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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88413_cuf0 >transcript:BL88413_cuf0-protein ID=transcript:BL88413_cuf0-protein|Name=transcript:BL88413_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=836bp
HEGSYTCSCDDGFQLIHSTDCVTSTTPTIGITTVKTPTITTESVSHSATA
ATSTVDKSTANPPQRTTSTTASSSHTSSTDPAPTTTTTATITTAHCYNPC
IHGTCVDTNVCECEPGWEGKDCSQAHCYHPCVHGTCKDVNVCECDPGWGG
EDCSQDIDECWLGTHDCDHTCDNNEGSYTCSCDSGFQLVDSIQCVVSTTE
SVSHGTTDRTSTVDKTTTVTSPAQITTTKRPLKITEIADPRTSTLNKTTT
KITTTQPQSPTETVTTPTTDRTTAQQVQSTARTTASGFHTSSTVRTSHVD
RTTAEQPQRTTATGLHTTSIATTPTNDKTPAPSSQTATETTADILDRTST
TDITTAQPLQTTTLTATTTTSAADSITAQPSERTIRTTASRLHTALIDTT
TASRADIITTTMQPPRTPDTVTLRTSIEDRTTEKPPPRTARTTASGLHTR
SMATATVVDRTTANTPQTTEITISSLHTSSTTIKTDTTTARQSLRTTSTA
TARGSTLDSTTAQPTQRTTANGLHTSTVDKTTAQIPQTSTASGLHTSSTA
TITTADITTARRPQAPTDTATARTTTLARTTQLPQRTTGTAARRLPTTST
TKTAADITTASQPLIISETPTSTADGTTAKRLQKNTRATASSFQTSTAAS
TSTADITTARLPQRTTDTAASILDRTATQPPQRTTKTTERGFHSSTTAKT
TPTANILTILRSLRTIETTNARSTMDWTTSQPTRTKPSSLQTTSADMPTT
TADVTTARQQLRNTDTTTVRTSTVDRTTTQQTRTTAIKSTGDVTIAINPL
RTTTESVTSSRTSTADRTMAQPPQRTTASVLHPSPT Run BLAST on NCBI mRNA from alignment at Sc0000066:1391067..1393873+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88413_cuf0 ID=transcript:BL88413_cuf0|Name=transcript:BL88413_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2807bp|location=Sequence derived from alignment at Sc0000066:1391067..1393873+ (Branchiostoma lanceolatum)
CCACGAAGGCTCCTACACCTGTTCCTGTGACGACGGCTTCCAACTCATCC
ATTCCACTGACTGCGTCACCTCTACAACCCCCACCATCGGCATTACAACG
GTCAAGACTCCAACGATTACCACAGAGAGTGTATCGCACAGTGCCACAGC
TGCAACATCAACTGTGGATAAGTCAACAGCAAACCCACCACAGCGAACCA
CCAGTACCACTGCTAGCAGTTCGCACACAAGTTCCACCGACCCAGCACCG
ACAACAACAACAACAGCAACAATAACAACAGCCCATTGCTACAACCCGTG
TATACACGGTACCTGTGTGGACACGAACGTCTGCGAGTGCGAGCCTGGTT
GGGAAGGAAAAGATTGTAGTCAAGGTATTGTGTTTTAATTGTAGCCAAGG
ATATGTGTTTCTTGATTAGAAACACCTTCAATATGATTTCCACGTCTCCT
ATCTGAATGCATCATGTGTTTATTGTGTTAGTTGCTATTTCAGCTCATTG
CTACCACCCATGTGTACACGGCACCTGTAAAGACGTAAACGTCTGCGAAT
GTGATCCTGGCTGGGGAGGAGAAGACTGTAGTCAAGGTAAGATGTTTCTT
TACAATGCTGTAACGCAAGTAAGCAAATAAGTCAGCAGAAGGTTTCCAGT
TTCCCTCCAGGTAGAAGTTATTGAGGATGAAGTCATAAAATACTAACGTT
ACCTCTTGACTTGTTTGGTTAATAAACAGATAATTAGACTGCCGAATATA
CATTTTCACGACAGACATTGACGAGTGCTGGCTCGGGACTCACGACTGTG
ACCACACCTGTGATAACAACGAGGGCTCCTACACCTGCTCCTGTGACAGC
GGATTCCAACTCGTCGATTCTATACAGTGTGTTGTCTCTACAACAGAGAG
TGTTTCACACGGAACTACCGACAGAACATCAACTGTGGACAAGACAACAA
CTGTTACATCACCAGCGCAAATTACAACTACAAAACGTCCACTGAAGATC
ACAGAAATTGCCGATCCAAGAACATCAACTTTGAACAAGACAACGACAAA
AATTACTACAACACAACCACAGAGCCCCACTGAAACTGTCACAACACCAA
CTACGGACAGGACAACAGCGCAACAAGTACAGAGTACGGCCAGGACCACG
GCTAGCGGTTTTCACACAAGTTCCACTGTCAGAACATCACATGTGGACAG
GACAACAGCAGAACAACCACAAAGGACCACAGCTACTGGTTTACATACAA
CATCCATAGCCACAACACCCACTAACGACAAGACACCAGCACCATCTTCA
CAGACTGCCACCGAGACCACAGCTGACATTTTAGACAGAACATCAACAAC
CGACATTACAACAGCACAACCATTACAGACGACTACTTTAACAGCTACAA
CAACAACATCGGCAGCCGACAGCATAACGGCACAACCATCAGAGAGAACC
ATCAGGACCACAGCTAGCCGTTTACATACAGCTTTGATAGATACAACAAC
AGCATCAAGAGCCGACATCATAACTACCACAATGCAACCACCGAGGACCC
CAGATACTGTCACGTTAAGAACATCGATTGAGGACAGGACTACAGAAAAA
CCACCACCGAGAACCGCCAGAACTACAGCTAGCGGTTTGCATACAAGGTC
CATGGCCACAGCAACAGTTGTAGACAGAACAACAGCAAATACTCCACAGA
CCACCGAGATCACTATTAGCAGTTTACATACTAGTTCCACAACAATAAAA
ACCGACACCACAACAGCAAGACAATCGCTGAGGACGACAAGCACTGCCAC
GGCCAGAGGTTCAACTTTAGACAGTACAACAGCCCAGCCTACACAACGAA
CAACAGCTAACGGTTTACATACATCAACTGTGGACAAGACAACAGCACAA
ATACCACAAACGTCTACAGCTAGTGGTTTACATACAAGTTCCACAGCCAC
AATAACAACCGCCGACATTACAACGGCAAGACGTCCACAGGCACCCACAG
ACACTGCCACGGCGAGAACAACAACTTTGGCTAGAACAACACAGCTACCA
CAGAGAACCACCGGGACCGCAGCTCGCCGTTTACCTACAACCTCCACAAC
CAAAACAGCAGCCGACATTACAACGGCTAGTCAACCACTGATCATTTCAG
AAACTCCCACTTCCACTGCAGACGGGACGACAGCAAAACGTCTACAGAAG
AACACCAGGGCCACAGCTAGCAGTTTTCAGACGAGCACTGCAGCCAGCAC
ATCGACAGCCGACATTACAACAGCAAGACTTCCACAGAGGACCACAGACA
CTGCAGCATCGATATTGGACAGGACAGCAACACAACCACCACAGAGAACC
ACCAAGACCACAGAAAGAGGTTTCCACTCAAGTACCACGGCCAAGACTAC
ACCGACGGCGAACATTCTAACCATATTACGATCACTGAGGACCATAGAAA
CTACCAATGCCAGATCAACTATGGACTGGACAACATCACAGCCGACAAGG
ACCAAACCGAGTAGTTTACAGACAACTTCTGCAGATATGCCAACGACAAC
AGCTGATGTTACAACAGCTAGACAACAATTAAGGAACACTGATACTACCA
CTGTCAGAACATCAACCGTTGACAGAACAACGACACAGCAAACAAGGACA
ACTGCCATAAAATCAACTGGCGATGTTACAATAGCAATAAATCCACTGAG
GACCACCACAGAAAGTGTCACTTCCAGCAGAACATCAACTGCGGACAGAA
CAATGGCACAACCTCCACAGAGAACCACAGCTAGCGTTTTACACCCAAGC
CCCACAG Coding sequence (CDS) from alignment at Sc0000066:1391067..1393873+ >transcript:BL88413_cuf0 ID=transcript:BL88413_cuf0|Name=transcript:BL88413_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=7524bp|location=Sequence derived from alignment at Sc0000066:1391067..1393873+ (Branchiostoma lanceolatum)
CACGAAGGCTCCTACACCTGTTCCTGTGACGACGGCTTCCAACTCATCCA
TTCCACTGACTGCGTCACCTCTACAACCCCCACCATCGGCATTACAACGG
TCAAGACTCCAACGATTACCACAGAGAGTGTATCGCACAGTGCCACAGCT
GCAACATCAACTGTGGATAAGTCAACAGCAAACCCACCACAGCGAACCAC
CAGTACCACTGCTAGCAGTTCGCACACAAGTTCCACCGACCCAGCACCGA
CAACAACAACAACAGCAACAATAACAACAGCCCATTGCTACAACCCGTGT
ATACACGGTACCTGTGTGGACACGAACGTCTGCGAGTGCGAGCCTGGTTG
GGAAGGAAAAGATTGTAGTCAAGCTCATTGCTACCACCCATGTGTACACG
GCACCTGTAAAGACGTAAACGTCTGCGAATGTGATCCTGGCTGGGGAGGA
GAAGACTGTAGTCAAGACATTGACGAGTGCTGGCTCGGGACTCACGACTG
TGACCACACCTGTGATAACAACGAGGGCTCCTACACCTGCTCCTGTGACA
GCGGATTCCAACTCGTCGATTCTATACAGTGTGTTGTCTCTACAACAGAG
AGTGTTTCACACGGAACTACCGACAGAACATCAACTGTGGACAAGACAAC
AACTGTTACATCACCAGCGCAAATTACAACTACAAAACGTCCACTGAAGA
TCACAGAAATTGCCGATCCAAGAACATCAACTTTGAACAAGACAACGACA
AAAATTACTACAACACAACCACAGAGCCCCACTGAAACTGTCACAACACC
AACTACGGACAGGACAACAGCGCAACAAGTACAGAGTACGGCCAGGACCA
CGGCTAGCGGTTTTCACACAAGTTCCACTGTCAGAACATCACATGTGGAC
AGGACAACAGCAGAACAACCACAAAGGACCACAGCTACTGGTTTACATAC
AACATCCATAGCCACAACACCCACTAACGACAAGACACCAGCACCATCTT
CACAGACTGCCACCGAGACCACAGCTGACATTTTAGACAGAACATCAACA
ACCGACATTACAACAGCACAACCATTACAGACGACTACTTTAACAGCTAC
AACAACAACATCGGCAGCCGACAGCATAACGGCACAACCATCAGAGAGAA
CCATCAGGACCACAGCTAGCCGTTTACATACAGCTTTGATAGATACAACA
ACAGCATCAAGAGCCGACATCATAACTACCACAATGCAACCACCGAGGAC
CCCAGATACTGTCACGTTAAGAACATCGATTGAGGACAGGACTACAGAAA
AACCACCACCGAGAACCGCCAGAACTACAGCTAGCGGTTTGCATACAAGG
TCCATGGCCACAGCAACAGTTGTAGACAGAACAACAGCAAATACTCCACA
GACCACCGAGATCACTATTAGCAGTTTACATACTAGTTCCACAACAATAA
AAACCGACACCACAACAGCAAGACAATCGCTGAGGACGACAAGCACTGCC
ACGGCCAGAGGTTCAACTTTAGACAGTACAACAGCCCAGCCTACACAACG
AACAACAGCTAACGGTTTACATACATCAACTGTGGACAAGACAACAGCAC
AAATACCACAAACGTCTACAGCTAGTGGTTTACATACAAGTTCCACAGCC
ACAATAACAACCGCCGACATTACAACGGCAAGACGTCCACAGGCACCCAC
AGACACTGCCACGGCGAGAACAACAACTTTGGCTAGAACAACACAGCTAC
CACAGAGAACCACCGGGACCGCAGCTCGCCGTTTACCTACAACCTCCACA
ACCAAAACAGCAGCCGACATTACAACGGCTAGTCAACCACTGATCATTTC
AGAAACTCCCACTTCCACTGCAGACGGGACGACAGCAAAACGTCTACAGA
AGAACACCAGGGCCACAGCTAGCAGTTTTCAGACGAGCACTGCAGCCAGC
ACATCGACAGCCGACATTACAACAGCAAGACTTCCACAGAGGACCACAGA
CACTGCAGCATCGATATTGGACAGGACAGCAACACAACCACCACAGAGAA
CCACCAAGACCACAGAAAGAGGTTTCCACTCAAGTACCACGGCCAAGACT
ACACCGACGGCGAACATTCTAACCATATTACGATCACTGAGGACCATAGA
AACTACCAATGCCAGATCAACTATGGACTGGACAACATCACAGCCGACAA
GGACCAAACCGAGTAGTTTACAGACAACTTCTGCAGATATGCCAACGACA
ACAGCTGATGTTACAACAGCTAGACAACAATTAAGGAACACTGATACTAC
CACTGTCAGAACATCAACCGTTGACAGAACAACGACACAGCAAACAAGGA
CAACTGCCATAAAATCAACTGGCGATGTTACAATAGCAATAAATCCACTG
AGGACCACCACAGAAAGTGTCACTTCCAGCAGAACATCAACTGCGGACAG
AACAATGGCACAACCTCCACAGAGAACCACAGCTAGCGTTTTACACCCAA
GCCCCACACACGAAGGCTCCTACACCTGTTCCTGTGACGACGGCTTCCAA
CTCATCCATTCCACTGACTGCGTCACCTCTACAACCCCCACCATCGGCAT
TACAACGGTCAAGACTCCAACGATTACCACAGAGAGTGTATCGCACAGTG
CCACAGCTGCAACATCAACTGTGGATAAGTCAACAGCAAACCCACCACAG
CGAACCACCAGTACCACTGCTAGCAGTTCGCACACAAGTTCCACCGACCC
AGCACCGACAACAACAACAACAGCAACAATAACAACAGCCCATTGCTACA
ACCCGTGTATACACGGTACCTGTGTGGACACGAACGTCTGCGAGTGCGAG
CCTGGTTGGGAAGGAAAAGATTGTAGTCAAGCTCATTGCTACCACCCATG
TGTACACGGCACCTGTAAAGACGTAAACGTCTGCGAATGTGATCCTGGCT
GGGGAGGAGAAGACTGTAGTCAAGACATTGACGAGTGCTGGCTCGGGACT
CACGACTGTGACCACACCTGTGATAACAACGAGGGCTCCTACACCTGCTC
CTGTGACAGCGGATTCCAACTCGTCGATTCTATACAGTGTGTTGTCTCTA
CAACAGAGAGTGTTTCACACGGAACTACCGACAGAACATCAACTGTGGAC
AAGACAACAACTGTTACATCACCAGCGCAAATTACAACTACAAAACGTCC
ACTGAAGATCACAGAAATTGCCGATCCAAGAACATCAACTTTGAACAAGA
CAACGACAAAAATTACTACAACACAACCACAGAGCCCCACTGAAACTGTC
ACAACACCAACTACGGACAGGACAACAGCGCAACAAGTACAGAGTACGGC
CAGGACCACGGCTAGCGGTTTTCACACAAGTTCCACTGTCAGAACATCAC
ATGTGGACAGGACAACAGCAGAACAACCACAAAGGACCACAGCTACTGGT
TTACATACAACATCCATAGCCACAACACCCACTAACGACAAGACACCAGC
ACCATCTTCACAGACTGCCACCGAGACCACAGCTGACATTTTAGACAGAA
CATCAACAACCGACATTACAACAGCACAACCATTACAGACGACTACTTTA
ACAGCTACAACAACAACATCGGCAGCCGACAGCATAACGGCACAACCATC
AGAGAGAACCATCAGGACCACAGCTAGCCGTTTACATACAGCTTTGATAG
ATACAACAACAGCATCAAGAGCCGACATCATAACTACCACAATGCAACCA
CCGAGGACCCCAGATACTGTCACGTTAAGAACATCGATTGAGGACAGGAC
TACAGAAAAACCACCACCGAGAACCGCCAGAACTACAGCTAGCGGTTTGC
ATACAAGGTCCATGGCCACAGCAACAGTTGTAGACAGAACAACAGCAAAT
ACTCCACAGACCACCGAGATCACTATTAGCAGTTTACATACTAGTTCCAC
AACAATAAAAACCGACACCACAACAGCAAGACAATCGCTGAGGACGACAA
GCACTGCCACGGCCAGAGGTTCAACTTTAGACAGTACAACAGCCCAGCCT
ACACAACGAACAACAGCTAACGGTTTACATACATCAACTGTGGACAAGAC
AACAGCACAAATACCACAAACGTCTACAGCTAGTGGTTTACATACAAGTT
CCACAGCCACAATAACAACCGCCGACATTACAACGGCAAGACGTCCACAG
GCACCCACAGACACTGCCACGGCGAGAACAACAACTTTGGCTAGAACAAC
ACAGCTACCACAGAGAACCACCGGGACCGCAGCTCGCCGTTTACCTACAA
CCTCCACAACCAAAACAGCAGCCGACATTACAACGGCTAGTCAACCACTG
ATCATTTCAGAAACTCCCACTTCCACTGCAGACGGGACGACAGCAAAACG
TCTACAGAAGAACACCAGGGCCACAGCTAGCAGTTTTCAGACGAGCACTG
CAGCCAGCACATCGACAGCCGACATTACAACAGCAAGACTTCCACAGAGG
ACCACAGACACTGCAGCATCGATATTGGACAGGACAGCAACACAACCACC
ACAGAGAACCACCAAGACCACAGAAAGAGGTTTCCACTCAAGTACCACGG
CCAAGACTACACCGACGGCGAACATTCTAACCATATTACGATCACTGAGG
ACCATAGAAACTACCAATGCCAGATCAACTATGGACTGGACAACATCACA
GCCGACAAGGACCAAACCGAGTAGTTTACAGACAACTTCTGCAGATATGC
CAACGACAACAGCTGATGTTACAACAGCTAGACAACAATTAAGGAACACT
GATACTACCACTGTCAGAACATCAACCGTTGACAGAACAACGACACAGCA
AACAAGGACAACTGCCATAAAATCAACTGGCGATGTTACAATAGCAATAA
ATCCACTGAGGACCACCACAGAAAGTGTCACTTCCAGCAGAACATCAACT
GCGGACAGAACAATGGCACAACCTCCACAGAGAACCACAGCTAGCGTTTT
ACACCCAAGCCCCACACACGAAGGCTCCTACACCTGTTCCTGTGACGACG
GCTTCCAACTCATCCATTCCACTGACTGCGTCACCTCTACAACCCCCACC
ATCGGCATTACAACGGTCAAGACTCCAACGATTACCACAGAGAGTGTATC
GCACAGTGCCACAGCTGCAACATCAACTGTGGATAAGTCAACAGCAAACC
CACCACAGCGAACCACCAGTACCACTGCTAGCAGTTCGCACACAAGTTCC
ACCGACCCAGCACCGACAACAACAACAACAGCAACAATAACAACAGCCCA
TTGCTACAACCCGTGTATACACGGTACCTGTGTGGACACGAACGTCTGCG
AGTGCGAGCCTGGTTGGGAAGGAAAAGATTGTAGTCAAGCTCATTGCTAC
CACCCATGTGTACACGGCACCTGTAAAGACGTAAACGTCTGCGAATGTGA
TCCTGGCTGGGGAGGAGAAGACTGTAGTCAAGACATTGACGAGTGCTGGC
TCGGGACTCACGACTGTGACCACACCTGTGATAACAACGAGGGCTCCTAC
ACCTGCTCCTGTGACAGCGGATTCCAACTCGTCGATTCTATACAGTGTGT
TGTCTCTACAACAGAGAGTGTTTCACACGGAACTACCGACAGAACATCAA
CTGTGGACAAGACAACAACTGTTACATCACCAGCGCAAATTACAACTACA
AAACGTCCACTGAAGATCACAGAAATTGCCGATCCAAGAACATCAACTTT
GAACAAGACAACGACAAAAATTACTACAACACAACCACAGAGCCCCACTG
AAACTGTCACAACACCAACTACGGACAGGACAACAGCGCAACAAGTACAG
AGTACGGCCAGGACCACGGCTAGCGGTTTTCACACAAGTTCCACTGTCAG
AACATCACATGTGGACAGGACAACAGCAGAACAACCACAAAGGACCACAG
CTACTGGTTTACATACAACATCCATAGCCACAACACCCACTAACGACAAG
ACACCAGCACCATCTTCACAGACTGCCACCGAGACCACAGCTGACATTTT
AGACAGAACATCAACAACCGACATTACAACAGCACAACCATTACAGACGA
CTACTTTAACAGCTACAACAACAACATCGGCAGCCGACAGCATAACGGCA
CAACCATCAGAGAGAACCATCAGGACCACAGCTAGCCGTTTACATACAGC
TTTGATAGATACAACAACAGCATCAAGAGCCGACATCATAACTACCACAA
TGCAACCACCGAGGACCCCAGATACTGTCACGTTAAGAACATCGATTGAG
GACAGGACTACAGAAAAACCACCACCGAGAACCGCCAGAACTACAGCTAG
CGGTTTGCATACAAGGTCCATGGCCACAGCAACAGTTGTAGACAGAACAA
CAGCAAATACTCCACAGACCACCGAGATCACTATTAGCAGTTTACATACT
AGTTCCACAACAATAAAAACCGACACCACAACAGCAAGACAATCGCTGAG
GACGACAAGCACTGCCACGGCCAGAGGTTCAACTTTAGACAGTACAACAG
CCCAGCCTACACAACGAACAACAGCTAACGGTTTACATACATCAACTGTG
GACAAGACAACAGCACAAATACCACAAACGTCTACAGCTAGTGGTTTACA
TACAAGTTCCACAGCCACAATAACAACCGCCGACATTACAACGGCAAGAC
GTCCACAGGCACCCACAGACACTGCCACGGCGAGAACAACAACTTTGGCT
AGAACAACACAGCTACCACAGAGAACCACCGGGACCGCAGCTCGCCGTTT
ACCTACAACCTCCACAACCAAAACAGCAGCCGACATTACAACGGCTAGTC
AACCACTGATCATTTCAGAAACTCCCACTTCCACTGCAGACGGGACGACA
GCAAAACGTCTACAGAAGAACACCAGGGCCACAGCTAGCAGTTTTCAGAC
GAGCACTGCAGCCAGCACATCGACAGCCGACATTACAACAGCAAGACTTC
CACAGAGGACCACAGACACTGCAGCATCGATATTGGACAGGACAGCAACA
CAACCACCACAGAGAACCACCAAGACCACAGAAAGAGGTTTCCACTCAAG
TACCACGGCCAAGACTACACCGACGGCGAACATTCTAACCATATTACGAT
CACTGAGGACCATAGAAACTACCAATGCCAGATCAACTATGGACTGGACA
ACATCACAGCCGACAAGGACCAAACCGAGTAGTTTACAGACAACTTCTGC
AGATATGCCAACGACAACAGCTGATGTTACAACAGCTAGACAACAATTAA
GGAACACTGATACTACCACTGTCAGAACATCAACCGTTGACAGAACAACG
ACACAGCAAACAAGGACAACTGCCATAAAATCAACTGGCGATGTTACAAT
AGCAATAAATCCACTGAGGACCACCACAGAAAGTGTCACTTCCAGCAGAA
CATCAACTGCGGACAGAACAATGGCACAACCTCCACAGAGAACCACAGCT
AGCGTTTTACACCCAAGCCCCACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000066 | genome | Sc0000066:1391067..1393873 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88413_cuf0 |
| Biotype | protein_coding |
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