGTTAGGCTCCAACTTGTTTTTGATGT
TCGTGGCAGGCGAACAAAAAGAAAACCTGACCGTGAAAATAGAAAGCCCG
CCTAAAAATACGTCAAAAAGAAACCTGAGCCAAACATCTGCATGGAGAGT
ATTAAAAGCATAGCGCTAAACGAGCATATTCTTTGACTATTGAATATTAG
ATTGGGATGTTACTATCATCTTGAACATTGCCGTAAAAATATCTTTTATG
CCCCTACTTCAACCCACGTAGCCCTCTTATAAGGCTCTGTGAGTCGGGCG
TTTTTTTGTTGCTTATAATGTGCCTTTACTAGTATTTCTGATGCCGGTGG
CATACCAGTTCTAATACTCGATTTCTTGTTGTCTTGTGGACAGTCTATCA
GATCATATCATATATAACCTGATGAACGATGCTCACTTTTGAATTAGAGA
AATATGATCCGACCCCCGGAATGCCTCTTAAATAGGGGTGGGTACCGGTA
CCATGTACCGGTACAAAACCGGTATTTTTGTGTGGACCGGTCCAAAAGAA
CCGGTCCGAAAAAAATCAGTGGACCGGACTTTGCACCGATTAGAAAATTC
ACAGTACAAGACTACCTGCAGATGGTCACATAATGAAATATAATGATGTT
ATCGGTCTAAGAAAATAGAAAACAGCAGACTTAACGAGTCGTACTTGCTC
TTTTTCGAAGATGTTAGCTGTGAATCTTATCTAGAAACACCTAAAGGATG
AGTCAACACACGGCGAGGAGAGTATAGTTAATTTTAAGACAGTGCGAGAA
ATCATATCGTTCCAGACATGGCGTTATTGTCCGACACATGCATATCTTGT
AAATCACTCTCCAAAATATGGTGTACTGCTACACTACTATATAATCAGGT
ACAGGTTCAGGTCCGGACCTGACCCTCTGGACCTAAATTTTCTGTACCGG
TACCCACCCCTACTCTTAAACTTTAACTACAAACAGTGACTATTTTGTGA
AAAATAATGTAACTATCCAAAGCAATCCCGGCCCGATGTCGTGAATCTAC
ATTCATGACTACTTTCCAATTATTGTAAGGAATGCATGCTCCAAAAGTAA
TCAATCCGATATTCAGCGCCTGGTGTAAGACAATGCACGTTTGAATTCTG
TGTTTTACCTAGCCGCGGCGACTAATGAAGGGAGTTTTTGCTTGATATTA
CATATACTTTCCCAAGGGAAAGTATATGTAATATTATCAAGCAAAAACTC
CCTTCGTTAGTCGCCACGGCTATGTTTTACCGTTTGTACTGTGCGAACAC
AAACAAAGTTTATTTGCGTCACAGGTACACATGAAGTGGAACGTCAAATG
AGTCGTCATTGCAACTGCCCAAAAACAGGATCTCCAAACCGCTAGCAGTG
ACCGAATTCCTCAGACATAAGATAACGTTACATGGTTATGTTCCAGAGAT
GAACTTTCCACGGTTAAGTTGTTGCCGCTCTACAATCATCAAGAGACAGA
TCTGTCATGTTATCATTCTTTACATACTTGTGTTCGGCTTGATACTCCCG
CCCATTTGCTACCGACTCCCGTTCTCTATATACTACAGTCAAAAACTCTA
CCTGTGGGACTTGAGCCCAAGCGTTTACGCTAGACAAGTCAACGATGAGA
GAATCGCAAAGGCCGAGGACTTCTTCGCGTCTGAGTCAGTCTTGGCGCGT
CTTCAAGCTGAAAGTCTACTTCACGGCGGTAACTTAAGCAGAAGCAGCAA
CGTCACCGATGTCAGGACGACGGTTGCCTTCCTAACCACCCGAAGGACTC
GTTCGTTTAACCCCACTGAGAAGTATTCTCCTCGGTATCTCTTACAGACA
GTTGCTGCCATTGTCCAGGAGAATCAACTCAGCACTCGAATACTCATCTG
TAACATGGACCCTGAACCCTCCGCGCACACCGACGCAGTCTACCTGTCGT
CTTTCTTCTCTATGGTGTCAAGATACGGAAATGGCGCAGTCAACGTGCCA
AATGGTAAATTAGAGAAAGAAAAACAGGATTATGTTTACTGTCTGAGGAA
GAGTTTCGAGACGAATCCACGATACGTGCTCATGCTGCAAGACGACGCTT
TAGTTGTACCAGGCTCTCTCAAAGTTTTAGATTACATTATAAGAACTAAA
GTAGAAAGGACTCGTCGTGGTTGGGATTTTACCCCAAACAACGACGCGAA
GAGGTTTTTAAAACTTTACATGCCTGAGTATATCCAAAGAGATTTTCACA
CCGTTAAGCCAAAGCGTATCGCCGCTAACTTGGCGGAGTTGATCGGCTAT
GGGTTGCTCGGTGGAACTCTTATACGACTGTTACATATCGTACTTGTTGA
GAAAGGACAAAGTTGGACACTCCTGAGCGGATTCTTTTTCTCAAGTGTCG
TCTGTTGTATCTTAGCGGCCCTTGTGATTTCCAGACCGCATTTGTTGGAA
CTTAGGAGGATATCAAAGTACTTGTACGTTATGCTTGATGCCAACGATTG
TTGCCTGCCAGCGACTTTATTGCCAACTGCTGCAGCGCAAGAGTTGGCAA
CGTTCTTGGAGGGAGTGACGTGTGGTGGCGGGTACCCGTTAGACACAGCC
GTGGACGAATTCGTTAGGAGTAAGGGGTACCGACAATTTGCTGTGGAACC
CAACCTGTTCCGACATATCGGCATGTATTCAACCCTACATGGGGGCGAAA
ACACATATCTTAAACATTTCGTAAAGTGATGTCTTATTAAATAGTTCTAT
GAGCTTTTGAATGCAACTGTAAAAAGCTTAACTTTTAGGACTCTATATAT
TTATGAAATGTTGCAATATGTAGATATAATATATAGCTATTCAAAACGTC
TGGGATTTTATAAGGGACTACTTATTACAATTCAGTCTACAAAATTCCTC
ATTTACATGATAATAATTTAGCTTCCATTGCATCATGGTAGTCGATGCGA
TGCTTACCATCTTTTTACATTCATAGCAAACGGACATCACTTTTCTAGTG
TACACATGTTTGTACTCTATCAAACATGTACATGAATGTATATGTACTAC
GTAAATCTGTCATATCTGGACCAATAGTACAAATATGCAAAAGACTGCAT
CAAAATGATTTACTACTGCATCAGTAGTTGTTTTGTACTGTTTATGCCAT
TTGTAGGTACCTACATGTTCTCTGGCCACAGTGTCAAAACATGAATCAAT
AACATTGTAAATGTGTAAGGGACATGAGTTTTTAGAAGCTGTACTTAATA
TAATGAAAACCATCCACATTTTCTTACATAAATTAACATGAATGCAGCGT
TGGTCAATAAATGCTATGAATTTGCCAAATTCCTTCTGGGCTCTTTAGTG
CCTCTTGTATATCTGACAGTGTTGCAGATTGTTAGTTGTTAGTAATCATT
ACACTGAAGACTCATTGTATTGTACTGTGTGGATAAAAATATAGCAATAG
CACTATCAATGATATGTTTATTTTTGCAATAAGAAGGTGGCTCAAAGTAG
TTGTGTCACATCTGGTTGTCATTTAAATGGTTTATCATATCCAGAATTTC
TGTTTTTACTCTCTCGA Coding sequence (CDS) from alignment at Sc0000048:1345050..1349716- >transcript:BL88634_cuf2 ID=transcript:BL88634_cuf2|Name=transcript:BL88634_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1281bp|location=Sequence derived from alignment at Sc0000048:1345050..1349716- (Branchiostoma lanceolatum)
ATGAACTTTCCACGGTTAAGTTGTTGCCGCTCTACAATCATCAAGAGACA
GATCTGTCATGTTATCATTCTTTACATACTTGTGTTCGGCTTGATACTCC
CGCCCATTTGCTACCGACTCCCGTTCTCTATATACTACAGTCAAAAACTC
TACCTGTGGGACTTGAGCCCAAGCGTTTACGCTAGACAAGTCAACGATGA
GAGAATCGCAAAGGCCGAGGACTTCTTCGCGTCTGAGTCAGTCTTGGCGC
GTCTTCAAGCTGAAAGTCTACTTCACGGCGGTAACTTAAGCAGAAGCAGC
AACGTCACCGATGTCAGGACGACGGTTGCCTTCCTAACCACCCGAAGGAC
TCGTTCGTTTAACCCCACTGAGAAGTATTCTCCTCGGTATCTCTTACAGA
CAGTTGCTGCCATTGTCCAGGAGAATCAACTCAGCACTCGAATACTCATC
TGTAACATGGACCCTGAACCCTCCGCGCACACCGACGCAGTCTACCTGTC
GTCTTTCTTCTCTATGGTGTCAAGATACGGAAATGGCGCAGTCAACGTGC
CAAATGGTAAATTAGAGAAAGAAAAACAGGATTATGTTTACTGTCTGAGG
AAGAGTTTCGAGACGAATCCACGATACGTGCTCATGCTGCAAGACGACGC
TTTAGTTGTACCAGGCTCTCTCAAAGTTTTAGATTACATTATAAGAACTA
AAGTAGAAAGGACTCGTCGTGGTTGGGATTTTACCCCAAACAACGACGCG
AAGAGGTTTTTAAAACTTTACATGCCTGAGTATATCCAAAGAGATTTTCA
CACCGTTAAGCCAAAGCGTATCGCCGCTAACTTGGCGGAGTTGATCGGCT
ATGGGTTGCTCGGTGGAACTCTTATACGACTGTTACATATCGTACTTGTT
GAGAAAGGACAAAGTTGGACACTCCTGAGCGGATTCTTTTTCTCAAGTGT
CGTCTGTTGTATCTTAGCGGCCCTTGTGATTTCCAGACCGCATTTGTTGG
AACTTAGGAGGATATCAAAGTACTTGTACGTTATGCTTGATGCCAACGAT
TGTTGCCTGCCAGCGACTTTATTGCCAACTGCTGCAGCGCAAGAGTTGGC
AACGTTCTTGGAGGGAGTGACGTGTGGTGGCGGGTACCCGTTAGACACAG
CCGTGGACGAATTCGTTAGGAGTAAGGGGTACCGACAATTTGCTGTGGAA
CCCAACCTGTTCCGACATATCGGCATGTATTCAACCCTACATGGGGGCGA
AAACACATATCTTAAACATTTCGTAAAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000048 | genome | Sc0000048:1345050..1349716 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88634_cuf2 |
| Biotype | protein_coding |
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