transcript:BL87879_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87879_cuf0
Unique Nametranscript:BL87879_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87879_cuf0

>transcript:BL87879_cuf0-protein ID=transcript:BL87879_cuf0-protein|Name=transcript:BL87879_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=163bp
MVCKEEVFSWFQSLTSPKRIEFLCGLLDFCHPIELRFLGTCLEELCRKDY
NFLRDSEQKANNTHELQSLDDIGDDTVRTKLIVYLALLYTTNSQGSNVLS
HTLNHVESSILNGLQLTEQIKEEFLLLLAMAANHPAFSIHQRLTFSTQME
RLQAQPTVEVCKV
Run BLAST on NCBI

mRNA from alignment at xfSc0024845:5..657+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87879_cuf0 ID=transcript:BL87879_cuf0|Name=transcript:BL87879_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=653bp|location=Sequence derived from alignment at xfSc0024845:5..657+ (Branchiostoma lanceolatum)
ATTTTTGTTACGTATGGGGTCTTGTAAAGTGCCCGGATGAGGTTTCCTAT
GCCAAAATTCGACAGTAATGGCGGCCGGTCGACCCAGTGATCAGCATATA
CCGGGGTTCTTCTCTTGTTTTCTCTTGCTGGAGTAAATGTATCGAGCCGA
CGTTACGCAGAAATGGTGTGCAAGGAAGAGGTCTTCTCCTGGTTCCAAAG
TTTGACCAGTCCCAAAAGGATAGAGTTTTTGTGCGGGCTGTTGGATTTCT
GTCACCCTATCGAGCTTCGATTCTTGGGAACCTGTCTGGAAGAGCTGTGC
CGAAAGGATTACAACTTTCTCAGGGACTCCGAGCAAAAGGCGAACAACAC
TCACGAACTACAGTCACTGGACGATATCGGAGATGATACCGTACGGACGA
AACTTATCGTGTATCTGGCTTTGTTGTACACAACGAATAGTCAGGGGTCG
AACGTTCTGTCCCATACATTGAATCACGTTGAGAGCTCCATTCTGAATGG
GCTGCAGCTCACCGAGCAGATCAAGGAGGAGTTTCTTCTGCTCCTCGCCA
TGGCAGCTAACCACCCCGCGTTTTCCATCCACCAGCGACTGACTTTCAGT
ACCCAGATGGAAAGGCTACAAGCTCAGCCAACTGTTGAAGTGTGTAAGGT
AAG

Coding sequence (CDS) from alignment at xfSc0024845:5..657+

>transcript:BL87879_cuf0 ID=transcript:BL87879_cuf0|Name=transcript:BL87879_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=489bp|location=Sequence derived from alignment at xfSc0024845:5..657+ (Branchiostoma lanceolatum)
ATGGTGTGCAAGGAAGAGGTCTTCTCCTGGTTCCAAAGTTTGACCAGTCC
CAAAAGGATAGAGTTTTTGTGCGGGCTGTTGGATTTCTGTCACCCTATCG
AGCTTCGATTCTTGGGAACCTGTCTGGAAGAGCTGTGCCGAAAGGATTAC
AACTTTCTCAGGGACTCCGAGCAAAAGGCGAACAACACTCACGAACTACA
GTCACTGGACGATATCGGAGATGATACCGTACGGACGAAACTTATCGTGT
ATCTGGCTTTGTTGTACACAACGAATAGTCAGGGGTCGAACGTTCTGTCC
CATACATTGAATCACGTTGAGAGCTCCATTCTGAATGGGCTGCAGCTCAC
CGAGCAGATCAAGGAGGAGTTTCTTCTGCTCCTCGCCATGGCAGCTAACC
ACCCCGCGTTTTCCATCCACCAGCGACTGACTTTCAGTACCCAGATGGAA
AGGCTACAAGCTCAGCCAACTGTTGAAGTGTGTAAGGTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87879gene:BL87879Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87879_cuf0-E1BL87879_cuf0-E1-1564476830-546954Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87879_cuf0transcript:BL87879_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0024845genomexfSc0024845:5..657 +
Properties
Property NameValue
Transcript idBL87879_cuf0
Biotypeprotein_coding