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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88096_cuf0 >transcript:BL88096_cuf0-protein ID=transcript:BL88096_cuf0-protein|Name=transcript:BL88096_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=337bp
GASIFSCISYRRAAIELLSSTTLPLIIYDTVTMAPRNAHHRRWFETHWCR
SRVAVNASLEKGLPAFSVSLDTDNCWQYCGPREILDILTPVQTQLEAAMV
SWQLANPEPSRDNAGELMVSKTVLCKPAVPVDQLKCDDVRSTVSAWIRAL
NPGTTLKFSDPTHKPPYWPEDIPWAPPSKAPKGYQGDWTMAMRRVLRSML
SHVGEDPATYCAGPVPSQQTRPVPAPRTPRHRPAEAGPTPDGNLASRLNQ
DQRRDPSTPSPTRAVSSHLSDSSAPDFSMLSGRFLFRRDVSTRIHFHXLF
RRDISTRIDFHPHPITSVITHLPGRDTPEEVSTTATQ Run BLAST on NCBI mRNA from alignment at Sc0000261:241254..243823- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88096_cuf0 ID=transcript:BL88096_cuf0|Name=transcript:BL88096_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2570bp|location=Sequence derived from alignment at Sc0000261:241254..243823- (Branchiostoma lanceolatum)
CGGGGCGTCAATATTTTCTTGCATTTCCTATCGAAGAGCTGCTATCGAAT
TATTATCCTCCACGACGCTACCCTTAATCATCTACGACACTGTCACGATG
GCTCCGCGCAACGCTCATCACAGGAGGTGGTTCGAGACGCATTGGTGTCG
CTCTCGTGTTGCAGTAAACGCCAGCCTAGAAAAAGGCTTGCCCGCCTTTT
CAGTATCCCTGGACACGGACAACTGCTGGCAGTACTGCGGGCCACGAGAG
ATTCTGGACATTCTAACTCCAGTGCAGACGCAACTGGAGGCAGCCATGGT
GTCCTGGCAGCTGGCAAACCCCGAGCCAAGCAGGGACAACGCAGGTAACG
AATCTAACTTCATATGCGAATTCTCGGTGTATCCGTTCTAGTTCTTGCCC
TGTCCCAGGCGCCCTGTCTACTGTACAGCTTTCAATGTGATGTCGTTGAT
TGATTATAGCAAGATTATATAAAGGAATGAAGACCTTTATTGCACATTTC
TGCCACACTTGGCTAAGCCAGGTCACAACAAAACAAAATAACAAGTACAG
TTAACGGATACAAAAGAATATGACTATCATTAGATAAATTCTACTTCTCC
TCGCTTTTCGGTTATAGTAGATATAAAAGAACAGACGTGTTTAGTACATT
TTAGTGTTTAGTACATTATAGTACATTTTTCTGCTTGATTACCGATTTAT
TTGGCAAATACATGTTTCAACCGTCGCCACACCATGACTGAGATTTGTAA
CATTTTACAGGTGAGCTCATGGTGTCGAAGACGGTGCTTTGCAAACCAGC
GGTACCGGTTGACCAGCTGAAGTGCGACGACGTCCGGTCGACAGTTTCGG
CTTGGATCAGGGCGCTGAACCCCGGCACCACGCTAAAGTTCAGCGACCCG
ACGCACAAGCCGCCGTACTGGCCGGAAGACATTCCGTGGGCCCCCCCTTC
CAAGGCACCTAAGGGATACCAAGGAGGTATTGTAACACAATGTTGTTTTT
AGATACATGACGTTCCAAATTTCAATCTTGAGTGTGCTTTCCGCTTAACA
TCTTGTCTAGTCTTTGTAATGTAGACATTTTCTCTCATGCTCATGTTCTT
GTGCAGTGGCAGCGCTTATTTTCTTAAGTTGAGTCATCGCCAGTTTGTTT
TCACGTTGTCTTGTTTGTGACATATGAGTTGTTGATGTTGTGATGTTTTG
TGTGTCAAAAATAAACGCAACATCAAAAGATGGTTTGTTCGTGTGGCGTA
ACGGCAGGGTGACCAAGAGGTCCCGAGTTCGAATCCCCCCGACGCCACCG
ATGTTGTGCCCTTGGGAAAGGCACTTTCCTCACTTCGCCCAGGTGTTGTG
TTTTCCTGAGTCTGTATTTTGCTTATTTAAAGTACTTATCCCTCCCGTAC
AGACTGGACCATGGCGATGAGGAGGGTCCTCCGAAGCATGTTGTCACATG
TCGGGGAAGACCCGGCGACATACTGTGCCGGTCCGGTGCCCAGTCAGCAG
ACAAGGCCCGTACCGGCACCCCGCACACCCCGACACAGACCCGCTGAGGC
CGGACCAACGCCGGATGGGAACCTGGCCTCGCGGCTGAACCAGGACCAGC
GTAGGGATCCCAGCACACCGAGCCCTACACGTGCTGTCTCCAGCCACCTC
TCCGACAGCAGTGCCCCTGACTTCTCAATGCTGTCCGGCCGCTTCCTCTT
TCGGCGTGACGTCTCCACCCGAATCCACTTCCACNTCCTCTTTCGGCGTG
ACATCTCCACCCGAATCGACTTCCACCCCCATCCCATCACCAGCGTCATC
ACCCATCTCCCCGGTAGAGATACGCCAGAAGAGGTCTCGACCACTGCCAC
CCAGTAGAGAACCCAGTAAGAGAGATAGGAAAGCTAAGAAGATTTACACA
CCAGCAGGTCGAATGTAGACCTTTATTGCACATTTCTGCCACACTTGGCT
AAGTACAGGTCACAACAAAACAAAACAACAAGTACAGTTAACGGATACAA
AAAGAATATAACTATCATTTTATAAATTCTACTTCTCCTCGCTTTTCGGT
TATAGTAGATATAAAAGAAAAGACGTGTTTTTCAATGGGAGGTTTGTCTA
GTCGCATTAGGAATATGAATTTTTGTACAGTGCTTAAATGTGTGAAGTAG
GGAAATAAGTTTTCTACAAGCTTATACAGTTCATTTCTTTCTTTGGTATA
TAATCCACATTCTACCACAGAATGACATTCGTTTTCTATTCTATTCAAAT
TACAATGTTTACATAATCGTTGTTCTAGAGGAGTGCGGGTATGTCTTCCT
GTTTCAATATGTAGTTTGTGGCAGCTGATTCTTAGTCTTGTGACTGTATT
CCTGACCCTCATATTTGCATTACTTAGATATTTTTCTTCATGCTATTTAC
ACCTGTTGCCTACCTTTTTTTAAAAATCTAATTTCGGTTGATTTCTTATG
TTTTCCTAGTTGATTTCTTATGTTTTCTTAGTTGATTTCTTATGTTTTCT
TAGTTGTTTTTTTAGTTCTTAGTTCTTATGTACCAATAGTTAGTCAATTG
CTGAATAAAGTTGTCCGAAA Coding sequence (CDS) from alignment at Sc0000261:241254..243823- >transcript:BL88096_cuf0 ID=transcript:BL88096_cuf0|Name=transcript:BL88096_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3042bp|location=Sequence derived from alignment at Sc0000261:241254..243823- (Branchiostoma lanceolatum)
GGGGCGTCAATATTTTCTTGCATTTCCTATCGAAGAGCTGCTATCGAATT
ATTATCCTCCACGACGCTACCCTTAATCATCTACGACACTGTCACGATGG
CTCCGCGCAACGCTCATCACAGGAGGTGGTTCGAGACGCATTGGTGTCGC
TCTCGTGTTGCAGTAAACGCCAGCCTAGAAAAAGGCTTGCCCGCCTTTTC
AGTATCCCTGGACACGGACAACTGCTGGCAGTACTGCGGGCCACGAGAGA
TTCTGGACATTCTAACTCCAGTGCAGACGCAACTGGAGGCAGCCATGGTG
TCCTGGCAGCTGGCAAACCCCGAGCCAAGCAGGGACAACGCAGGTGAGCT
CATGGTGTCGAAGACGGTGCTTTGCAAACCAGCGGTACCGGTTGACCAGC
TGAAGTGCGACGACGTCCGGTCGACAGTTTCGGCTTGGATCAGGGCGCTG
AACCCCGGCACCACGCTAAAGTTCAGCGACCCGACGCACAAGCCGCCGTA
CTGGCCGGAAGACATTCCGTGGGCCCCCCCTTCCAAGGCACCTAAGGGAT
ACCAAGGAGACTGGACCATGGCGATGAGGAGGGTCCTCCGAAGCATGTTG
TCACATGTCGGGGAAGACCCGGCGACATACTGTGCCGGTCCGGTGCCCAG
TCAGCAGACAAGGCCCGTACCGGCACCCCGCACACCCCGACACAGACCCG
CTGAGGCCGGACCAACGCCGGATGGGAACCTGGCCTCGCGGCTGAACCAG
GACCAGCGTAGGGATCCCAGCACACCGAGCCCTACACGTGCTGTCTCCAG
CCACCTCTCCGACAGCAGTGCCCCTGACTTCTCAATGCTGTCCGGCCGCT
TCCTCTTTCGGCGTGACGTCTCCACCCGAATCCACTTCCACNTCCTCTTT
CGGCGTGACATCTCCACCCGAATCGACTTCCACCCCCATCCCATCACCAG
CGTCATCACCCATCTCCCCGGTAGAGATACGCCAGAAGAGGTCTCGACCA
CTGCCACCCAGTAGGGGGCGTCAATATTTTCTTGCATTTCCTATCGAAGA
GCTGCTATCGAATTATTATCCTCCACGACGCTACCCTTAATCATCTACGA
CACTGTCACGATGGCTCCGCGCAACGCTCATCACAGGAGGTGGTTCGAGA
CGCATTGGTGTCGCTCTCGTGTTGCAGTAAACGCCAGCCTAGAAAAAGGC
TTGCCCGCCTTTTCAGTATCCCTGGACACGGACAACTGCTGGCAGTACTG
CGGGCCACGAGAGATTCTGGACATTCTAACTCCAGTGCAGACGCAACTGG
AGGCAGCCATGGTGTCCTGGCAGCTGGCAAACCCCGAGCCAAGCAGGGAC
AACGCAGGTGAGCTCATGGTGTCGAAGACGGTGCTTTGCAAACCAGCGGT
ACCGGTTGACCAGCTGAAGTGCGACGACGTCCGGTCGACAGTTTCGGCTT
GGATCAGGGCGCTGAACCCCGGCACCACGCTAAAGTTCAGCGACCCGACG
CACAAGCCGCCGTACTGGCCGGAAGACATTCCGTGGGCCCCCCCTTCCAA
GGCACCTAAGGGATACCAAGGAGACTGGACCATGGCGATGAGGAGGGTCC
TCCGAAGCATGTTGTCACATGTCGGGGAAGACCCGGCGACATACTGTGCC
GGTCCGGTGCCCAGTCAGCAGACAAGGCCCGTACCGGCACCCCGCACACC
CCGACACAGACCCGCTGAGGCCGGACCAACGCCGGATGGGAACCTGGCCT
CGCGGCTGAACCAGGACCAGCGTAGGGATCCCAGCACACCGAGCCCTACA
CGTGCTGTCTCCAGCCACCTCTCCGACAGCAGTGCCCCTGACTTCTCAAT
GCTGTCCGGCCGCTTCCTCTTTCGGCGTGACGTCTCCACCCGAATCCACT
TCCACNTCCTCTTTCGGCGTGACATCTCCACCCGAATCGACTTCCACCCC
CATCCCATCACCAGCGTCATCACCCATCTCCCCGGTAGAGATACGCCAGA
AGAGGTCTCGACCACTGCCACCCAGTAGGGGGCGTCAATATTTTCTTGCA
TTTCCTATCGAAGAGCTGCTATCGAATTATTATCCTCCACGACGCTACCC
TTAATCATCTACGACACTGTCACGATGGCTCCGCGCAACGCTCATCACAG
GAGGTGGTTCGAGACGCATTGGTGTCGCTCTCGTGTTGCAGTAAACGCCA
GCCTAGAAAAAGGCTTGCCCGCCTTTTCAGTATCCCTGGACACGGACAAC
TGCTGGCAGTACTGCGGGCCACGAGAGATTCTGGACATTCTAACTCCAGT
GCAGACGCAACTGGAGGCAGCCATGGTGTCCTGGCAGCTGGCAAACCCCG
AGCCAAGCAGGGACAACGCAGGTGAGCTCATGGTGTCGAAGACGGTGCTT
TGCAAACCAGCGGTACCGGTTGACCAGCTGAAGTGCGACGACGTCCGGTC
GACAGTTTCGGCTTGGATCAGGGCGCTGAACCCCGGCACCACGCTAAAGT
TCAGCGACCCGACGCACAAGCCGCCGTACTGGCCGGAAGACATTCCGTGG
GCCCCCCCTTCCAAGGCACCTAAGGGATACCAAGGAGACTGGACCATGGC
GATGAGGAGGGTCCTCCGAAGCATGTTGTCACATGTCGGGGAAGACCCGG
CGACATACTGTGCCGGTCCGGTGCCCAGTCAGCAGACAAGGCCCGTACCG
GCACCCCGCACACCCCGACACAGACCCGCTGAGGCCGGACCAACGCCGGA
TGGGAACCTGGCCTCGCGGCTGAACCAGGACCAGCGTAGGGATCCCAGCA
CACCGAGCCCTACACGTGCTGTCTCCAGCCACCTCTCCGACAGCAGTGCC
CCTGACTTCTCAATGCTGTCCGGCCGCTTCCTCTTTCGGCGTGACGTCTC
CACCCGAATCCACTTCCACNTCCTCTTTCGGCGTGACATCTCCACCCGAA
TCGACTTCCACCCCCATCCCATCACCAGCGTCATCACCCATCTCCCCGGT
AGAGATACGCCAGAAGAGGTCTCGACCACTGCCACCCAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000261 | genome | Sc0000261:241254..243823 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88096_cuf0 |
| Biotype | protein_coding |
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