transcript:BL88371_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL88371_cuf0
Unique Nametranscript:BL88371_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL88371_cuf0

>transcript:BL88371_cuf0-protein ID=transcript:BL88371_cuf0-protein|Name=transcript:BL88371_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=146bp
SIRQKYRKIPVRIRQDLWHFRTVYGSVFVENTLLSDSSGNIPYPSAHLVG
SVRLDPPVSVSIRQKYRKFPVRIRQDRWHFRAVYDSVFVEYTLLSDSSGN
IPYTGAEIVGYLTRIRLYPSVSVSIRQKYRKIPVRIRRETRPFRAV
Run BLAST on NCBI

mRNA from alignment at Sc0000059:1667279..1667716+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL88371_cuf0 ID=transcript:BL88371_cuf0|Name=transcript:BL88371_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=438bp|location=Sequence derived from alignment at Sc0000059:1667279..1667716+ (Branchiostoma lanceolatum)
AGTATCCGCCAAAAATACAGAAAAATCCCTGTACGCATCCGTCAGGATCT
GTGGCATTTCCGTACAGTGTACGGCTCCGTATTCGTCGAAAATACCTTAC
TTTCGGATTCTTCCGGAAATATTCCATATCCCAGTGCGCATTTAGTCGGA
TCCGTCAGGTTGGATCCGCCTGTATCCGTCAGTATCCGCCAAAAATACAG
AAAATTTCCTGTTCGTATCCGTCAGGATCGGTGGCATTTCCGTGCAGTGT
ACGACTCCGTATTCGTCGAATATACCTTACTTTCGGATTCTTCCGGAAAT
ATTCCATATACCGGTGCGGAAATTGTCGGATATCTTACACGAATCCGCCT
GTATCCGTCAGTATCCGTCAGTATCCGACAAAAATACAGAAAAATACCGG
TACGTATACGCCGGGAAACGAGGCCATTTCGTGCAGTG

Coding sequence (CDS) from alignment at Sc0000059:1667279..1667716+

>transcript:BL88371_cuf0 ID=transcript:BL88371_cuf0|Name=transcript:BL88371_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=438bp|location=Sequence derived from alignment at Sc0000059:1667279..1667716+ (Branchiostoma lanceolatum)
AGTATCCGCCAAAAATACAGAAAAATCCCTGTACGCATCCGTCAGGATCT
GTGGCATTTCCGTACAGTGTACGGCTCCGTATTCGTCGAAAATACCTTAC
TTTCGGATTCTTCCGGAAATATTCCATATCCCAGTGCGCATTTAGTCGGA
TCCGTCAGGTTGGATCCGCCTGTATCCGTCAGTATCCGCCAAAAATACAG
AAAATTTCCTGTTCGTATCCGTCAGGATCGGTGGCATTTCCGTGCAGTGT
ACGACTCCGTATTCGTCGAATATACCTTACTTTCGGATTCTTCCGGAAAT
ATTCCATATACCGGTGCGGAAATTGTCGGATATCTTACACGAATCCGCCT
GTATCCGTCAGTATCCGTCAGTATCCGACAAAAATACAGAAAAATACCGG
TACGTATACGCCGGGAAACGAGGCCATTTCGTGCAGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL88371gene:BL88371Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL88371_cuf0-E1BL88371_cuf0-E1-1564476830-244075Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL88371_cuf0transcript:BL88371_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000059genomeSc0000059:1667279..1667716 +
Properties
Property NameValue
Transcript idBL88371_cuf0
Biotypeprotein_coding