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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88222_cuf0 >transcript:BL88222_cuf0-protein ID=transcript:BL88222_cuf0-protein|Name=transcript:BL88222_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=1170bp
MSEGGNVVDPPAEEDPPAEEDPPGKEDPPVEGAVVQATVQIGGDIGSLPA
FAVGGDSSSTAIRWKKWKRSFGLYLQGKGVVADGQKKALLLHTAGEAVQD
IYFSKVDENDDKKKYDEAVKVLDNYFIPKSNVAFERHLFRQMKQQSGESV
DDLVCRLRQKAATCDFGNQVDVHIRDQVIEAGLDPKLKRKFLEKGGDLQL
TTMLDIARAHESVGRQLLEMTGQVNVLSVGQRKKDFSRTTQRGPHSDRSQ
TFQKSGRGPRSLGAGAAWKPKTGRSCYSCGRQGHMSRDAVCPARGKKCSQ
CGMLNHFRAACRNKRSNTNHVDQSANEEMRSDYVFSVQNTRVRRDGTVTL
EVGGATLTDVLIDSGATSNILSKTTWENLKRSKVKCWAQRKGSRKLYAYG
SSSPLPTLGEFTAEIKCPISGAKTDGAFVVLDGEGRGLLSKGTAEELKIL
KVGATVAKEVNSLQEKLNPSEKEKYKDVFTGIGLLKNYELALNIDESVKP
VAQPLRRVPYGLREKVDRKLDELLECGIIEETPEGPTGWVSPLVVVPKPD
GDVRVCVDMRRANECIIRERQPIPTVEEVLHDLNGSTVFSKLDLKWGFHQ
ILLREEDRHVTTFSTHKGLFRYRRLMFGITSAPEKYQQIVRDVLKSCKGV
ANIADDVIVHGRDTSEHDERLYAVLDRLKEVGLTANPEKCQFRMSKLTFF
GHELTAKGVDPSEEKIAAIREAEAPKTVGEVRSFLGLVHYVAKFVPDLAT
MAEPLQKLTRKGVEFKWSSEQQKSFEKLKELITSTETLAYFRPTGKTRIV
ADASPVGLGAVLLQLQDERWRVIAYASRQLSEVERRYSQTEKEALALVWA
CERFHLYTFGREFELETDHRPLEHIYATKSKPSFRVERWVLRLQAYPYKV
VYRPGKTNIADALSRLNSKSNDKSSENYDYVRSVVEASTPVSLTPREIER
ASGEDPELRQVRRCIQTGQWDECQVISYRHVKTELSTYGQLILRGTRIVI
PKVLRKTVVQLAHEGHQGIQKTKNRLRTKVWWPKMEADAEAVCKRCHGCQ
VVSEQTPQEPXEEPTEDQGLVAQNGSRCRGSVQTLSRVPGSQRADTARTN
GTSNAANRRMASLWSRSVGTATNRGDYLSRRGLLQSLLRDCHHEVNVKPK
GHRSIGGDLRKIWKSMLSTY Run BLAST on NCBI mRNA from alignment at Sc0000454:156372..161103- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88222_cuf0 ID=transcript:BL88222_cuf0|Name=transcript:BL88222_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4732bp|location=Sequence derived from alignment at Sc0000454:156372..161103- (Branchiostoma lanceolatum)
ACCAGATGTAACTTAGTGCAGAAGCTAGAATACACGACTAGTGAGTAGAC
GTGCTTGTGTCTGTGTGATTCTTGAGTAACGTGCGACGCTACATTGGCGA
CGAGGATAAAGCATGTCGGAGGGAGGGAATGTCGTGGATCCTCCGGCAGA
AGAAGATCCTCCGGCCGAGGAAGATCCTCCGGGAAAGGAAGATCCTCCGG
TAGAAGGCGCAGTAGTCCAGGCTACAGTCCAGATTGGAGGGGACATTGGT
AGCCTACCAGCGTTCGCAGTAGGAGGTGACTCAAGTTCAACAGCGATCCG
CTGGAAGAAATGGAAGCGGAGTTTCGGGCTCTACCTACAAGGAAAAGGGG
TAGTAGCAGACGGACAGAAGAAGGCACTACTTCTTCACACCGCAGGAGAG
GCGGTACAGGACATCTACTTTTCGAAAGTGGATGAGAATGACGACAAGAA
GAAGTACGACGAAGCAGTAAAGGTACTGGACAATTATTTCATTCCCAAAT
CGAACGTAGCTTTCGAACGCCATCTGTTCAGACAGATGAAACAACAGAGT
GGGGAATCAGTAGACGATTTAGTGTGTCGATTGAGGCAGAAAGCCGCTAC
ATGTGACTTCGGGAATCAAGTAGATGTGCACATAAGAGATCAAGTCATTG
AAGCAGGACTAGACCCCAAGCTCAAACGTAAGTTCCTAGAGAAGGGAGGT
GACTTGCAGCTAACAACAATGTTAGACATTGCACGGGCACATGAGTCTGT
AGGAAGACAACTTCTTGAAATGACTGGGCAAGTAAATGTACTGTCAGTTG
GACAGAGGAAGAAAGACTTTAGCAGAACAACCCAGAGAGGGCCCCATAGC
GACAGAAGCCAGACATTCCAGAAGTCTGGAAGGGGACCCAGGAGTCTTGG
AGCGGGGGCGGCCTGGAAACCTAAGACAGGTAGAAGCTGTTACAGTTGTG
GGCGCCAAGGACATATGTCCAGGGATGCAGTCTGTCCTGCCCGAGGGAAG
AAGTGTAGCCAATGTGGTATGCTGAACCACTTTAGGGCAGCATGCAGGAA
CAAGAGGTCTAACACAAACCATGTGGATCAGTCAGCAAATGAGGAAATGA
GATCTGACTATGTATTCAGCGTACAGAATACAAGAGTCAGAAGGGACGGT
ACAGTAACGCTAGAAGTAGGGGGAGCAACCCTAACAGATGTGCTGATTGA
CTCAGGAGCTACAAGCAATATCTTGAGTAAAACTACATGGGAGAACCTGA
AGCGGAGTAAAGTGAAGTGCTGGGCTCAACGCAAAGGAAGCCGGAAGCTC
TACGCATACGGAAGTTCCTCACCACTGCCAACATTAGGCGAGTTCACAGC
GGAGATTAAGTGCCCAATCAGTGGAGCCAAGACTGATGGCGCTTTCGTGG
TGTTGGATGGAGAAGGACGTGGCCTGCTGTCTAAAGGCACGGCAGAAGAG
CTCAAAATACTCAAAGTGGGAGCAACTGTAGCCAAAGAAGTGAACAGTCT
GCAAGAAAAGCTAAACCCATCGGAAAAAGAGAAATACAAAGATGTATTCA
CGGGGATAGGGCTTTTGAAAAACTATGAACTGGCGCTGAATATTGACGAA
TCTGTCAAACCAGTGGCGCAGCCACTGAGAAGGGTACCATATGGTCTACG
GGAAAAAGTCGACAGGAAACTCGATGAACTGCTAGAATGTGGTATAATCG
AGGAAACACCGGAAGGACCGACCGGGTGGGTGTCGCCACTTGTCGTAGTC
CCTAAGCCGGATGGTGACGTTCGCGTCTGCGTTGATATGAGAAGAGCGAA
CGAGTGTATTATCAGAGAACGTCAACCGATACCTACCGTGGAAGAAGTCT
TACACGACCTCAATGGAAGCACCGTGTTCAGTAAGCTCGACCTGAAATGG
GGTTTCCACCAGATCCTGCTACGAGAAGAGGATCGTCACGTGACCACATT
CTCGACACACAAAGGATTGTTCCGGTATCGACGTCTGATGTTTGGTATTA
CGTCAGCGCCGGAGAAATACCAGCAAATCGTCAGAGATGTGCTGAAGAGT
TGCAAAGGTGTCGCGAACATTGCGGATGACGTGATCGTACATGGCCGAGA
TACGAGCGAACACGACGAGAGACTGTATGCAGTACTCGATCGTCTGAAGG
AAGTTGGGCTCACGGCCAACCCAGAGAAATGCCAGTTCCGCATGTCCAAA
CTGACGTTTTTCGGACATGAACTGACCGCGAAGGGTGTCGACCCGAGCGA
GGAGAAGATAGCAGCCATCAGAGAAGCAGAAGCTCCAAAGACAGTTGGAG
AAGTGAGGTCATTCCTAGGCTTGGTACACTACGTGGCAAAGTTTGTACCT
GACCTCGCAACCATGGCTGAGCCGTTACAGAAGTTAACGCGCAAGGGAGT
CGAGTTCAAGTGGAGCTCAGAGCAGCAGAAGAGTTTCGAGAAGCTGAAAG
AGCTGATAACAAGTACGGAGACGTTGGCGTACTTCAGACCCACGGGGAAG
ACACGCATCGTGGCGGACGCGTCGCCCGTAGGGTTGGGGGCTGTGTTGCT
ACAGCTACAAGACGAGAGGTGGCGAGTGATTGCGTATGCATCTCGACAAC
TGTCAGAAGTCGAGCGACGGTACAGCCAAACAGAGAAGGAGGCGTTAGCA
CTCGTGTGGGCGTGCGAACGGTTTCATCTGTATACGTTTGGCCGGGAGTT
CGAGTTGGAGACGGATCACCGTCCACTGGAACACATATACGCAACTAAGT
CGAAGCCATCATTTCGCGTGGAAAGGTGGGTGCTGAGACTACAGGCTTAC
CCATATAAAGTCGTTTATCGTCCCGGGAAGACCAACATCGCTGACGCGCT
GTCGAGGCTCAACAGCAAGTCAAATGACAAGTCAAGTGAGAACTATGACT
ATGTTAGAAGCGTGGTGGAGGCGAGCACGCCAGTCAGTCTAACGCCACGC
GAGATAGAACGGGCATCGGGAGAAGACCCTGAGCTGAGACAGGTCAGGAG
GTGTATCCAAACAGGACAGTGGGACGAATGTCAAGTGATATCCTATCGTC
ATGTGAAGACAGAACTGAGCACATATGGGCAGCTCATACTACGCGGGACG
AGAATCGTCATTCCGAAGGTTTTGAGGAAGACCGTCGTGCAGTTAGCGCA
CGAAGGGCACCAGGGCATCCAGAAAACGAAGAACCGACTGAGGACCAAGG
TTTGGTGGCCCAAAATGGAAGCAGATGCAGAGGCAGTGTGCAAACGCTGT
CACGGGTGCCAGGTAGTCAGCGAGCAGACACCGCAAGAACCANACGAAGA
ACCGACTGAGGACCAAGGTTTGGTGGCCCAAAATGGAAGCAGATGCAGAG
GCAGTGTGCAAACGCTGTCACGGGTGCCAGGTAGTCAGCGAGCAGACACC
GCCAGAACCAATGGCACGAGTAATGCCGCCAACAGGCGCATGGCAAGCCT
GTGGAGCAGATCTGTTGGGACCGCTACCAACAGGGGAGACTATCTTAGTC
GTCGTGGATTACTACAGTCGCTTTTACGAGATTGCCATCATGAAGTCAAC
GTCAAGCCGAAAGGTCATCGAAGCATTGGAGGTGATCTTCGCAAGATTTG
GAAATCCATGCTCTCTACGTACTGACAACGGCCCACAGTTTGTAAGCGCA
GAGTTCGCAGAGTTTCTACGAGAGCAGGGGATACAGCATCAACGAACAAC
GCCGCTGTGGCCACAAGCCAACGGCGAAGTCGAGAGACAGAACCGTACAC
TTATGAAGGCGATCAAAGTGTCGAGAGTGGAAGGGAAAGACTGGAGGCGA
GAGATTCTTAAACATCTCCAAGCCTACAGGTCCACTCCGCAAGCAACTAC
GGGAGAAACTCCATACAAGCTGATGTTTGGGAGAGAGATGAGATCTAAAC
TGCCAGAATTGCCAAGAGAACCAAAGCTGGTAAACGAAGAAGTGCGAGAC
CGAGACTTTGAGAGGAAAACCGCAGGGAAGGACTACGCTGATGCGAAGAG
ACAAGCGAAGGAAAGTACTCTACAGCCGGGCGATCGTGTGTTGGTGAAGC
AGGAGAAGAGAGACAAATTCTCCACACAATACGAAGCAACTCCATATGAA
GTGATCGAACGAGACAGAGGGGAAGTCACAGTTCGAGATCCGGACGGGAA
AGTGAAAAAGAGGAACGTTTCCTTTATGAAGAAATACGTAGCGGAAGAGG
CAGCGACAACGACAACGGGTGAAGAAACAACCTGCGACGAGACTACGCGT
GAGGAAACGTCAACAACACCAGACAAGGAAGCAGAGACTGAAATAAAGAC
AGGCAGTTACGTCACGCGATCAGGCCGAGTGGTAAAACCACCCGAGAGAC
TGACTTATTGATAAGGAGTGGAAGGAAATAAACTCCATGATCCAGGACAA
TGAATACGGACAATGAATACGGAAATGGACTGTCTAGTATAAAGTTAAAG
TTTGAAGCATAGTTGATAATGCATGGAATTAACAAGTAGCAGCAATTGAG
TAATGCATGAGTTTGATAGTCTATATACATTGTATAATGCATGTCTGAGG
AAAGGAGGGATGTAGTGATGTGAAACATGTAATACTTTATATTGGCCACT
CTAACTCTAATCCTAGTAACTCTACACCGGATGCAGTATGAACCCTCCTA
CCAGATGTAACTTAGTGCAGAAGCTAGAATACACGACTAGTGAGTAGACG
TGCTTGTGTCTGTGTGATTCTTGAGTAACGTG Coding sequence (CDS) from alignment at Sc0000454:156372..161103- >transcript:BL88222_cuf0 ID=transcript:BL88222_cuf0|Name=transcript:BL88222_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3513bp|location=Sequence derived from alignment at Sc0000454:156372..161103- (Branchiostoma lanceolatum)
ATGTCGGAGGGAGGGAATGTCGTGGATCCTCCGGCAGAAGAAGATCCTCC
GGCCGAGGAAGATCCTCCGGGAAAGGAAGATCCTCCGGTAGAAGGCGCAG
TAGTCCAGGCTACAGTCCAGATTGGAGGGGACATTGGTAGCCTACCAGCG
TTCGCAGTAGGAGGTGACTCAAGTTCAACAGCGATCCGCTGGAAGAAATG
GAAGCGGAGTTTCGGGCTCTACCTACAAGGAAAAGGGGTAGTAGCAGACG
GACAGAAGAAGGCACTACTTCTTCACACCGCAGGAGAGGCGGTACAGGAC
ATCTACTTTTCGAAAGTGGATGAGAATGACGACAAGAAGAAGTACGACGA
AGCAGTAAAGGTACTGGACAATTATTTCATTCCCAAATCGAACGTAGCTT
TCGAACGCCATCTGTTCAGACAGATGAAACAACAGAGTGGGGAATCAGTA
GACGATTTAGTGTGTCGATTGAGGCAGAAAGCCGCTACATGTGACTTCGG
GAATCAAGTAGATGTGCACATAAGAGATCAAGTCATTGAAGCAGGACTAG
ACCCCAAGCTCAAACGTAAGTTCCTAGAGAAGGGAGGTGACTTGCAGCTA
ACAACAATGTTAGACATTGCACGGGCACATGAGTCTGTAGGAAGACAACT
TCTTGAAATGACTGGGCAAGTAAATGTACTGTCAGTTGGACAGAGGAAGA
AAGACTTTAGCAGAACAACCCAGAGAGGGCCCCATAGCGACAGAAGCCAG
ACATTCCAGAAGTCTGGAAGGGGACCCAGGAGTCTTGGAGCGGGGGCGGC
CTGGAAACCTAAGACAGGTAGAAGCTGTTACAGTTGTGGGCGCCAAGGAC
ATATGTCCAGGGATGCAGTCTGTCCTGCCCGAGGGAAGAAGTGTAGCCAA
TGTGGTATGCTGAACCACTTTAGGGCAGCATGCAGGAACAAGAGGTCTAA
CACAAACCATGTGGATCAGTCAGCAAATGAGGAAATGAGATCTGACTATG
TATTCAGCGTACAGAATACAAGAGTCAGAAGGGACGGTACAGTAACGCTA
GAAGTAGGGGGAGCAACCCTAACAGATGTGCTGATTGACTCAGGAGCTAC
AAGCAATATCTTGAGTAAAACTACATGGGAGAACCTGAAGCGGAGTAAAG
TGAAGTGCTGGGCTCAACGCAAAGGAAGCCGGAAGCTCTACGCATACGGA
AGTTCCTCACCACTGCCAACATTAGGCGAGTTCACAGCGGAGATTAAGTG
CCCAATCAGTGGAGCCAAGACTGATGGCGCTTTCGTGGTGTTGGATGGAG
AAGGACGTGGCCTGCTGTCTAAAGGCACGGCAGAAGAGCTCAAAATACTC
AAAGTGGGAGCAACTGTAGCCAAAGAAGTGAACAGTCTGCAAGAAAAGCT
AAACCCATCGGAAAAAGAGAAATACAAAGATGTATTCACGGGGATAGGGC
TTTTGAAAAACTATGAACTGGCGCTGAATATTGACGAATCTGTCAAACCA
GTGGCGCAGCCACTGAGAAGGGTACCATATGGTCTACGGGAAAAAGTCGA
CAGGAAACTCGATGAACTGCTAGAATGTGGTATAATCGAGGAAACACCGG
AAGGACCGACCGGGTGGGTGTCGCCACTTGTCGTAGTCCCTAAGCCGGAT
GGTGACGTTCGCGTCTGCGTTGATATGAGAAGAGCGAACGAGTGTATTAT
CAGAGAACGTCAACCGATACCTACCGTGGAAGAAGTCTTACACGACCTCA
ATGGAAGCACCGTGTTCAGTAAGCTCGACCTGAAATGGGGTTTCCACCAG
ATCCTGCTACGAGAAGAGGATCGTCACGTGACCACATTCTCGACACACAA
AGGATTGTTCCGGTATCGACGTCTGATGTTTGGTATTACGTCAGCGCCGG
AGAAATACCAGCAAATCGTCAGAGATGTGCTGAAGAGTTGCAAAGGTGTC
GCGAACATTGCGGATGACGTGATCGTACATGGCCGAGATACGAGCGAACA
CGACGAGAGACTGTATGCAGTACTCGATCGTCTGAAGGAAGTTGGGCTCA
CGGCCAACCCAGAGAAATGCCAGTTCCGCATGTCCAAACTGACGTTTTTC
GGACATGAACTGACCGCGAAGGGTGTCGACCCGAGCGAGGAGAAGATAGC
AGCCATCAGAGAAGCAGAAGCTCCAAAGACAGTTGGAGAAGTGAGGTCAT
TCCTAGGCTTGGTACACTACGTGGCAAAGTTTGTACCTGACCTCGCAACC
ATGGCTGAGCCGTTACAGAAGTTAACGCGCAAGGGAGTCGAGTTCAAGTG
GAGCTCAGAGCAGCAGAAGAGTTTCGAGAAGCTGAAAGAGCTGATAACAA
GTACGGAGACGTTGGCGTACTTCAGACCCACGGGGAAGACACGCATCGTG
GCGGACGCGTCGCCCGTAGGGTTGGGGGCTGTGTTGCTACAGCTACAAGA
CGAGAGGTGGCGAGTGATTGCGTATGCATCTCGACAACTGTCAGAAGTCG
AGCGACGGTACAGCCAAACAGAGAAGGAGGCGTTAGCACTCGTGTGGGCG
TGCGAACGGTTTCATCTGTATACGTTTGGCCGGGAGTTCGAGTTGGAGAC
GGATCACCGTCCACTGGAACACATATACGCAACTAAGTCGAAGCCATCAT
TTCGCGTGGAAAGGTGGGTGCTGAGACTACAGGCTTACCCATATAAAGTC
GTTTATCGTCCCGGGAAGACCAACATCGCTGACGCGCTGTCGAGGCTCAA
CAGCAAGTCAAATGACAAGTCAAGTGAGAACTATGACTATGTTAGAAGCG
TGGTGGAGGCGAGCACGCCAGTCAGTCTAACGCCACGCGAGATAGAACGG
GCATCGGGAGAAGACCCTGAGCTGAGACAGGTCAGGAGGTGTATCCAAAC
AGGACAGTGGGACGAATGTCAAGTGATATCCTATCGTCATGTGAAGACAG
AACTGAGCACATATGGGCAGCTCATACTACGCGGGACGAGAATCGTCATT
CCGAAGGTTTTGAGGAAGACCGTCGTGCAGTTAGCGCACGAAGGGCACCA
GGGCATCCAGAAAACGAAGAACCGACTGAGGACCAAGGTTTGGTGGCCCA
AAATGGAAGCAGATGCAGAGGCAGTGTGCAAACGCTGTCACGGGTGCCAG
GTAGTCAGCGAGCAGACACCGCAAGAACCANACGAAGAACCGACTGAGGA
CCAAGGTTTGGTGGCCCAAAATGGAAGCAGATGCAGAGGCAGTGTGCAAA
CGCTGTCACGGGTGCCAGGTAGTCAGCGAGCAGACACCGCCAGAACCAAT
GGCACGAGTAATGCCGCCAACAGGCGCATGGCAAGCCTGTGGAGCAGATC
TGTTGGGACCGCTACCAACAGGGGAGACTATCTTAGTCGTCGTGGATTAC
TACAGTCGCTTTTACGAGATTGCCATCATGAAGTCAACGTCAAGCCGAAA
GGTCATCGAAGCATTGGAGGTGATCTTCGCAAGATTTGGAAATCCATGCT
CTCTACGTACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000454 | genome | Sc0000454:156372..161103 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88222_cuf0 |
| Biotype | protein_coding |
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