transcript:BL87160_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87160_cuf0
Unique Nametranscript:BL87160_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87160_cuf0

>transcript:BL87160_cuf0-protein ID=transcript:BL87160_cuf0-protein|Name=transcript:BL87160_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=170bp
MFTATTSSSSTGTASIAIPSTLVAETTASGTTTMAAETTGEATTTSPNHN
VTTIPYVTTNITVPTAVNVTNNSNTTTVPITPGVTDITTAPTTSDVTTIT
IASTTPDITISSTTPDITTEATTALLTPDATTSNVSTTAPETSNTTETTT
ISTTPPDATTEPSTAITTRS
Run BLAST on NCBI

mRNA from alignment at xfSc0013569:336..936+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87160_cuf0 ID=transcript:BL87160_cuf0|Name=transcript:BL87160_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=601bp|location=Sequence derived from alignment at xfSc0013569:336..936+ (Branchiostoma lanceolatum)
GTTACGTAGATTTATCCATCACTTGCTACTTTCCAGTCAGCAGTATCTAT
ACCTGCCATTGTACATGTCATGACTTGTCAAAATCAAATCAATGTTCACA
GCAACTACTTCAAGCAGCAGCACAGGGACAGCATCGATCGCAATACCTAG
TACGCTTGTTGCTGAAACGACCGCATCTGGAACGACGACCATGGCTGCGG
AAACGACAGGCGAGGCAACAACTACTTCTCCCAATCATAATGTTACCACT
ATCCCTTACGTCACTACCAACATCACAGTACCAACCGCTGTCAATGTCAC
TAACAATAGTAACACCACCACAGTTCCAATCACTCCTGGCGTCACTGACA
TCACAACGGCACCAACCACTAGTGATGTCACTACCATCACCATAGCATCA
ACCACTCCCGACATCACTATTAGCAGCACTACTCCTGACATCACTACTGA
AGCCACAACTGCACTACTGACACCCGATGCCACCACCAGCAATGTTTCAA
CGACAGCTCCCGAAACCTCTAACACTACCGAAACCACCACTATATCAACA
ACGCCTCCCGATGCCACCACGGAGCCATCAACTGCTATTACAACCAGATC
C

Coding sequence (CDS) from alignment at xfSc0013569:336..936+

>transcript:BL87160_cuf0 ID=transcript:BL87160_cuf0|Name=transcript:BL87160_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=510bp|location=Sequence derived from alignment at xfSc0013569:336..936+ (Branchiostoma lanceolatum)
ATGTTCACAGCAACTACTTCAAGCAGCAGCACAGGGACAGCATCGATCGC
AATACCTAGTACGCTTGTTGCTGAAACGACCGCATCTGGAACGACGACCA
TGGCTGCGGAAACGACAGGCGAGGCAACAACTACTTCTCCCAATCATAAT
GTTACCACTATCCCTTACGTCACTACCAACATCACAGTACCAACCGCTGT
CAATGTCACTAACAATAGTAACACCACCACAGTTCCAATCACTCCTGGCG
TCACTGACATCACAACGGCACCAACCACTAGTGATGTCACTACCATCACC
ATAGCATCAACCACTCCCGACATCACTATTAGCAGCACTACTCCTGACAT
CACTACTGAAGCCACAACTGCACTACTGACACCCGATGCCACCACCAGCA
ATGTTTCAACGACAGCTCCCGAAACCTCTAACACTACCGAAACCACCACT
ATATCAACAACGCCTCCCGATGCCACCACGGAGCCATCAACTGCTATTAC
AACCAGATCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87160gene:BL87160Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87160_cuf0-E1BL87160_cuf0-E1-1564476830-542791Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87160_cuf0transcript:BL87160_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0013569genomexfSc0013569:336..936 +
Properties
Property NameValue
Transcript idBL87160_cuf0
Biotypeprotein_coding