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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88230_cuf1 >transcript:BL88230_cuf1-protein ID=transcript:BL88230_cuf1-protein|Name=transcript:BL88230_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=337bp
WAGRLGKQSVPPSMTTEGDSGLPEDVSSVAAMSIAAAGEVEEGPLKRLRA
RLQKHKDSPTAQREIKAYRSWEEGAKILTNSGYTDLGGVKALVLGFMQRD
MVTPSFTSKVLYGQSLLNLSKAQLKQLVTSQLQVDPTDSTCLLLTALQLP
EGDSRVQTLQQVVAAILQHGPGDWLYQHLHHIYCYLGEAIWMASPQPKPT
MMSKLFKRSDLPTTNLSYLAKALSTMASSLMYKQDHLETMCYTALLSMKV
FETEAIRQWEHFLSLAPECDVNVPYTHYRLATLYNQQQDRQKMIHHFTTG
YHRETNRLPGFPEVPRFIKDPAREAYEHYVSLLSYMS Run BLAST on NCBI mRNA from alignment at Sc0000024:1907855..1914955- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88230_cuf1 ID=transcript:BL88230_cuf1|Name=transcript:BL88230_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=7101bp|location=Sequence derived from alignment at Sc0000024:1907855..1914955- (Branchiostoma lanceolatum)
GTGGGCAGGGAGGCTGGGGAAACAGGTATGCTGACACTGAGCTTTACTTG
CGTACTTTCTTAACATATTTACTAACATTTTTGGGCTAGCCAATCAGATG
GACTACAGTACTAGTAAGTAACTTTGCTAGGGGTATCCAAATGAGGGTAG
AGACATAAAAGCAGATGGGAAAAGGAAAAGAGTACAGAGTCTGTAGTTCC
TGGGGATGTTGGAGACAAGAAGTAGTAACAGGCATAAGGCTGTCACTGTC
AGTGTGGGTTGGGGAAAAATCAGGGGAAATGGTAGGCACCGACATATTTG
ACTCCCCACCCTCTAGTTAAAGCTCTCCCTCTCCATCAAGTGTCTGGATG
CATGGCATGGGTGTGGCATTGAAATTATTTTACTATTTTCAGTCAGTACC
ACCCAGCATGACTACAGAAGGAGACTCGGGCCTGCCTGAAGACGTGTCGT
CTGTAGCGGCCATGTCCATTGCTGCAGCTGGAGAGGTGGAAGAGGGGCCG
CTCAAGCGGCTCAGAGCCAGGCTACAGAAACACAAGGACTCTCCAACAGC
ACAACGTGAGATCAAGGCCTACAGGTCCTGGGAGGAAGGAGCCAAAATCC
TGACAAACAGTGGGTACACAGATCTGGGGGGAGTGAAGGCCTTGGTACTG
GGCTTCATGCAGCGTGACATGGTAACACCAAGTTTCACAAGTAAAGTACT
GTATGGACAGTCATTGTTGAACCTGAGTAAAGCCCAACTGAAACAGCTAG
TGACCTCCCAACTGCAAGTTGACCCCACTGACAGCACCTGTCTGCTGCTG
ACAGCTCTACAGCTGCCAGAAGGAGACAGCCGGGTGCAGACCCTGCAGCA
GGTGGTTGCTGCCATCCTACAGCACGGACCGGGAGACTGGCTATACCAAC
ACCTACACCACATCTACTGCTATCTGGGTGAGGCCATATGGATGGCAAGC
CCTCAGCCAAAGCCAACAATGATGTCAAAACTTTTCAAGCGGAGTGACCT
CCCAACAACAAACCTATCTTATCTAGCCAAAGCCCTGTCCACCATGGCTA
GTTCCCTTATGTACAAACAGGACCATTTGGAGACAATGTGCTACACAGCC
CTGCTGTCTATGAAAGTGTTTGAGACAGAAGCCATCAGACAGTGGGAGCA
CTTCCTCAGCCTGGCACCAGAGTGTGATGTCAATGTACCGTATACTCACT
ACCGCCTGGCCACCCTGTACAACCAGCAGCAGGACAGGCAGAAGGTGATC
CACCACTTCACCAGGGGGCAGCAGTGCGAGACCAACAGGCTACCTGGGTT
TAGTGAGGTCTACAGATCCATCAAAGATCCTGCTAGAAAGGCACATGAAC
ATTACGTATTTTAATTGATCTTCTCTACCCAAATCAGATGCGTATAAGTC
CTATAGGCCTTAAAACCTCCCGTCGGACTTCCATTTTAACATTTCATAAA
CTTATCATGCAAATGACTTGCACATTATACATAACCACATTGCATTGTAT
ATTGTACGTGTCAAAGTCCTGTAGGCCAAACCTTTTTCCTACTTCCATTT
TGACATTTTGTAAAATGTATTAGACAAATGAGTGGTACATTTACATAATC
TATGCATGTTGATGTTCACCTTTAGCCAACTTACAAATAACACGGCCGAT
TTCATTTTCCAGCAAGGAGAAAACTGTCGCTTAGGACAGTGCTGGCATGA
TCAACTGTCACTGTATATACTCAAGGAATGAATACTTAGTAAACGATTTC
ACATGGCTTGAAATTTCTAATGAGTATGTATTCAATGTTCAAAGATCGGT
ACTGTGTTCAATTGTGTTCAACTGTCAGTATTTGTGCGTCTTCACCATAA
CAGGTGCCTCCAATATATCATAACACTGTGCAATGTATAGTACATACATG
TAGCACTTAGACATGGCCAGGCAGGTGGGCAGAAGACAGAACAAAAATGT
TCGGGGTGGTTTTAAGTTCACAGTCAGGAGGTCATCACAAAAATCTCTGC
ATTTGCAATATTACAAATCTTAGATAAAATAAGAATAAATAAAAGTTTGA
AGATCTCATACATCCATGAAATATTTAGAATTTCTAGAATGTCTTCTTTA
ATTGTAGTTCATTAATCATGCAAATAAGGTTTTGATAAACATTGATCACT
TTATGTCACAGTGAAGGGGACAATATAGAAAATATATAACTGCAAAATTT
ACAGACATACAGACCAAACACAATACCTCCCCATGAATAAGCAGCCTCTT
TCATTGATTATAGACCTTTCATTGCTTATACACCTGCCTAATTACAAGCA
CCTGAACTTTCTGAAGGGTTTCAAGTTAAACATTAACAACCATGTCCCGC
ATGTGGGGCAAAGTGCGATCAACAACTTTGCAGGTTAAGGTACAAACTCG
GCCACTGTAGTTCTTGCAGCGCAGCTGAAGGTTTTGCTTCAAACATAAAG
TAGTCTTGCGAGGTATCTGGTGAACCTTTTCCACAAAATGGCTGACGGGA
CACCAAGGCAACCAGGAACAGGTGATCAGGGTCACCTGACGCCACCTGAC
GCTGAGATGGAGGCACAAGGAGACCTGCAGCCTGGACAGGTGGGGAGGGG
GGCAGTTTTGTCCCACTTATGAGGGAGAAAGCGTTAAAATAATGCACATG
ATCAAGTACACGACAAGTGCAACATTACCCAGGACAAGTAGAGAGACATT
TCATGTACTTATGTCATGTGTATTAAGGACAATACATATATATTCCTCCA
TGCAAAAAAGAAACCGTCAATAAAATAACAAGATAAGCAATTTCATCTAT
GATGTATCATGTAGCTGTGCAGTAGACATACAACAAGTCTTCTATCAATG
TTGTACAGCCTAGAACCTAAGTGCAGACTGTACTACATTAATGTAACTAG
TTCACCTTACATCATAGTAAAATCTATACCTAAATTGTTGTGAAATAAAC
TTTGGCTACAGCCTGTGCAGCATGGGGACCATCACCATGGACAGACAGGA
CAACCAGTACCCCAGGTTCTGGAACAAGGGCTCCAAGTCCCTCAGCAGCC
TGCTCCCACACATGGACAGGCAGGCCAACCAGCACCTGACTTTCATGGAC
AAGGCTATCAGGTCCCACTGCAGATACCACAGTTTCCTCAGCAGGCTGCT
CCCATGATGTACCATCCCGGTCAGCAGGGCTACGGCGCTCCAACAGGGAT
ACCCCCATACCAGGGCTTTCCTGTGGCTCCCCAACAGTACAACATCCCAC
CTGCAGGCCCTGCAGCTGCAAACGTTGGTCAGCCGCCAGCTCTGCAGATG
TCTGTAGGCCAGGTAGGAGGTGTTTTTGGTGGAGCGACCATCCGGATCCA
GAGCCCGGCCCTAGCAGCGGGAGGACTCGTGGGAGGACTTGTGGCCGGAG
CATCTGCTGCAGCTGCATTCGCAGCCAGCAAGGTTTGTCAGGTTTATTTC
GCATGACCTGTGAACTGCCTTTAGACATAACACACAAATTTTGTACCTCA
CACCTGCCCAAGATGACCACCCAGGGGACAGGTGAAAAATAGTCGTTTTG
AACTTTGTGCAGTCCCAATTCAAGCCAGTCGCGGCCGTGTTGGACAGGTG
GTTGTCATGAGCAGGCCTCTTAAGGCTTGCGTCTATGGGAAAAATTTTCG
GGACCAAGAAAAAGTGATGGTCATGGACAGGAGGTCAGCTTGACAAGGTG
GTCACTTGGGCAGGTATGACTGTAAGTACAAGCTGTATCAGACCAGACTG
TGAGTGAGTCCCTTGCAAAAGTGGTTTGTAGTGCTGGACAGGCCTGGCAT
TAATAACCCTAACCCAGCATTTTGGGCATTGATGCCATCCCAGTCCAGAT
CCCTGGGCAATTTGGCATCAATGCTGCCTTAATGTGATGACCATCAATCA
TCATTTAGTGTGATCTCCTTCCCCTGACAAGAGCCAGTCACACCAAATTA
ACCCCCTGCCCTCAGTCTCCAGTCTTAGAGTGATGATTTCTTGCTCAATC
TAAAGGTGGACCAGAAGTAATAACCGTGACAGGAAATGGCATCAATGCAG
CACAGTCCACAGCAATTGGAGATGTCTTCTAACAATGACCAGTGGATACA
GGGGTTTATCCAAGGAGGTTTCTTGTGTCCTATCTAAAGATAGAGTATGA
CCACTAGATAATTGCCGTGGCAGAAAACAGCATCAATGTGGCACTGCTCC
AACTAATTGGTTCAAGGCTTTGCTGGGTTAACAGTACTAGTTTAGGGAGG
GAAACTTGGACAGCCAACTGAAGCTAGGCACTCATTTGCACCTGAGTGAA
GTAAGGAAAGCCATGTTAAGTACCTTTCCCAAGTACACAACATTAGGGCC
TGCATGGGATTTGAACCCACCACCTTTAGACTCAGCAATCCTAACCACAA
GACCACCTTGCCCCTATCCAGGTTTCAGAGTCTGCTGCAGGAGTGGTGGG
AGCAGGTCTGGCTGCAGGTGTGGCTACGGGAGTTACAACATTGGCAGCTT
TCTACATGAGCAACAAGCAACAAACTGAGGAGGCCATCCGCAGGGCAGTG
GAGAGAGAGCGACATATCCAAGTGGAGAACATAGAGGGAGGGTCCCTTCT
AGTGCAAGTCAAGTTTCTAACACTGGTAAGACACAGCAAATATGAAACTT
TTATGTTTGAAGAAAAAAGGAAAATCGTCATTAAAGGAAGGCTAAACTTA
AAATTGAAAAGTCTACAATATTTTTCTAAATATCCCTCAAAGTCAAGTTC
TCACTTGTTTTACCTAAGTCCGGTGTAGGTCAGGGCTCTGCCACCATTTG
TAACTCGCACCGTATTGACGGCTACTCACCTGAAGGTTGAATTGATCAAC
TGCCACAATAGATGACGTCAGGTTCAAGTATATCCCAACCAGAAGGAATA
GGGCTTTTTGATCAGGCTTTCCGGAGGATGGATTTCTATTCATTTTGCTA
GGGTCAGTTGGTTATCTGGAGATACTGCTATTACTATTGGTTTCCCTTCT
CTCTTCCCCCAGGCTGGCTACTGGGTGATGCGCTCCTTAAACGAGAGGAT
CCACCGGGGGAGCGACCGCACCTGTCTGCAGCTGCTGCTGGAGGATGAGC
TGCAGAGGATCGGCTGGACCGGACCCATCCAAGTGGGGATGGAGGGGTGG
TGGTTTGCTGAGGAGGAGGGACAAGAAGAGGAGGAGGCAGGGATGGAGCA
GGAGGAGGAGAGATGGGAGTGGGCAGGGAGGCTGGGGAAACAGGTATGCT
CAGAGGCTTTAACTGCGTCTTTTTTCAAATTTGCTTAAAGCATTTTGACA
GCAAAATACAAAATTTTCTTACAAACTTCAATAATTGGGGGTGGGAATGG
CATATGACTCCTCAAACTCTACTTAAAGCTGTATGACAGCATTTCCTCAC
ACTGTGGTACCAGGATGGGGTTTTTCCACACTTCTCTGTCTCTCCATCAC
TCCTTCATGTCTTGGGGCACATGGGATTGCATGATGTGCCATTGAAAATA
TTTTACAATTTCCAGTCGGTACTGCCAGAACCCAGCGTGACCACAGAAGG
AGACTCAGGCCTGCCTGAAGACGTGTCGTCTGTAGCAGCCATGTCCATCG
CTACAGCTGGAGAGGTGGAAGAGAGGCCACTCAAGCGGCTCAGAGCCCCG
CTACAGAAACACAGGGACTCACCAACAGCACAACGTTACATCAAGGCCTA
CAGGTCCTGGGAGGAAGGAGCAGAAATCATGATCAGCAGTGGGTACACAG
ATCTGGGGGGAGTGAAGGCCTTGGTACTGGGCTTCATGCAGCGTGACATA
CTATCACCAAGTTCCACGAGTACAGTACTGTATGACCAGTCATGGTTGAA
CCTGAGTAAAGCCCAACTGAAACAGCTAGTGACCTCCCAACTGCAAGCCG
ACCCCACGGACAGCACCTGTCTGCTGCTGACAGCCCTACAGCTGCCATAT
GGAGACAGCCGGGTGCAGACCCTGCAGCAGGTGGTTGCTGCCATCCTACA
GCATGGACGGGGAGACTGGCTGTACCAACACCTGCACCACATCTACTGCG
AACTGGGGTTGACCATATGGAAGGCAAGCCCTCAGCCAAAGCAAACAATG
ATGTCAAAACTTTTCAAGCGGAGTGACCTACCAACAAGTAACCTACCTGC
TCTAGCCAAAGCCCTGTCCACCATAGCTAGTTCCCTTATGTACAAACAGG
GCCATTTGAACACTGTGTACTTTACCGCCTTGCTGTCTAAGGAAGTGTCT
GAGACAGAAGCCATCAGACAGTGGGAGCACTTCCTCAGGCTGGCACCAGA
GTGTGATAAGTATGTGCCACATGCTCACTACCAGCTGGCCACCCTGTACA
ACCAGCAGCAGGACAGTATGAAGATGATTCACCACTTCACCACAGGGTAT
CACAGGGAGACCAACAGGCTACCTGGGTTTCCTGAAGTCCCCAGATTCAT
CAAAGATCCTGCTAGAGAGGCATATGAACATTATGTATCTTTATTAAGTT
ACATGTCTTAATTGATAGTCTTCTCTTCCTAAATTGCATATTGTATGAGT
GAAAGTCCTGTAGACCTAACCTTTGTCAGACTTCCATTTTAACATTTCAT
TAAGCAAATGACTTTCACATATACATGATCTATGTAAGTTGATGTTCACC
TTTAACCAAATTACAAATGTCACAGCTGAAAAGACTTATCCATAGGGTGG
CTATACCTTGCTTCAAAATATAAATATAGACACAGATATGTATCCAATAT
GATAGACAAATACACAACTTAATACTAATCAAGTAATTCCCATCATTTAC
CACTAAGGAATTATGGCATTTTTGCATCAACGATGCAGACTTTTATTTGT
ATGATTGGTCTCTGTTAATGTTCCACCTAACACAAAGTGCTTATGTTTGA
TGTATTGCAGTCCTATCATGGAAACACTGGAATCATAGAATTTCCTACTT
TTTATGCAAGTCCTAGTTTGCATAAGTTGCATGTAATTGTTCTCTGTCAA
AGCTAGCTGCGTACCCCAAATCATGGAAATACATCCTTTTGATTGCACAC
AACAAAATTGTTTGTTGCTTCGGTCACTTTCGAGACACACTGTGTTCTTC
A Coding sequence (CDS) from alignment at Sc0000024:1907855..1914955- >transcript:BL88230_cuf1 ID=transcript:BL88230_cuf1|Name=transcript:BL88230_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3042bp|location=Sequence derived from alignment at Sc0000024:1907855..1914955- (Branchiostoma lanceolatum)
TGGGCAGGGAGGCTGGGGAAACAGTCAGTACCACCCAGCATGACTACAGA
AGGAGACTCGGGCCTGCCTGAAGACGTGTCGTCTGTAGCGGCCATGTCCA
TTGCTGCAGCTGGAGAGGTGGAAGAGGGGCCGCTCAAGCGGCTCAGAGCC
AGGCTACAGAAACACAAGGACTCTCCAACAGCACAACGTGAGATCAAGGC
CTACAGGTCCTGGGAGGAAGGAGCCAAAATCCTGACAAACAGTGGGTACA
CAGATCTGGGGGGAGTGAAGGCCTTGGTACTGGGCTTCATGCAGCGTGAC
ATGGTAACACCAAGTTTCACAAGTAAAGTACTGTATGGACAGTCATTGTT
GAACCTGAGTAAAGCCCAACTGAAACAGCTAGTGACCTCCCAACTGCAAG
TTGACCCCACTGACAGCACCTGTCTGCTGCTGACAGCTCTACAGCTGCCA
GAAGGAGACAGCCGGGTGCAGACCCTGCAGCAGGTGGTTGCTGCCATCCT
ACAGCACGGACCGGGAGACTGGCTATACCAACACCTACACCACATCTACT
GCTATCTGGGTGAGGCCATATGGATGGCAAGCCCTCAGCCAAAGCCAACA
ATGATGTCAAAACTTTTCAAGCGGAGTGACCTCCCAACAACAAACCTATC
TTATCTAGCCAAAGCCCTGTCCACCATGGCTAGTTCCCTTATGTACAAAC
AGGACCATTTGGAGACAATGTGCTACACAGCCCTGCTGTCTATGAAAGTG
TTTGAGACAGAAGCCATCAGACAGTGGGAGCACTTCCTCAGCCTGGCACC
AGAGTGTGATGTCAATGTACCGTATACTCACTACCGCCTGGCCACCCTGT
ACAACCAGCAGCAGGACAGGCAGAAGATGATTCACCACTTCACCACAGGG
TATCACAGGGAGACCAACAGGCTACCTGGGTTTCCTGAAGTCCCCAGATT
CATCAAAGATCCTGCTAGAGAGGCATATGAACATTATGTATCTTTATTAA
GTTACATGTCTTAATGGGCAGGGAGGCTGGGGAAACAGTCAGTACCACCC
AGCATGACTACAGAAGGAGACTCGGGCCTGCCTGAAGACGTGTCGTCTGT
AGCGGCCATGTCCATTGCTGCAGCTGGAGAGGTGGAAGAGGGGCCGCTCA
AGCGGCTCAGAGCCAGGCTACAGAAACACAAGGACTCTCCAACAGCACAA
CGTGAGATCAAGGCCTACAGGTCCTGGGAGGAAGGAGCCAAAATCCTGAC
AAACAGTGGGTACACAGATCTGGGGGGAGTGAAGGCCTTGGTACTGGGCT
TCATGCAGCGTGACATGGTAACACCAAGTTTCACAAGTAAAGTACTGTAT
GGACAGTCATTGTTGAACCTGAGTAAAGCCCAACTGAAACAGCTAGTGAC
CTCCCAACTGCAAGTTGACCCCACTGACAGCACCTGTCTGCTGCTGACAG
CTCTACAGCTGCCAGAAGGAGACAGCCGGGTGCAGACCCTGCAGCAGGTG
GTTGCTGCCATCCTACAGCACGGACCGGGAGACTGGCTATACCAACACCT
ACACCACATCTACTGCTATCTGGGTGAGGCCATATGGATGGCAAGCCCTC
AGCCAAAGCCAACAATGATGTCAAAACTTTTCAAGCGGAGTGACCTCCCA
ACAACAAACCTATCTTATCTAGCCAAAGCCCTGTCCACCATGGCTAGTTC
CCTTATGTACAAACAGGACCATTTGGAGACAATGTGCTACACAGCCCTGC
TGTCTATGAAAGTGTTTGAGACAGAAGCCATCAGACAGTGGGAGCACTTC
CTCAGCCTGGCACCAGAGTGTGATGTCAATGTACCGTATACTCACTACCG
CCTGGCCACCCTGTACAACCAGCAGCAGGACAGGCAGAAGATGATTCACC
ACTTCACCACAGGGTATCACAGGGAGACCAACAGGCTACCTGGGTTTCCT
GAAGTCCCCAGATTCATCAAAGATCCTGCTAGAGAGGCATATGAACATTA
TGTATCTTTATTAAGTTACATGTCTTAATGGGCAGGGAGGCTGGGGAAAC
AGTCAGTACCACCCAGCATGACTACAGAAGGAGACTCGGGCCTGCCTGAA
GACGTGTCGTCTGTAGCGGCCATGTCCATTGCTGCAGCTGGAGAGGTGGA
AGAGGGGCCGCTCAAGCGGCTCAGAGCCAGGCTACAGAAACACAAGGACT
CTCCAACAGCACAACGTGAGATCAAGGCCTACAGGTCCTGGGAGGAAGGA
GCCAAAATCCTGACAAACAGTGGGTACACAGATCTGGGGGGAGTGAAGGC
CTTGGTACTGGGCTTCATGCAGCGTGACATGGTAACACCAAGTTTCACAA
GTAAAGTACTGTATGGACAGTCATTGTTGAACCTGAGTAAAGCCCAACTG
AAACAGCTAGTGACCTCCCAACTGCAAGTTGACCCCACTGACAGCACCTG
TCTGCTGCTGACAGCTCTACAGCTGCCAGAAGGAGACAGCCGGGTGCAGA
CCCTGCAGCAGGTGGTTGCTGCCATCCTACAGCACGGACCGGGAGACTGG
CTATACCAACACCTACACCACATCTACTGCTATCTGGGTGAGGCCATATG
GATGGCAAGCCCTCAGCCAAAGCCAACAATGATGTCAAAACTTTTCAAGC
GGAGTGACCTCCCAACAACAAACCTATCTTATCTAGCCAAAGCCCTGTCC
ACCATGGCTAGTTCCCTTATGTACAAACAGGACCATTTGGAGACAATGTG
CTACACAGCCCTGCTGTCTATGAAAGTGTTTGAGACAGAAGCCATCAGAC
AGTGGGAGCACTTCCTCAGCCTGGCACCAGAGTGTGATGTCAATGTACCG
TATACTCACTACCGCCTGGCCACCCTGTACAACCAGCAGCAGGACAGGCA
GAAGATGATTCACCACTTCACCACAGGGTATCACAGGGAGACCAACAGGC
TACCTGGGTTTCCTGAAGTCCCCAGATTCATCAAAGATCCTGCTAGAGAG
GCATATGAACATTATGTATCTTTATTAAGTTACATGTCTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000024 | genome | Sc0000024:1907855..1914955 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88230_cuf1 |
| Biotype | protein_coding |
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