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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88110_cuf1 >transcript:BL88110_cuf1-protein ID=transcript:BL88110_cuf1-protein|Name=transcript:BL88110_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=189bp
MQLFCCTEIYIGQTSIVAKHTGEKPYMCGECRYRTIGKSQLSRHMRTHTG
EKPYKCAQCEYSAADKSSLDQHLAKHTGEKPYICEECEYRTAHKSHLSKH
IRIHTGEKPFKCDQCDFSAAQKSSLGSHLATHTGDKPYMCGECGYRCIRK
AQLSIHMRTHTCEKPYKCDQCDYSAARKSHFVLHLAKHT Run BLAST on NCBI mRNA from alignment at Sc0000519:36347..38466+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88110_cuf1 ID=transcript:BL88110_cuf1|Name=transcript:BL88110_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2120bp|location=Sequence derived from alignment at Sc0000519:36347..38466+ (Branchiostoma lanceolatum)
GTAGAGGCTAGCTAGCAAGATTGTGCGAGGGTAAAACTCAACACTGAAAG
AAGGTAAGAACGCGAATAATACTGAATATCTGCCTTCTCGTGAAGTAGAG
GAGCTATATGTGATTTCTATGGTGAATGGGCAACATTATGACGGGATGTA
AAGCTTTTTGGGGTGAGAAAATATCAGGGAGAGGGGTGCGACACCACACA
CACACATGGGTAATTTGTAAAGGAAAAACTCTCGGAAGGGTGTTATAGTA
TCACTAAAAATGAAACAGAAAGCGGATGAAAAGGGGCCATGCATACTTGC
ATTCTTGAGTTATCATATTTTCGGTTGGTATGTTTAATCCTTCAAATTTT
TTTGGTCCCTTAGGTTAGACATGGCAGATGCAGGTACTAGTAATGGGTCT
CCCACTGCTGTTCCCCAGGATGGGCCTCCTACTGGAATTTCATGGGACAG
AGATAAGACCAATGTTGAAGACAAGCCAACGGGAACAAAAAACAGTTCTG
GCAATCAGCTGGGAGCAGATACTGGAGATAAACCCCACATGTGTGGGGAG
TGCAGGTACAGGACAGCTGTCAAGCGTAACCTATCCAGACATATGAAAAC
CCATACTGGTGAGAAGCCCTACAAGTGTGACCAGTGTGACTATTCTGCTA
CATTGAAATCCACTTTGGACAGCCATGTAGCTAAACACACTGGTGAGAAA
CCCTTCATGTGTGGGGAGTGTGGGTACAGGACAGCTGACACGAGTAACTT
ATCCAGACATATGAAAACTCATACTGGTGAAAAACCCTACAAGTGTGGCA
AGTGTAAGTACAGAACAACTCAAAAGTTTCGCTTATCTGAACATATGAGG
ACCCATACTAGTGACAAACCCTAGAAGTGTGACCAGTGCGACTATTCTGC
TGCACAGAAATGCGCTTTATGCAAACATGTAGCCCAACACACCGGTGAGA
AACCATTCATGTGTGACGAGTGCGGGTACAGGACAGCTGTCAAGCGTAGC
CTATCAAGACATATGAGAACTCACACAGGGTGAAAAACCCTACAAGTGTG
ACCAGTGTGATTATTCTGCTGCACAGAAATCTACCTTGGACTGCCATCTA
GCCACACACACCGATGGGAAACCCTACATGTGTGGCGAGTGTGGGTACAG
GGCAACTCACAAAAGTAACCTTTCCAGACACATGAAAGCTCATTCTGGAG
AAAACCCCCACAAGTGCGACCAGTGTGATTATTCTGCTGCAGATGAAGCT
GCATTGGACATACATCTAGCCAAACACACCGGTGAGAAGCCCTACATGTG
TGACGAGTGCGGGTACAGGACAGCTAAGAAGTCTACCTTACTCCCAACAT
ATGAGAACCCATACTGGTGAAAAACCCTACAAATGTGACAAATGCAACTA
TTCTGCTGCACAGAAATTTACATTGGACAGACATCTATAGTAGCCAAACA
CACCGGTGAGAAACCCTACATGTGTGGGGAGTGCAGATACAGGACTATCG
GAAAGTCTCAGTTGTCCAGACATATGAGAACTCATACTGGTGAAAAGCCC
TACAAGTGTGCCCAGTGTGAGTATTCTGCTGCAGATAAATCCTCCTTGGA
CCAACATCTAGCAAAACACACAGGTGAGAAACCCTACATCTGCGAGGAGT
GTGAGTACAGGACAGCTCACAAGTCTCACCTATCCAAACATATAAGAATC
CATACAGGAGAAAAACCCTTCAAATGTGACCAGTGTGATTTTTCTGCTGC
ACAGAAATCCAGCTTGGGCAGCCATCTAGCCACACACACAGGTGACAAAC
CCTACATGTGTGGGGAGTGCGGGTACAGGTGCATCAGAAAGGCTCAGTTG
TCCATACATATGAGAACCCATACATGTGAAAAACCCTACAAGTGTGACCA
GTGTGATTATTCTGCAGCTCGAAAATCACATTTTGTCCTGCATCTAGCTA
AACACACTTAAAAAGACTGTAATTGTGTAGGTTGCAGGTACAGGGCAATA
GAAGCTATCCAGCAACACATACATGTTAATGGGAAGAAAGAAAATGGATG
TAAGAACACTACTACCTAGTGTGAGATTAGGTCATTTCACGGTTCCGGTT
GTGCATCTTCAGTCGCGATG Coding sequence (CDS) from alignment at Sc0000519:36347..38466+ >transcript:BL88110_cuf1 ID=transcript:BL88110_cuf1|Name=transcript:BL88110_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=570bp|location=Sequence derived from alignment at Sc0000519:36347..38466+ (Branchiostoma lanceolatum)
ATGCAACTATTCTGCTGCACAGAAATTTACATTGGACAGACATCTATAGT
AGCCAAACACACCGGTGAGAAACCCTACATGTGTGGGGAGTGCAGATACA
GGACTATCGGAAAGTCTCAGTTGTCCAGACATATGAGAACTCATACTGGT
GAAAAGCCCTACAAGTGTGCCCAGTGTGAGTATTCTGCTGCAGATAAATC
CTCCTTGGACCAACATCTAGCAAAACACACAGGTGAGAAACCCTACATCT
GCGAGGAGTGTGAGTACAGGACAGCTCACAAGTCTCACCTATCCAAACAT
ATAAGAATCCATACAGGAGAAAAACCCTTCAAATGTGACCAGTGTGATTT
TTCTGCTGCACAGAAATCCAGCTTGGGCAGCCATCTAGCCACACACACAG
GTGACAAACCCTACATGTGTGGGGAGTGCGGGTACAGGTGCATCAGAAAG
GCTCAGTTGTCCATACATATGAGAACCCATACATGTGAAAAACCCTACAA
GTGTGACCAGTGTGATTATTCTGCAGCTCGAAAATCACATTTTGTCCTGC
ATCTAGCTAAACACACTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000519 | genome | Sc0000519:36347..38466 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88110_cuf1 |
| Biotype | protein_coding |
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