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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88166_cuf0 >transcript:BL88166_cuf0-protein ID=transcript:BL88166_cuf0-protein|Name=transcript:BL88166_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=143bp
FKYYLWPCMNVDCTSLHYRNSLMETDEYAREDLFLEINMNLSEEELRNLR
NYVSGRILGERFVETADAHQIFTQLEKEKKLEPGNLSLLVKLLRRIRRQD
YADKAEKVAENERKDAIQNGSTQGMSHNTPTQSAAGQDPRLCI Run BLAST on NCBI mRNA from alignment at Sc0000096:855413..857589+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88166_cuf0 ID=transcript:BL88166_cuf0|Name=transcript:BL88166_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2177bp|location=Sequence derived from alignment at Sc0000096:855413..857589+ (Branchiostoma lanceolatum)
TTTCAAATATTATCTTTGGCCGTGTATGAACGTCGACTGTACATCTCTTC
ATTATCGAAATTCCTTGATGGAGACGGATGAGTATGCTCGCGAGGATCTG
TTTCTGGAGATTAATATGAATTTATCAGAAGAAGAACTTAGAAACCTGCG
GAACTATGTCAGTGGAAGAATTTTAGGAGAGAGATTCGTCGAAACCGCAG
ATGCTCACCAGATATTTACTCAACTGGAGAAAGAAAAGAAGTTAGAGCCG
GGAAATCTCTCACTTCTGGTAAAACTGTTGCGAAGAATCCGTAGACAAGA
CTATGCAGACAAGGCAGAGAAGGTTGCTGAAAATGAAAGGAAAGGTACGT
CAGTTTTTCTTTTCACTATTTAGTTAAACAGTTTTCATGCATATGATATC
TAAGTATAAATTATACATATAATGTTAAGTATAGCGTGAGACTGTGGACC
AACGACAAGCCTCCATTCCTTTTGGTTACACAACCATAACATAATAGCTG
AGTTTACGGTAATATAAGACCCCATTCACAGTGGGAAAATTTTTGACGTG
CGATAATGATGTGCGACTGAAACGTAGGTCTTTGACCCATGACGGGTTTG
CGGAAAAGGCAGGCTACCCTACCAGGCCAGGCTATGCTGCCAGACTACTA
GTAGTAGCCTTGCTGGGCCTAAAGGCAATTTTTGCTTATACTTGGATACG
TGGATCATCACTGAAATCCGGTAGATTTTCCAGTTACACAATGTTTTTTA
GAATTTTGAAACATGTTCAAACAATTGATGGATCTATGTTGCAACAGTTT
AGAAACTAATACTATGTAATGTCTTCAATGTTGGAAATTTGTTTAGCATG
TTAGAACATAGCAGAAAATATTTAGAACATCAAATAAATGTTGGAAATTG
TTGGAAACAGTTAACGTTACTTATCTTACATAGATTATTACGGGAACAGG
TTTTCTGCGCGTGAAAATTTGTGCGTGAAGTATTTGCGCGTGAAAAAATC
AATTACCCAAAATATGTCAGAAAATGTGCAGTACAAAATTCTTATACAGA
AAAATGTGACCCAGTGATGTCATTATCCATCTGCTACCTGAACTCTTTGT
TTAAAAAGCTACTGATTTTTGTCCCCTGGGAATAGGTTACTTTCCAAATC
ATGGGAAAATTTCTCGGAAATACAAGAAAATATTGCTAGTTTAAGGTTTT
GTATTGCAAAATGTTACAACTTGAGGCTTTTCGCCGATCTATTTATAAGC
TTAATTTCATATGTTCTCAAGCAGATTCTTTCATGCACAAATTTTGACCT
TTCTGCGCGTGAAAACTGAAGATTTGAAAACCACTGAAAAATTGATTATT
ACAAAGGTTTTGAAAATGAAAAAACAAAAGGCAACAAACACCCACACTGT
AATGTGGAATTGACTACAAACTTTCACCACATGTACAGCATGTAGTTGAT
AGTTACCAATATCAAATGTGTGTTTACTTTAATTTGTCTGGCCACAGTCA
CTACATGCGTAGATTCAACCTCCAACAAAGTTAAATTTATACAAAAATAC
AAGTGTAGAGCATGTGGACGCAGTGCACCTTCTCCATTACAAATCACAAA
GGAACATTATTCATTGTATAAGAAGAATACAAATTCTTGATCTATACTTA
GTAGGCTTTTGCTGCCCTCTTTTAAAGAACGTCTTACGGCGTTAGTGTGA
TGACTAAATAATGGTCGCAGCTATATGTTGACTGAAAAAACTACATTATC
TATCTTAAAGCCGACCTATTGTTACTGTGCCATGAAGTACTTACTTACTT
TCACCTTGGTGAAGTGAGAGGGAATTGGCTGAAAGTGCCTTTCTCAACAG
CATATCTTAAACATGAAAGGGATATGAACTCAAAACTTTGCGGATTTTAA
GTCAACATATTGTAGAAGAAATCAATCTTATAGCTTCTAAATGAATTAGT
TCTGTGAGGGTATAAGGTAATATTTTGTTCCTTCAGCAACTTCTCTTGCT
GCAGATGGCAGAATACAATGTACCATTTATGAAACAAGGGTCTGTTGTGT
GGTTCGTTGGTCCTAAAAAGTTATTTCTTTGAACGACAGATGCAATCCAG
AATGGGTCAACGCAAGGCATGTCCCACAACACACCAACACAATCTGCAGC
TGGCCAGGACCCCCGCCTATGTATACC Coding sequence (CDS) from alignment at Sc0000096:855413..857589+ >transcript:BL88166_cuf0 ID=transcript:BL88166_cuf0|Name=transcript:BL88166_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=858bp|location=Sequence derived from alignment at Sc0000096:855413..857589+ (Branchiostoma lanceolatum)
TTCAAATATTATCTTTGGCCGTGTATGAACGTCGACTGTACATCTCTTCA
TTATCGAAATTCCTTGATGGAGACGGATGAGTATGCTCGCGAGGATCTGT
TTCTGGAGATTAATATGAATTTATCAGAAGAAGAACTTAGAAACCTGCGG
AACTATGTCAGTGGAAGAATTTTAGGAGAGAGATTCGTCGAAACCGCAGA
TGCTCACCAGATATTTACTCAACTGGAGAAAGAAAAGAAGTTAGAGCCGG
GAAATCTCTCACTTCTGGTAAAACTGTTGCGAAGAATCCGTAGACAAGAC
TATGCAGACAAGGCAGAGAAGGTTGCTGAAAATGAAAGGAAAGATGCAAT
CCAGAATGGGTCAACGCAAGGCATGTCCCACAACACACCAACACAATCTG
CAGCTGGCCAGGACCCCCGCCTATGTATATTCAAATATTATCTTTGGCCG
TGTATGAACGTCGACTGTACATCTCTTCATTATCGAAATTCCTTGATGGA
GACGGATGAGTATGCTCGCGAGGATCTGTTTCTGGAGATTAATATGAATT
TATCAGAAGAAGAACTTAGAAACCTGCGGAACTATGTCAGTGGAAGAATT
TTAGGAGAGAGATTCGTCGAAACCGCAGATGCTCACCAGATATTTACTCA
ACTGGAGAAAGAAAAGAAGTTAGAGCCGGGAAATCTCTCACTTCTGGTAA
AACTGTTGCGAAGAATCCGTAGACAAGACTATGCAGACAAGGCAGAGAAG
GTTGCTGAAAATGAAAGGAAAGATGCAATCCAGAATGGGTCAACGCAAGG
CATGTCCCACAACACACCAACACAATCTGCAGCTGGCCAGGACCCCCGCC
TATGTATA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000096 | genome | Sc0000096:855413..857589 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88166_cuf0 |
| Biotype | protein_coding |
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