|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88412_cuf0 >transcript:BL88412_cuf0-protein ID=transcript:BL88412_cuf0-protein|Name=transcript:BL88412_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=398bp
RTETDPTRAQDTTRTTETINSRTSTVDRTTTQPPQSTTASGVHTSFADTT
MPPAAITTAQTTTSTTASSLQASSSGTTANLTTATQTPMTTQGIGQQHCR
FVRCLSIDLTLPEDQNHVLVDFSNYIAAVDADSNQVTPEVDNVMSQNVTY
PTTKYEVSPDEEPPYLFPTVTFRACNDTCEVSVIIIDNTAPRVVSCPTTD
QNLQGGSCRNVILHDYYSSSTIASWFRDNVGIWDEQCTRTIIDSIEIGET
ATTTCYTTDMTGNRSLGCDINFHCMKHECPTLPPPEFGAIVCHEEGLVER
CVLFCKEGKIHNRQNTFTCDMAASPAWTGASVDDHIICEDRGRPREKFTF
NESCDPEDMDFHLSIKQTLSTRDGHELCKDLSIVDCEITVSCGNSTQV Run BLAST on NCBI mRNA from alignment at Sc0000066:1394070..1396767+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88412_cuf0 ID=transcript:BL88412_cuf0|Name=transcript:BL88412_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2698bp|location=Sequence derived from alignment at Sc0000066:1394070..1396767+ (Branchiostoma lanceolatum)
CAGGACAGAAACAGACCCCACACGTGCACAGGACACCACAAGGACCACAG
AAACTATCAATTCAAGAACATCAACTGTAGACAGGACAACAACACAACCT
CCACAAAGTACCACAGCTAGCGGTGTACACACAAGTTTCGCAGACACAAC
AATGCCACCAGCCGCCATTACAACAGCACAGACAACCACCAGTACCACAG
CCAGCAGTTTACAGGCAAGCTCATCTGGGACGACTGCCAACTTAACAACA
GCAACACAAACACCGATGACCACTCAAGGTATTGGTAAGTACTCATTCTA
CTGACGCATATCTGTATGCTTGGTATTTCTAAATGGGCTTACAGTTGCAG
AGTAAAATAGTTCTACCATTCCGCTGCTACATACGTCTTTGAATACACCC
TCTGCAAAATCTATCCAGTTGTTTGAGTGCCTGTTTTCTTGTGCACTGCA
TATATACAATCCTATGCCCTACACAGAATATATCTCTCTCTCTCTCTCTC
TCTCTCTCGCTCCCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTG
TGCGCGCGCGCGCGTGTGAGTGTGTGTTTGATGGCGGACAAATTCTGAAA
GATCAGTATATGCATTTAATTTCGCAGGTCAGCAGCATTGCAGATTCGTG
CGCTGTTTAAGCATCGACCTAACCTTACCCGAAGATCAAAACCATGTTCT
AGTCGACTTCAGCAACTACATCGCTGCTGTTGACGCCGATTCAAATCAAG
TCACGCCAGAAGTGGACAACGTCATGTCTCAGAATGTTACCTACCCGACT
ACAAAGTACGAAGTCAGTCCAGACGAAGAGCCACCATACCTCTTCCCAAC
TGTTACGTTTAGGGCCTGCAACGATACGTGTGAAGTTAGCGTGATTATCA
TAGGTATGTTGATATCTATGTTGCCATTGTATGTGCATTTCAAGTATTGC
AGATTGACATTGATAGGAATACATCACTATTAGAAAAATGCCCGTATATT
ATGACACTACAGATTGGACTGTACAGCCACAGCAGACGCTGCGGACAACC
CACAGACTGACCAGGATGCGACGCCATAGTCTTGCGAGACTGACGGCTGC
CAACATGACACTACAGCTTTAACTGGTATTGAGCAATAGAAATGACATAG
ATATGGTTGTAACACAAATTGTAATAATGAGTTTGTTTCGCCACCATACC
TGTCCAGACAACACCGCACCACGCGTAGTAAGCTGCCCAACAACAGATCA
GAATCTCCAGGGAGGCAGCTGTCGTAACGTCATACTCCATGACTACTACA
GCAGCAGCACGATAGCGTCCTGGTTTCGGGACAACGTCGGGATCTGGGAT
GAACAATGCACGCGAACCATAATTGATAGCATTGAAATTGGCGAAACAGC
AACTACTACCTGTTACACAACGGACATGACGGGAAATCGCTCCCTTGGTT
GTGACATCAATTTCCACTGCATGAAGCACGGTAAGATATCTCTAAACCCT
AAAAAAAGGAGTACTCTTATGTGTCAATTAACACTTTTGTCTAAAAGAGA
TTCGGAAAGTAAGCTATTGTAACAATAAAGCTGAACTTTTGAGCTTTCAT
TTCTTATCCTGCACGTAAGTGAGCAACATATAAGAAGCGATAGCTAGATC
TAATATTGACGACTTTATGTATTTGAAGGAACAAATTATCATAGTGTGTT
ATTTTTCAAATCCAACATCATGTAGAGTGCCCGACTCTCCCACCACCAGA
GTTTGGCGCGATTGTCTGCCACGAAGAGGGTCTAGTGGAGAGGTGCGTTC
TCTTCTGTAAGGAGGGCAAAATCCACAACAGGCAAAACACCTTTACGTGC
GACATGGCCGCTTCACCAGCATGGACAGGCGCGAGTGTTGATGATCACAT
AATCTGCGGTGAGTTTTATTGAATTTTTAGATCATCGTGTTTATATTTAG
CTGTTTTTCCTGCCCACACTGAGTGATAACATCACATTGGTGTAAGATCT
GGAGGCTCTGACACAGGTTTAATACATCGTGCTTAATATGCCATACTACA
AATACTTAATTCATATTGCGAGGAAACAGCAAGTTTTTTTATAAAAAAAA
ATCTATATTATGTCAACAGAAGACAGAGGTCGGCCACGGGAGAAGTTCAC
TTTCAACGAGTCATGTGACCCCGAAGACATGGATTTCCACCTGTCAATCA
AGCAAACTTTATCAACGAGGGATGGCCATGAGCTGTGTAAGGACTTGTCA
ATCGTTGATTGTGAAATCACCGTCTCTTGCGGAAATTCTACTCAAGTCTA
GAGGAATAGCTGAAAAAATTGTGTAGAAACACCAAATTTGGCACACATGT
GATTTAATGTATTCTTAGCAAATCTAGATGAAGCCAGCTCAAGTTCTACC
CAAGAGTGATTTTCTGGCCTTTTGTTTACTATTCATAACTAGATATGTGT
ATATTGGGATTCTGTGCAATGACAGTGCCAAATCTGCTGTCTTAGATAAA
TGTCCAATTCTTCTGATCTACACAACACGGTCGACCTCTGTAAAAGGTCC
GCAAGCACCTTCAAGTTGGTTGATCGTGCTATGAGCAAATTTGTCAAATC
CATTTGAAGACAACAAGATTGGACTAAAATTCTTTCCCCCATTCATTGTC
ATTACTCATAATATAAACAAACTACTTTGGGGGACAATAGAAATATAA Coding sequence (CDS) from alignment at Sc0000066:1394070..1396767+ >transcript:BL88412_cuf0 ID=transcript:BL88412_cuf0|Name=transcript:BL88412_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=5985bp|location=Sequence derived from alignment at Sc0000066:1394070..1396767+ (Branchiostoma lanceolatum)
AGGACAGAAACAGACCCCACACGTGCACAGGACACCACAAGGACCACAGA
AACTATCAATTCAAGAACATCAACTGTAGACAGGACAACAACACAACCTC
CACAAAGTACCACAGCTAGCGGTGTACACACAAGTTTCGCAGACACAACA
ATGCCACCAGCCGCCATTACAACAGCACAGACAACCACCAGTACCACAGC
CAGCAGTTTACAGGCAAGCTCATCTGGGACGACTGCCAACTTAACAACAG
CAACACAAACACCGATGACCACTCAAGGTATTGGTCAGCAGCATTGCAGA
TTCGTGCGCTGTTTAAGCATCGACCTAACCTTACCCGAAGATCAAAACCA
TGTTCTAGTCGACTTCAGCAACTACATCGCTGCTGTTGACGCCGATTCAA
ATCAAGTCACGCCAGAAGTGGACAACGTCATGTCTCAGAATGTTACCTAC
CCGACTACAAAGTACGAAGTCAGTCCAGACGAAGAGCCACCATACCTCTT
CCCAACTGTTACGTTTAGGGCCTGCAACGATACGTGTGAAGTTAGCGTGA
TTATCATAGACAACACCGCACCACGCGTAGTAAGCTGCCCAACAACAGAT
CAGAATCTCCAGGGAGGCAGCTGTCGTAACGTCATACTCCATGACTACTA
CAGCAGCAGCACGATAGCGTCCTGGTTTCGGGACAACGTCGGGATCTGGG
ATGAACAATGCACGCGAACCATAATTGATAGCATTGAAATTGGCGAAACA
GCAACTACTACCTGTTACACAACGGACATGACGGGAAATCGCTCCCTTGG
TTGTGACATCAATTTCCACTGCATGAAGCACGAGTGCCCGACTCTCCCAC
CACCAGAGTTTGGCGCGATTGTCTGCCACGAAGAGGGTCTAGTGGAGAGG
TGCGTTCTCTTCTGTAAGGAGGGCAAAATCCACAACAGGCAAAACACCTT
TACGTGCGACATGGCCGCTTCACCAGCATGGACAGGCGCGAGTGTTGATG
ATCACATAATCTGCGAAGACAGAGGTCGGCCACGGGAGAAGTTCACTTTC
AACGAGTCATGTGACCCCGAAGACATGGATTTCCACCTGTCAATCAAGCA
AACTTTATCAACGAGGGATGGCCATGAGCTGTGTAAGGACTTGTCAATCG
TTGATTGTGAAATCACCGTCTCTTGCGGAAATTCTACTCAAGTCTAGAGG
ACAGAAACAGACCCCACACGTGCACAGGACACCACAAGGACCACAGAAAC
TATCAATTCAAGAACATCAACTGTAGACAGGACAACAACACAACCTCCAC
AAAGTACCACAGCTAGCGGTGTACACACAAGTTTCGCAGACACAACAATG
CCACCAGCCGCCATTACAACAGCACAGACAACCACCAGTACCACAGCCAG
CAGTTTACAGGCAAGCTCATCTGGGACGACTGCCAACTTAACAACAGCAA
CACAAACACCGATGACCACTCAAGGTATTGGTCAGCAGCATTGCAGATTC
GTGCGCTGTTTAAGCATCGACCTAACCTTACCCGAAGATCAAAACCATGT
TCTAGTCGACTTCAGCAACTACATCGCTGCTGTTGACGCCGATTCAAATC
AAGTCACGCCAGAAGTGGACAACGTCATGTCTCAGAATGTTACCTACCCG
ACTACAAAGTACGAAGTCAGTCCAGACGAAGAGCCACCATACCTCTTCCC
AACTGTTACGTTTAGGGCCTGCAACGATACGTGTGAAGTTAGCGTGATTA
TCATAGACAACACCGCACCACGCGTAGTAAGCTGCCCAACAACAGATCAG
AATCTCCAGGGAGGCAGCTGTCGTAACGTCATACTCCATGACTACTACAG
CAGCAGCACGATAGCGTCCTGGTTTCGGGACAACGTCGGGATCTGGGATG
AACAATGCACGCGAACCATAATTGATAGCATTGAAATTGGCGAAACAGCA
ACTACTACCTGTTACACAACGGACATGACGGGAAATCGCTCCCTTGGTTG
TGACATCAATTTCCACTGCATGAAGCACGAGTGCCCGACTCTCCCACCAC
CAGAGTTTGGCGCGATTGTCTGCCACGAAGAGGGTCTAGTGGAGAGGTGC
GTTCTCTTCTGTAAGGAGGGCAAAATCCACAACAGGCAAAACACCTTTAC
GTGCGACATGGCCGCTTCACCAGCATGGACAGGCGCGAGTGTTGATGATC
ACATAATCTGCGAAGACAGAGGTCGGCCACGGGAGAAGTTCACTTTCAAC
GAGTCATGTGACCCCGAAGACATGGATTTCCACCTGTCAATCAAGCAAAC
TTTATCAACGAGGGATGGCCATGAGCTGTGTAAGGACTTGTCAATCGTTG
ATTGTGAAATCACCGTCTCTTGCGGAAATTCTACTCAAGTCTAGAGGACA
GAAACAGACCCCACACGTGCACAGGACACCACAAGGACCACAGAAACTAT
CAATTCAAGAACATCAACTGTAGACAGGACAACAACACAACCTCCACAAA
GTACCACAGCTAGCGGTGTACACACAAGTTTCGCAGACACAACAATGCCA
CCAGCCGCCATTACAACAGCACAGACAACCACCAGTACCACAGCCAGCAG
TTTACAGGCAAGCTCATCTGGGACGACTGCCAACTTAACAACAGCAACAC
AAACACCGATGACCACTCAAGGTATTGGTCAGCAGCATTGCAGATTCGTG
CGCTGTTTAAGCATCGACCTAACCTTACCCGAAGATCAAAACCATGTTCT
AGTCGACTTCAGCAACTACATCGCTGCTGTTGACGCCGATTCAAATCAAG
TCACGCCAGAAGTGGACAACGTCATGTCTCAGAATGTTACCTACCCGACT
ACAAAGTACGAAGTCAGTCCAGACGAAGAGCCACCATACCTCTTCCCAAC
TGTTACGTTTAGGGCCTGCAACGATACGTGTGAAGTTAGCGTGATTATCA
TAGACAACACCGCACCACGCGTAGTAAGCTGCCCAACAACAGATCAGAAT
CTCCAGGGAGGCAGCTGTCGTAACGTCATACTCCATGACTACTACAGCAG
CAGCACGATAGCGTCCTGGTTTCGGGACAACGTCGGGATCTGGGATGAAC
AATGCACGCGAACCATAATTGATAGCATTGAAATTGGCGAAACAGCAACT
ACTACCTGTTACACAACGGACATGACGGGAAATCGCTCCCTTGGTTGTGA
CATCAATTTCCACTGCATGAAGCACGAGTGCCCGACTCTCCCACCACCAG
AGTTTGGCGCGATTGTCTGCCACGAAGAGGGTCTAGTGGAGAGGTGCGTT
CTCTTCTGTAAGGAGGGCAAAATCCACAACAGGCAAAACACCTTTACGTG
CGACATGGCCGCTTCACCAGCATGGACAGGCGCGAGTGTTGATGATCACA
TAATCTGCGAAGACAGAGGTCGGCCACGGGAGAAGTTCACTTTCAACGAG
TCATGTGACCCCGAAGACATGGATTTCCACCTGTCAATCAAGCAAACTTT
ATCAACGAGGGATGGCCATGAGCTGTGTAAGGACTTGTCAATCGTTGATT
GTGAAATCACCGTCTCTTGCGGAAATTCTACTCAAGTCTAGAGGACAGAA
ACAGACCCCACACGTGCACAGGACACCACAAGGACCACAGAAACTATCAA
TTCAAGAACATCAACTGTAGACAGGACAACAACACAACCTCCACAAAGTA
CCACAGCTAGCGGTGTACACACAAGTTTCGCAGACACAACAATGCCACCA
GCCGCCATTACAACAGCACAGACAACCACCAGTACCACAGCCAGCAGTTT
ACAGGCAAGCTCATCTGGGACGACTGCCAACTTAACAACAGCAACACAAA
CACCGATGACCACTCAAGGTATTGGTCAGCAGCATTGCAGATTCGTGCGC
TGTTTAAGCATCGACCTAACCTTACCCGAAGATCAAAACCATGTTCTAGT
CGACTTCAGCAACTACATCGCTGCTGTTGACGCCGATTCAAATCAAGTCA
CGCCAGAAGTGGACAACGTCATGTCTCAGAATGTTACCTACCCGACTACA
AAGTACGAAGTCAGTCCAGACGAAGAGCCACCATACCTCTTCCCAACTGT
TACGTTTAGGGCCTGCAACGATACGTGTGAAGTTAGCGTGATTATCATAG
ACAACACCGCACCACGCGTAGTAAGCTGCCCAACAACAGATCAGAATCTC
CAGGGAGGCAGCTGTCGTAACGTCATACTCCATGACTACTACAGCAGCAG
CACGATAGCGTCCTGGTTTCGGGACAACGTCGGGATCTGGGATGAACAAT
GCACGCGAACCATAATTGATAGCATTGAAATTGGCGAAACAGCAACTACT
ACCTGTTACACAACGGACATGACGGGAAATCGCTCCCTTGGTTGTGACAT
CAATTTCCACTGCATGAAGCACGAGTGCCCGACTCTCCCACCACCAGAGT
TTGGCGCGATTGTCTGCCACGAAGAGGGTCTAGTGGAGAGGTGCGTTCTC
TTCTGTAAGGAGGGCAAAATCCACAACAGGCAAAACACCTTTACGTGCGA
CATGGCCGCTTCACCAGCATGGACAGGCGCGAGTGTTGATGATCACATAA
TCTGCGAAGACAGAGGTCGGCCACGGGAGAAGTTCACTTTCAACGAGTCA
TGTGACCCCGAAGACATGGATTTCCACCTGTCAATCAAGCAAACTTTATC
AACGAGGGATGGCCATGAGCTGTGTAAGGACTTGTCAATCGTTGATTGTG
AAATCACCGTCTCTTGCGGAAATTCTACTCAAGTCTAGAGGACAGAAACA
GACCCCACACGTGCACAGGACACCACAAGGACCACAGAAACTATCAATTC
AAGAACATCAACTGTAGACAGGACAACAACACAACCTCCACAAAGTACCA
CAGCTAGCGGTGTACACACAAGTTTCGCAGACACAACAATGCCACCAGCC
GCCATTACAACAGCACAGACAACCACCAGTACCACAGCCAGCAGTTTACA
GGCAAGCTCATCTGGGACGACTGCCAACTTAACAACAGCAACACAAACAC
CGATGACCACTCAAGGTATTGGTCAGCAGCATTGCAGATTCGTGCGCTGT
TTAAGCATCGACCTAACCTTACCCGAAGATCAAAACCATGTTCTAGTCGA
CTTCAGCAACTACATCGCTGCTGTTGACGCCGATTCAAATCAAGTCACGC
CAGAAGTGGACAACGTCATGTCTCAGAATGTTACCTACCCGACTACAAAG
TACGAAGTCAGTCCAGACGAAGAGCCACCATACCTCTTCCCAACTGTTAC
GTTTAGGGCCTGCAACGATACGTGTGAAGTTAGCGTGATTATCATAGACA
ACACCGCACCACGCGTAGTAAGCTGCCCAACAACAGATCAGAATCTCCAG
GGAGGCAGCTGTCGTAACGTCATACTCCATGACTACTACAGCAGCAGCAC
GATAGCGTCCTGGTTTCGGGACAACGTCGGGATCTGGGATGAACAATGCA
CGCGAACCATAATTGATAGCATTGAAATTGGCGAAACAGCAACTACTACC
TGTTACACAACGGACATGACGGGAAATCGCTCCCTTGGTTGTGACATCAA
TTTCCACTGCATGAAGCACGAGTGCCCGACTCTCCCACCACCAGAGTTTG
GCGCGATTGTCTGCCACGAAGAGGGTCTAGTGGAGAGGTGCGTTCTCTTC
TGTAAGGAGGGCAAAATCCACAACAGGCAAAACACCTTTACGTGCGACAT
GGCCGCTTCACCAGCATGGACAGGCGCGAGTGTTGATGATCACATAATCT
GCGAAGACAGAGGTCGGCCACGGGAGAAGTTCACTTTCAACGAGTCATGT
GACCCCGAAGACATGGATTTCCACCTGTCAATCAAGCAAACTTTATCAAC
GAGGGATGGCCATGAGCTGTGTAAGGACTTGTCAATCGTTGATTGTGAAA
TCACCGTCTCTTGCGGAAATTCTACTCAAGTCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000066 | genome | Sc0000066:1394070..1396767 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88412_cuf0 |
| Biotype | protein_coding |
|
