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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88507_cuf2 >transcript:BL88507_cuf2-protein ID=transcript:BL88507_cuf2-protein|Name=transcript:BL88507_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=448bp
MAAAPLSLEEQIKEELSCSICLDLFTRPKVLPCQHTFCEACLHDHAARKR
AVFQCPNCRLRVRLPPKGVAGLPDNYLVSSLCERFEKQASLSEGTKDQSL
SAEKLSFIPSQQPQCNIAVGNDCFEEGQYDRNPVTNPVQAPEECITLVQG
QFTVSGNIVASETGHGKQKLSDHQLQKVTFGGKGQEEGLFNHPVGATVSE
EGEVFVADYGNQRIQVFTLRGEYISQFPTVVSSVEKMYPHDVAMDREGNL
WVVGCTDSAAYGVKYTREGRVLMKFGLQYTEWRRRTAVAVDTRRNHILVT
QTLGNRGNLHGEVLVFKSDGTHLRTVGWEQGMKVPCYITVDGEGNIIVSD
WGNCSVYVYNRDGEFLFKFREGESDEDQLWLPRGVCTDDIGNIFVADSGN
RLVKMFDKEGRFLTHIAALKEPWAVAMATNGQLVVTDWAKNIVNIFHN Run BLAST on NCBI mRNA from alignment at Sc0000034:37845..42677- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88507_cuf2 ID=transcript:BL88507_cuf2|Name=transcript:BL88507_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4833bp|location=Sequence derived from alignment at Sc0000034:37845..42677- (Branchiostoma lanceolatum)
GTCACCACAGGTTATTACCAGTAGGCAGGGCTGTCTCCAGCTTTACATTT
TTTCCGTTCTGCTTGTTGTTTTGTAGCCCATCCTGTTGATTTTCCTAGGT
AAATCTGTCATTTGAAGCTTACAACAATACATTTTCAGCAATTTCATGCC
AAAAGATTCAGATTTTAGGACGGACAGGGTGAACTTTTTTTCCGTCCCAA
GAAGCAAATTTCCGTCCTGGGACAAAGGGACGTGTCCTGGAGACAGCCCT
CAGTAGGACTGTTTTACCGGACGTGACCCGACCAGTTTCACGTGACCGAC
AAAGAGGCCAGGCCAGGTGGTCGCTGGTCCCTCCACGCCCTGGGGGTCAG
GTGACAACGTGGACATGAATATTCAGGAGGGTAGCTGCTGCTGGGTTTGA
GTGTGTCATGACCTGAAGACCGAAGCAGGAACTTGACATTGTCAAGAAGA
CTTGCTTGCATGCCTGTTGAGGCCAGGTTAGTTTTGAACCCATTTCTGTC
CAGAAAAAGATTCGGGCTGTATCTCTATATTTATCTATGATTATTCAGGA
GGGCAGCAGCTGCTGGGTTTGAGTGTGTCATGACCTGAAGACCGAAGCAG
GAACTTGACATTGTCAAGAAGACTTGCTTGCATGCCTGTTGAGGCCAGGT
TAGTTTTGAACCCATTTCTGTCCAGAAAAAGAAGGGCTATATCTATTTAT
TTATCTATAAATTTTAAAGGTAGTCCCTTAAGTTGACTGAGTAACTGATT
TCCAAGGGAGCCCTTTGTAATGTATGGGGCCTGCATGCCCCTTGTCCATA
AGGCGTAAGCAAGCTACACGTATTTTGATTTCCCATATTTGTAGGAAAAG
CCTTCTAATTCACATGCTCTATAGCAAGATGAACCAAATTCTGTGCTTTC
TTTTCTTGATTCATTGTAATATGTAGGCGGTTGTCCTGAATTCAGTATAC
AGCGTTGTCGGCCCCCCTCCCAACACAGACCCCCTATTGTATGGATCAGG
GCTGCAGCTGCACAAAGTGACACATCATTATTTAAGTCACTGAGGTAAAT
GGACAATCTGAAGGTCACTACAATCAAGTGGGTTAGATACTGGATTAAGT
AGAAAGAGGCTTGTTTAAGTGACAAGAAGGCAGCCTGAAGGCACATACTA
GTAGAAGATTTTACAGAAGCATTCAGAAAATGACGAAAATATTTCAGTTG
AGAAATTTCATGCTCTCATCATCTAGATCTGTGGTATGCCTAAACACCTC
ACCCGACCTCACCCAGACTCGCCCTGGTCTAATATGCAGTTTGAATGGGG
CAGTGATGGAGCCACTTACCAGTGATGGGTGAAAGAGAACACGCTATAGT
GACTGTGTGAACATTAACCGACTAGGTAAAATATGGCGACATAATTATTC
TATTCATCAAAAGTTAGATAAAAGCAATACATCTAAAAACGGGAATGCAA
GACGACAATAAGGGTCCAACAGTGCGACATTCAGGCAGAGCACATACATA
CCGTACGGTAGTACATGTAAAATATTCTATAAGCTCACTTTAAAAAGATA
ATATACACATACATACCGTATAATCATAATGATATATAGGTATAATAGTA
TATATAATCATATATACATTTACTTATTGATATCAGAGTCACAGACAATC
ACTGGCACATATATAGCATTGAGTCCTTATAGATGAGCCCTCTAGTGATT
TTTATCCAAACTGCAGCTTCCTTTTTCAACTGTCATGTGACTTCCTCAGC
AATTCCAAGATGGCAGCTGTTTTGTTTAGGTCGGCAGGGAACTGAAAATG
TTTTATTTAGGAATGGATTTATGAGAATCTAGAACTCTAAAACAAGTTGT
CTGTGGGTGCACAAGAGACAAAAGCTGCTGGTAACCTAATTTTTGGATTG
TTTGGGCGTTGGTTTCAATACTTTGGGTGAAAATTTACGTCAGAGAAAAT
GTGGGAGGGGGGCGCTGGGATAATTTTTTAACACTACTTTATATGCATAC
ATTCTGGTCACGTGCTTACCACATACTCTTTTGTATTCACAGGTTAGCAA
GCAGAGGCGTTACATTGTATCTTGCAGGACTGACGTTACAAGGTGAAGAA
AAGTCGACAACATGGCTGCTGCACCATTAAGTTTGGAGGAACAAATCAAG
GAAGAACTGTCCTGTAGCATCTGCTTGGACCTCTTCACCCGGCCCAAGGT
GCTGCCCTGTCAGCACACCTTCTGTGAGGCCTGCCTTCATGACCATGCAG
CGAGAAAACGAGCGGTCTTCCAGTGTCCAAACTGCCGTCTGAGAGTCCGT
CTACCGCCTAAGGGGGTTGCAGGACTGCCAGACAACTACCTGGTCTCAAG
TCTGTGTGAGAGATTTGAAAAGCAGGCATCACTGTCCGAAGGAACAAAGG
ACCAATCCCTATCTGCAGAAAAGCTCAGCTTCATCCCCTCTCAGCAGCCA
CAGTGCAACATAGCTGTTGGTAATGATTGTTTTGAAGAAGGCCAGTATGA
CAGAAACCCTGTCACAAATCCTGTACAAGCCCCAGAAGAATGTATCACTC
TAGTTCAGGGCCAGTTCACTGTGAGTGGGAACATTGTAGCAAGTGAAACA
GGGCACGGTAAGCAAAAGCTAAGCGATCACCAGCTTCAGAAGGTCACGTT
TGGTGGGAAGGGCCAAGAGGAAGGACTGTTCAACCACCCTGTCGGTGCTA
CAGTGTCAGAGGAAGGGGAAGTCTTTGTGGCGGACTATGGGAACCAGAGA
ATCCAAGTCTTCACTCTACGTGGAGAATACATCTCACAGTTCCCAACAGT
CGTGTCGAGTGTGGAGAAGATGTACCCGCACGACGTGGCCATGGACAGGG
AGGGGAACCTGTGGGTGGTGGGGTGCACGGACTCTGCTGCCTATGGCGTG
AAGTATACCAGAGAGGGCAGGGTGCTGATGAAGTTTGGCCTGCAGTACAC
AGAGTGGAGACGTAGGACCGCAGTTGCTGTGGACACCAGGAGGAACCACA
TCCTCGTCACACAAACCCTTGGGAACAGGGGCAACCTACATGGTGAAGTG
CTCGTGTTTAAGAGCGACGGCACGCATCTGCGAACTGTTGGCTGGGAGCA
AGGGATGAAGGTTCCGTGTTACATCACTGTGGATGGAGAGGGGAACATCA
TTGTGTCTGACTGGGGCAACTGCAGTGTCTATGTCTACAACAGGGACGGA
GAGTTTCTGTTCAAGTTTAGAGAAGGAGAAAGTGATGAGGACCAGTTGTG
GCTACCCCGCGGCGTCTGTACGGATGACATCGGCAACATCTTTGTGGCAG
ACAGTGGAAACAGACTTGTGAAGATGTTCGACAAGGAAGGCAGGTTCCTC
ACACACATCGCGGCCTTGAAGGAACCGTGGGCTGTTGCCATGGCAACAAA
CGGACAGTTGGTGGTGACTGACTGGGCAAAGAATATCGTCAATATATTCC
ACAACTAAACTCTAAAGAGTCTGAGTGAACTTATAGCTTTTGAGATCTCT
TTTTAAATTTACTTTGCAGATCTAAGCATTTTTTCTACTTATGTTTAAAT
TGGTACTTTAGAAAGTACCTCCAGTCGTACCAATAGCCAGTAATAATGTT
TCTACTCATGTTTAAATTGGTACTTAGAATCAAAGTACCTCCAGTCTGAC
TACTAGCCAGTAATGTTTCTTAGACTACTCATGTTTAAATCGGTAATTAG
AAAGTACCTCCAGTCATACTACTAGCCAGTAACGTTTCTACTCATGTTTA
AATCTGTACTTAGAATCAAAGTACCTCCAGTCTGACTACTAGCCAGTAAT
ATTTCTTAGACTACTCATATTTAAATCGGTACTTAGAAAGTACCTCCAGT
CATACCACCGGTCAGTAATGTTTCTACTCATATTTAAATTGGTACTTAGA
AAGTACCTCCAGTCATACTACTAGCCAGTAATGTTTCTACTCATGTTTAA
ATCTGTACTTAGAAAGTACATCCAGCCATACCACTGGTCAGTAATGTTTC
TACTTAATGTTTAAATGTTTACAGAAGAACTTTATTGCGCGACTATTGTA
GCAGGTACAAAGTATGGCAACAACAGAAAGTACATCCAGTCTGTTCACTG
GCCAGTAACTTTTCTACGTTTTGTTTAGATCATTAAAAAATGCAAAAATC
ATTTAGATACAAGTCCAAGATACTTGAACATCAATGTGTACATACTGTAC
CTCAATAGACATGTACAATGTATACACTCAAGTTACACGTATACTCTTAT
TTTGTTTCTAAAATTATGTGGTAGATCTTGTTTCTTTACTTTTCACTCTC
ATAGATAGGTTTGAGATCGCTTCCATAATTTTTACAGGGTGTGGCCAGTA
GGGTTGTATACCCATTAGAAAAACTTGTTGTTGAGGTACAGGACTGGTAG
CATCAATGTGGAGATACTGTACCTGAATAGACATGTATGCAATAGTATGA
CAAGTATTATATGACGTATATGCTTATTTTGTTACTGAAACGCAAAAATA
TTTCAGGTCCAAAATAGCGGACCACCAATGTGAAGAAACTATCTGAATAG
ACATGTATACACTCAAGTTTATACTTATTTTGTTTTTGTGTCACGTTAAA
GATCTCGGTTTATACTTTTCACTGAGTCTCTCACATATTAGTTTCGAGGT
CTCTTCTATAACTGGTATAAGACGTATGTAGTGTGGCCAGTAGGGTTGTA
TTCACATTAAAGATAATGCAAAAATCATTTAGACACAGGTCCAAAATACC
CAAACATCTTATGCTTTGCACCTGAATAGACTTATATACACTCATACTCA
AGTATACTGTACTTATTTTGTTATTAAAAATTA Coding sequence (CDS) from alignment at Sc0000034:37845..42677- >transcript:BL88507_cuf2 ID=transcript:BL88507_cuf2|Name=transcript:BL88507_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1347bp|location=Sequence derived from alignment at Sc0000034:37845..42677- (Branchiostoma lanceolatum)
ATGGCTGCTGCACCATTAAGTTTGGAGGAACAAATCAAGGAAGAACTGTC
CTGTAGCATCTGCTTGGACCTCTTCACCCGGCCCAAGGTGCTGCCCTGTC
AGCACACCTTCTGTGAGGCCTGCCTTCATGACCATGCAGCGAGAAAACGA
GCGGTCTTCCAGTGTCCAAACTGCCGTCTGAGAGTCCGTCTACCGCCTAA
GGGGGTTGCAGGACTGCCAGACAACTACCTGGTCTCAAGTCTGTGTGAGA
GATTTGAAAAGCAGGCATCACTGTCCGAAGGAACAAAGGACCAATCCCTA
TCTGCAGAAAAGCTCAGCTTCATCCCCTCTCAGCAGCCACAGTGCAACAT
AGCTGTTGGTAATGATTGTTTTGAAGAAGGCCAGTATGACAGAAACCCTG
TCACAAATCCTGTACAAGCCCCAGAAGAATGTATCACTCTAGTTCAGGGC
CAGTTCACTGTGAGTGGGAACATTGTAGCAAGTGAAACAGGGCACGGTAA
GCAAAAGCTAAGCGATCACCAGCTTCAGAAGGTCACGTTTGGTGGGAAGG
GCCAAGAGGAAGGACTGTTCAACCACCCTGTCGGTGCTACAGTGTCAGAG
GAAGGGGAAGTCTTTGTGGCGGACTATGGGAACCAGAGAATCCAAGTCTT
CACTCTACGTGGAGAATACATCTCACAGTTCCCAACAGTCGTGTCGAGTG
TGGAGAAGATGTACCCGCACGACGTGGCCATGGACAGGGAGGGGAACCTG
TGGGTGGTGGGGTGCACGGACTCTGCTGCCTATGGCGTGAAGTATACCAG
AGAGGGCAGGGTGCTGATGAAGTTTGGCCTGCAGTACACAGAGTGGAGAC
GTAGGACCGCAGTTGCTGTGGACACCAGGAGGAACCACATCCTCGTCACA
CAAACCCTTGGGAACAGGGGCAACCTACATGGTGAAGTGCTCGTGTTTAA
GAGCGACGGCACGCATCTGCGAACTGTTGGCTGGGAGCAAGGGATGAAGG
TTCCGTGTTACATCACTGTGGATGGAGAGGGGAACATCATTGTGTCTGAC
TGGGGCAACTGCAGTGTCTATGTCTACAACAGGGACGGAGAGTTTCTGTT
CAAGTTTAGAGAAGGAGAAAGTGATGAGGACCAGTTGTGGCTACCCCGCG
GCGTCTGTACGGATGACATCGGCAACATCTTTGTGGCAGACAGTGGAAAC
AGACTTGTGAAGATGTTCGACAAGGAAGGCAGGTTCCTCACACACATCGC
GGCCTTGAAGGAACCGTGGGCTGTTGCCATGGCAACAAACGGACAGTTGG
TGGTGACTGACTGGGCAAAGAATATCGTCAATATATTCCACAACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000034 | genome | Sc0000034:37845..42677 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88507_cuf2 |
| Biotype | protein_coding |
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