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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88312_cuf0 >transcript:BL88312_cuf0-protein ID=transcript:BL88312_cuf0-protein|Name=transcript:BL88312_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=139bp
MEQYYRHCQICDNWCREYRSKISKKVLPHPTRSCLLWIGGKTRTSRVQYG
SVNVARMPHRAFPNPENRTRLHAHRIAYMAFTGRIEIDGLHVSHLCSVPL
CVRIEHLSLEPPHINNSRKQCQSRGYCIRHEQFPPCIFN Run BLAST on NCBI mRNA from alignment at Sc0000016:2844301..2852268- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88312_cuf0 ID=transcript:BL88312_cuf0|Name=transcript:BL88312_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=7968bp|location=Sequence derived from alignment at Sc0000016:2844301..2852268- (Branchiostoma lanceolatum)
GGACAAATTAAGAAGTAATCTACCACATGAAGGTGAGTTTGTGTCACCGG
AATGTCTGAAAGGTGAGATATGATGCCCTTTTTTGGCCTATTTTCTCATA
GACTGGTGTGCTTAAGCATTTCCCTTTAGTCTCCCCTATAGGAAAATCTG
GCCGCCCACCTCCCACTGTGTTCGGGCTAATTCGGTGTATTTTCGCCCCT
GTCTAATTGACTTTTGACCCAAGAAGACATCTGGAACACGTGAAGATATA
TTTCAACTGTCATTTATTCAGAAATTCGGTACATTTTTGGCCTTTTCAGG
CATTTCTGTCATGGAACAGTATTACAGACATTGTCAAATTTGTGACAATT
GGTGCCGAGAGTACAGGTCCAAAATCTCTAAAAAAGTACTCCCCCACCCC
ACCAGATCTTGTTTACTGTGGATTGGGGGAAAGACTAGAACATCTAGAGT
CCAATATGGCTCGGTGAACGTTGCGAGGATGCCACATCGGGCCTTCCCGA
ATCCTGAGAATCGTACGAGATTACATGCTCATAGAATTGCATACATGGCT
TTTACTGGTCGCATAGAAATCGATGGACTACATGTCTCGCATTTGTGTAG
TGTCCCATTGTGCGTTCGGATCGAGCACTTGTCACTAGAACCCCCCCACA
TCAACAACAGTCGTAAACAATGCCAGTCCCGTGGGTATTGCATCCGCCAT
GAGCAGTTTCCTCCTTGTATCTTCAACTAGCTAGGTAAGTCTCAACACAA
GTCCATATCTTCGTCTGAATCGTCTTCAGAGTCACTGTAGTAATCTTCAG
GTTCCTTGTCCCCAGCCCGGCTGTACCCGTGGTCGGTGCCGTCTTGTTGT
GCTCGCTTCCTTGGCGACTCACGCTGTCCCTTGGAGGGCTTGGCCACCTC
TGCACTCTTGTACGTGCCTCTCTCTCGACCCTCATCGTACACTACAAATT
TTCCCATTATGTTGGCATTTTCCCGTTTCTTGTTTGCCGGTTCCTTCTTG
TAGGATCTCTTGTAATCTTGCCTCTCCCTCATCTTTTCCAGAACACGGAC
AGCTTTGGACTTTGGAGAGAGTGGGATACCTGCAGCGAGCCTCTTCATCG
CGACGGAGAGGCCAGTGCCATTGTTGGAGGAGTGAAGGGCTGAGGCGATC
CTACCGGCAAGAGTGCGGAAGCGGGTAATATTCTTCGGTGCACTTTTACT
TATCTGTCTGTTAACAGATTCGGCCTTGTTCGTATTCGCAAAATGCCGAG
TCAACTCTAGTGCCTTCTTGCCGAGTCTCATCTCCATGGCGACACGTAAG
AGTTTACAGTCAGATGGGTTGGGGTTGATTTGTCCTCTTGCCTCAGCATT
TATCTTCTGAAACCTCCATCGTGATGGGTGTCTGCATACGAGGGAGTATT
CCAAACACCAGTCATGGTTTCCAGCGTAGCAGTGGGGTATTGCCCGCATG
GCCTTGTCCATCGCTCTTTCCACTCCGTGTCTCGTCCGCATTCCAAGCTG
TGTCAGGGCCGCTTCATGCTCAGCATTCAGGCGTTGAACAAGGTCGTTAG
CAAATCTGTGCTTCACCCGGCTTCTGCTCTCTGCTTTTGCCCCTGGAAAC
ATGGTGGGAGACCATTTAGTGCTGCTGATTTTAGTTCGCACATTTCGGCT
GATGTGTACCAAGCACCTCTCCTGTTTTACTCTGATTGGGCGGACGGCTT
CCTCCCGCATTACCGTGGCCATCCCTCTGAAAGTTTGACTGTCTCCATCT
GTGATGAGACCCGAGACTCTGACGTTGCTCTCAAGCAAGTCTCTTGCCAT
CTTTTCCCCAGACTCCTCTTCGTTTCCAATCGGGGCCTGCGGCAAAGTGT
TAGCTGAGCACTTGTGGGGAGGAGGCTCAAGTCCGTGGCCTCGGTAGAAT
GTGCACAGCCTACAGGTCTTGATTTTCAGATGATTAGCAATGACTTTGTT
CCTTGTTGTCACCTCTTCCACGAATGTGGCGTTGCTGCTATCACTTGGCT
GTCCCGGCTTCCTTCCCCCGAGGTTCCCAAGTGGAGTATGATATCTTGTG
TCCGCTTGCCCCCGAATTGGACTGTCTGGTTTGTACCCCTTCAGCGCATT
CACCCTTTTCATCACCTGAATCCAGCGTTTCATGTCCTTTTCGTTTTCTT
CTTCCATTATATCACTGTACTTATTTGCCAGGTTCTGAAGTGCAGGCTCA
GACGGTACGGGTAAGTCCATGGTAGCCATCATCTGTCTGAATCCAGAGAC
AGCCATCGGACAGTCAGCCAGGGCTACTTGCGCAGCCATGTTGATGACGG
GGGTTCTCCCTCCTGGTCCATCTCGTATTATCTCGTCATAGAACTTCTGG
GAGGATGAGCCATATCCGCATCGATCGCACACCAGCTTTTCAGCTGTTGC
CAGTCCCATCGTCTTCTCCTCCCTGGCCGAGGCCCTGACAAGCTCTGGGC
AGGTGGGTCGTCGCTTATCGTGGTCCCGCTGCGCCTTGGCACATGCTCGG
ACAGCGGCTGTCGCCTGCCAGATTCTGTACCCGACAACATCATCTGCACC
CTCTGCACTCCCGTCCCCAAGATACTGGTTCATTTCACTGGAGTCTGACT
TCTGTGGACGCAGCAGGATGGGTCTTCTAGACTCCCTGATGATGTCCATT
TTGTCATGGAGGACGTTGCCGTCCCTGTCTCTGTCCGCCAGCAAAGAGTA
GTCTTCCTCTGAAGGTCTGACGTATGTAGGAAGTCTTACACGTGCCTTCT
TAGTGCCCCCTTTGTTCCATGGATAGTTTCCAGGCTTGAACTGCCCATCG
TGCTGCATCTTCCTCTTTCCCATGATGTCTTCTGATGGATGGATGTTCTT
CGGCTGAATTGTCTTCAAGAAAGTGTGGCTTACAACTCATTTCCTCATCT
CTTATATAGCACTTGACCCAGGGAAATGTGTGACAGGTAGCTCTCAAGGG
ACATGCCCGACCCTGCCACCCTTGATGACGTGTGTGGCTAGCTTTAGTTT
CCACTGACTCAAGGCCAGCCAAATAAGGAAATAATAAGTGATGATGCAAG
TGTGGGAGTGCATTTCCTGATGTTTTCCTTGTTTATTTGGGTGATATCAC
CATTAAGCAGGTACCATGGCATCATACTTGGAAGCCTTGTCACAGCATAT
TTTCAGAAAGTAGCATGTAGAGTCTGTAAAATCTTCCAGACTTGAGTTTG
ACCTACTTTTAAAGACTGTACAGAACAAACCTTTTAAAAGTGCCCCAATG
AACCAGAGAATCTTTTGATGAGTATATTCAGGTCCCTGTCACAGTGAAGC
ATGCCATTCTGTGTTAGAATGGACAATATCTGACATTTCTTTGCTTAGTT
TTTCCAAATCTCCTGGCTGAACATATTGGCTGCTGTAAGCTAGGCCCTAT
TCAAGACTGCTGTACACAGGCCTTAAGAGCTGCCATGACACCTGTTATAC
AAGTGGGTCCCAGGGGTTCATTAACCAACAGACATCTTTCATATTGTGGA
TAGTGCTTCACAACCCTTCCCTGCATTTGATGATACTATTGAAATTTGCA
AATTCTCAAGTTGAATTTTCTAATAGGGGAGACTAAAGGGAATGGGACAT
GCGCGTAGCATGCACGATGAGAGACCTCAAGATTCTTTTCTTATTAGAAC
TTTGAAAACCTTTCTTGAGGGGCAATTTGGTGAAATTGTGGCATTTTGCT
GGCTGATGGCATAGTATAGGGTTTTAAGAAAATGTTTTGGCAAAAAAAAC
AGAATTTTGTCCATATATGGTGTCGTTATTGGATACATGATGCCAGAGAC
TCCCAGCTGGCTGTTCGCCTGTTGTAGGCCTGGCTCAGGGGTCAAAGTTC
AGGTTTGTTTACAAAATGGCCTGTAGCTAGAAAATAGCCGTATCAAATTC
CTTGTGACGACAAGTACGGACAAATTAAGAAGTAATCTACCACATGAAGG
TGAGTTTGTGTCACCGGAATGTCTGAAAGGTGAGATATGATGCCCTTTTT
TGGCCTATTTTCTCATAGACTGGTGTGCTTAAGCATTTCCCTTTAGTCTC
CCCTATAGGAAAATCTGGCCGCCCACCTCCCACTGTGTTCGGGCTAATTC
GGTGTATTTTCGCCCCTGTCTAATTGACTTTTGACCCAAGAAGACATCTG
GAACACGTGAAGATATATTTCAACTGTCATTTATTCAGAAATTCGGTACA
TTTTTGGCCTTTTCAGGCATTTCTGTCATGGAACAGTATTACAGACATTG
TCAAATTTGTGACAATTGGTGCCGAGAGTACAGGTCCAAAATCTCTAAAA
AAGTACTCCCCCACCCCACCAGATCTTGTTTACTGTGGATTGGGGGAAAG
ACTAGAACATCTAGAGTCCAATATGGCTCGGTGAACGTTGCGAGGATGCC
ACATCGGGCCTTCCCGAATCCTGAGAATCGTACGAGATTACATGCTCATA
GAATTGCATACATGGCTTTTACTGGTCGCATAGAAATCGATGGACTACAT
GTCTCGCATTTGTGTAGTGTCCCATTGTGCGTTCGGATCGAGCACTTGTC
ACTAGAACCCCCCCACATCAACAACAGTCGTAAACAATGCCAGTCCCGTG
GGTATTGCATCCGCCATGAGCAGTTTCCTCCTTGTATCTTCAACTAGCTA
GGTAAGTCTCAACACAAGTCCATATCTTCGTCTGAATCGTCTTCAGAGTC
ACTGTAGTAATCTTCAGGTTCCTTGTCCCCAGCCCGGCTGTACCCGTGGT
CGGTGCCGTCTTGTTGTGCTCGCTTCCTTGGCGACTCACGCTGTCCCTTG
GAGGGCTTGGCCACCTCTGCACTCTTGTACGTGCCTCTCTCTCGACCCTC
ATCGTACACTACAAATTTTCCCATTATGTTGGCATTTTCCCGTTTCTTGT
TTGCCGGTTCCTTCTTGTAGGATCTCTTGTAATCTTGCCTCTCCCTCATC
TTTTCCAGAACACGGACAGCTTTGGACTTTGGAGAGAGTGGGATACCTGC
AGCGAGCCTCTTCATCGCGACGGAGAGGCCAGTGCCATTGTTGGAGGAGT
GAAGGGCTGAGGCGATCCTACCGGCAAGAGTGCGGAAGCGGGTAATATTC
TTCGGTGCACTTTTACTTATCTGTCTGTTAACAGATTCGGCCTTGTTCGT
ATTCGCAAAATGCCGAGTCAACTCTAGTGCCTTCTTGCCGAGTCTCATCT
CCATGGCGACACGTAAGAGTTTACAGTCAGATGGGTTGGGGTTGATTTGT
CCTCTTGCCTCAGCATTTATCTTCTGAAACCTCCATCGTGATGGGTGTCT
GCATACGAGGGAGTATTCCAAACACCAGTCATGGTTTCCAGCGTAGCAGT
GGGGTATTGCCCGCATGGCCTTGTCCATCGCTCTTTCCACTCCGTGTCTC
GTCCGCATTCCAAGCTGTGTCAGGGCCGCTTCATGCTCAGCATTCAGGCG
TTGAACAAGGTCGTTAGCAAATCTGTGCTTCACCCGGCTTCTGCTCTCTG
CTTTTGCCCCTGGAAACATGGTGGGAGACCATTTAGTGCTGCTGATTTTA
GTTCGCACATTTCGGCTGATGTGTACCAAGCACCTCTCCTGTTTTACTCT
GATTGGGCGGACGGCTTCCTCCCGCATTACCGTGGCCATCCCTCTGAAAG
TTTGACTGTCTCCATCTGTGATGAGACCCGAGACTCTGACGTTGCTCTCA
AGCAAGTCTCTTGCCATCTTTTCCCCAGACTCCTCTTCGTTTCCAATCGG
GGCCTGCGGCAAAGTGTTAGCTGAGCACTTGTGGGGAGGAGGCTCAAGTC
CGTGGCCTCGGTAGAATGTGCACAGCCTACAGGTCTTGATTTTCAGATGA
TTAGCAATGACTTTGTTCCTTGTTGTCACCTCTTCCACGAATGTGGCGTT
GCTGCTATCACTTGGCTGTCCCGGCTTCCTTCCCCCGAGGTTCCCAAGTG
GAGTATGATATCTTGTGTCCGCTTGCCCCCGAATTGGACTGTCTGGTTTG
TACCCCTTCAGCGCATTCACCCTTTTCATCACCTGAATCCAGCGTTTCAT
GTCCTTTTCGTTTTCTTCTTCCATTATATCACTGTACTTATTTGCCAGGT
TCTGAAGTGCAGGCTCAGACGGTACGGGTAAGTCCATGGTAGCCATCATC
TGTCTGAATCCAGAGACAGCCATCGGACAGTCAGCCAGGGCTACTTGCGC
AGCCATGTTGATGACGGGGGTTCTCCCTCCTGGTCCATCTCGTATTATCT
CGTCATAGAACTTCTGGGAGGATGAGCCATATCCGCATCGATCGCACACC
AGCTTTTCAGCTGTTGCCAGTCCCATCGTCTTCTCCTCCCTGGCCGAGGC
CCTGACAAGCTCTGGGCAGGTGGGTCGTCGCTTATCGTGGTCCCGCTGCG
CCTTGGCACATGCTCGGACAGCGGCTGTCGCCTGCCAGATTCTGTACCCG
ACAACATCATCTGCACCCTCTGCACTCCCGTCCCCAAGATACTGGTTCAT
TTCACTGGAGTCTGACTTCTGTGGACGCAGCAGGATGGGTCTTCTAGACT
CCCTGATGATGTCCATTTTGTCATGGAGGACGTTGCCGTCCCTGTCTCTG
TCCGCCAGCAAAGAGTAGTCTTCCTCTGAAGGTCTGACGTATGTAGGAAG
TCTTACACGTGCCTTCTTAGTGCCCCCTTTGTTCCATGGATAGTTTCCAG
GCTTGAACTGCCCATCGTGCTGCATCTTCCTCTTTCCCATGATGTCTTCT
GATGGATGGATGTTCTTCGGCTGAATTGTCTTCAAGAAAGTGTGGCCTAC
AACTCATTTCCTCATCTCTTATATAGCACCTGACCCAGGGAAATGTGTGA
CAGGTAGCTCTCAAGGGACATGCCCGGCCCTGCCACCCTTGATGACGTGT
GTGGCTAGCTTTAGTTTCCACTGACTCAAGGCCAGCCAAATAAGGAAATA
ATAAGTGATGATGCAAGTGTGGGAGTGCATTTCCTGATGTTTTCCTTGTT
TATTTGGGTGATATCACCATTAAGCAGGTACCATGGCATCATACTTGGAA
GCCTTGTCACAGCATATTTTCAGAAAGTAGCATGTAGAGTCTGTAAAATC
TTCCAGACTTGAGTTTGACCTACTTTTAAAGACTGTACAGAACAAACCTT
TTAAAAGTGCCCCAATGCACCAGAGAATCTTTTGATGAGTATATTCAGGT
CCCTGTCACAGTAAAGCATGCCATTCTGTGTTAGAATGGACAATATCTGA
CATTTCTTTGCTTAGTTTTTCCAAATCTCCTGGCTGAACATATTGGCTGC
TGTAAGCTAGGCCCTATTCAAGACTGCTGTACACAGGCCTTAAGAGCTGC
CATGACACCTGTTATACAAGTGGGTCCCAGGGGTTCATTAACCAACAGAC
ATCTTTCATATTGTGGATAGTGCTTCACAACCCTTCCCTGCATTTGATGA
TACTATTGAAATTTGCAAATTCTCAAGTTGAATTTTCTAATAGGGGAGAC
TAAAGGGATAGGGACATGCGCGTAGCATGCACGATGAGAGACCTCAAGAT
TCTTTTCTTATTAGAACTTTGAAAACCTTTTTTGAGGGGCAATTTGGTGA
AATTGTGGCATTTTGCTGGCTGATGGCATAGTATAGGGTTTTAAGAAAAT
GTTTTGGCAAAAAAAACAGAATTTTGTCCATATATGGTGTCGTTATTGGA
TACATGATGCCAGAGACTCCCAGCTGGCTGTTCGCCTGTTGTAGGCCTGG
CTCAGGGGTCAAAGTTCAGGTTTGTTTACAAAATGGCCTGTAGCTAGAAA
ATAGCCGTATCAAATTCCTTGTGACGACAAGTACGGACAAATTAAGAAGT
AATCTACCACATGAAGGTGAGTTTGTGTCACCGGAATGTCTGAAAGGTGA
GATATGATGCCCTTTTTTGGCCTATTTTCTCATAGACTGGTGTGCTTAAG
CATTTCCCTTTAGTCTCC Coding sequence (CDS) from alignment at Sc0000016:2844301..2852268- >transcript:BL88312_cuf0 ID=transcript:BL88312_cuf0|Name=transcript:BL88312_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=420bp|location=Sequence derived from alignment at Sc0000016:2844301..2852268- (Branchiostoma lanceolatum)
ATGGAACAGTATTACAGACATTGTCAAATTTGTGACAATTGGTGCCGAGA
GTACAGGTCCAAAATCTCTAAAAAAGTACTCCCCCACCCCACCAGATCTT
GTTTACTGTGGATTGGGGGAAAGACTAGAACATCTAGAGTCCAATATGGC
TCGGTGAACGTTGCGAGGATGCCACATCGGGCCTTCCCGAATCCTGAGAA
TCGTACGAGATTACATGCTCATAGAATTGCATACATGGCTTTTACTGGTC
GCATAGAAATCGATGGACTACATGTCTCGCATTTGTGTAGTGTCCCATTG
TGCGTTCGGATCGAGCACTTGTCACTAGAACCCCCCCACATCAACAACAG
TCGTAAACAATGCCAGTCCCGTGGGTATTGCATCCGCCATGAGCAGTTTC
CTCCTTGTATCTTCAACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000016 | genome | Sc0000016:2844301..2852268 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88312_cuf0 |
| Biotype | protein_coding |
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