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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87142_cuf1 >transcript:BL87142_cuf1-protein ID=transcript:BL87142_cuf1-protein|Name=transcript:BL87142_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=334bp
MTAGFTPTSYLLTMPTTLTTTSAKTFPVKSTRPGLQSTTRGVATSTSSIN
EESNAYVGGSVEPEKVSFGGEGSDPGKFLRNYGVAVSADNEIYVTDVNNE
RIQVFSINGVFLRLFPALVPGGHEQKLMHPHDVALDANGFLWVVGNVKVG
FLHEVHVVQYNRDGQPMTTLKLNSFARFPTIAVDAPNNKIVVAVSHGIFE
FSDIGLSGSFEIGKGEAIGYITHGNDGSILVTDRSSNSVRVYNRTGKLLL
KFGEGGTGEGQLHFPQGICTDKFGHVMVANWGNDRVDMFTSRGEFVRTVV
NTPSPLAIAIGPAGQLVVTDSLADTVIIFRLHGL Run BLAST on NCBI mRNA from alignment at Sc0000000:9864739..9867548+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87142_cuf1 ID=transcript:BL87142_cuf1|Name=transcript:BL87142_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2810bp|location=Sequence derived from alignment at Sc0000000:9864739..9867548+ (Branchiostoma lanceolatum)
CGGACGATGCATTTTTACGCACAGTGTGAAAATGGCAAATCTCTGGACCT
TCAAACTTACCACACTTGTAGTTTATAATACGGAGGCTGTGACAATGTAA
AAAGTTTACGCAGGGGATGAAAGATTGTTGAGAAATATCTCTCAGAAAAG
TGCGCGCGCCAGTGTCACTTCCGGGTGGTTAGATCCGGTGACCTTTGACC
TTCGTGAAATGTTACGATAATATAAATTAGCCTTTTTTATTGCAAATAGC
TTGATAGCTATAGATCAGGCCGGCCTGCAATAAATTGTGGAAAGAGGATT
TACTGCATATTTGTGATTTCTGATACATCTTAGTTGTAAGGCTGAATGGT
TCGTTGATAATTGAAAAGGGGCCATCTAGATCTAACTTTGTGACTTTTCC
CGGAATTTCTAGATCCCATCTGTGCCATGCTGTAAAAACATACTTTTCAG
CAGGTTGACCACTCCTGTATTGAAAGAAAAAGATAAACGAACACTTTTTC
TTTACTTGCTCTAAAACACTACTTGGACTGAGCAGAGATGCAATTTGTGT
GGGTCAATACTTGTACATACTATAAATACTTCACGGAGAATTGTGTCCTA
CGGACTCTTGTTGTTATTCAAATAGACTACCAAGACCAGGCTTACCAGTT
CAATTCTACGTAATTAATATAACAGTTAGGCATTCTGTCTTGTTAAGGAA
ATATCGGAACTGTCCATTACTGTTGATGCCTTGAAGCGCAACCTGAACAA
CGAGCGAAATAGAAGTGCCGCATTGGAAAAGCGTTTAGGGGAGGAAATGA
CTGCAGGTTAGTGTTTTAGACTTAGTACCCTTTTTGTTAGCGTATCTTGC
CGGTAAATTGCCTGAACCCTATTCAGACCGGGCTCAACTCAAAATACATT
TAATGCATGAGGAGTAATGTATTGTTACTTTGTTCCTTCCTCCTGTCTCT
ATCTAATGTCTTAACTAGACTTGCCTGGGAAGAGGAGGTCGATGCATTCT
TTTCTTCATATGACCAACCCTCCCAACATTTTTTCAAGTTTAAAAAGAAA
TCTTAAACACAACTGTTAATCAAATTAAGTCATACAATCTACACAATAGT
TTCATTCACAGGTTTTACGCCAACCTCATATCTCTTAACGATGCCAACGA
CTTTGACAACAACGTCAGCAAAGACGTTCCCCGTAAAATCAACAAGGCCT
GGACTACAATCGACCACACGGGGTGTTGCTACATCGACATCGTCCATCAA
CGAAGGTACGACATCCCTAATAAACCAGCCTGAAAAACGCAAATCCTTAA
GTTAAAAAATGGACTAATTGATTGCAATATGGGCACGCAGAAAGAAGTGG
CAACGTTTACGTTATTATGATTACAGAACAAGCGGTATGAATTTATATAT
TACAATCAAAATTCAGTATTAGTCTAACACAAAAAGGAAGCGAGCACACC
AAATTCTTACTGCAACCTTCGTCAGATTCAAGCGGCAATGATCAGTCACA
GTCAGTGACCTAACAGACACATGGCGTCAACAAAATGTTATCAGTAACTG
GCGGTGATAGATCTGACAGAAGGGAAAAGAAACTTATCTTCCGAATTTAT
TAAATCTTCCATTTTCATTTAGAATCCCGCAATTTTACAAAGGACGTTTC
TCATTGGTTGAAAACACTTGGCTACTGCATAACCGGTGAATTTTGTTACG
GTGTCGAGAGTGATTTGTAACGTTCTTTTTTATGCTTACAGAAAGCAATG
CCTATGTAGGAGGGAGCGTAGAACCAGAAAAGGTCAGCTTTGGAGGGGAG
GGATCGGATCCGGGAAAATTCCTCAGAAACTACGGAGTGGCCGTGTCTGC
TGACAATGAGATATACGTAACCGATGTGAACAATGAGCGAATCCAGGTCT
TCAGCATAAATGGGGTCTTTCTCCGCCTGTTCCCAGCGCTAGTTCCGGGT
GGACATGAGCAAAAGCTAATGCACCCTCACGATGTTGCCCTTGACGCAAA
TGGTTTCCTATGGGTAGTGGGTAATGTCAAGGTTGGGTTCCTTCATGAAG
TACATGTAGTGCAGTACAACCGAGATGGCCAGCCTATGACAACACTTAAG
TTAAACTCTTTTGCTAGGTTCCCAACCATTGCCGTAGACGCACCAAATAA
CAAAATCGTTGTTGCTGTGTCACATGGAATTTTTGAGTTTTCAGACATCG
GTTTGTCAGGCAGTTTCGAAATCGGGAAGGGTGAAGCAATCGGATACATC
ACACACGGAAATGATGGGAGTATCCTTGTTACCGACCGTTCTTCCAATAG
TGTCCGGGTGTACAATCGCACTGGGAAGCTCCTACTCAAGTTCGGAGAAG
GGGGGACCGGTGAAGGGCAATTGCATTTCCCCCAAGGCATCTGTACAGAC
AAATTTGGTCACGTAATGGTGGCGAACTGGGGGAACGATCGTGTAGACAT
GTTCACAAGTCGTGGGGAGTTTGTCCGCACCGTCGTGAATACTCCCTCTC
CTTTGGCTATTGCCATAGGACCAGCTGGGCAGCTGGTGGTGACTGACTCA
TTGGCTGACACTGTGATCATTTTTCGTCTGCATGGTTTATAAAGTATCAG
AAGTTCTTGACGCAACCAAAAAAAAAATCGAGCTGTTTACCACAAATTTT
TTTCGTGCTTTTGATAAAGTTTGGCGCAAAGGTCGGATATACAAGTTACA
AAAAAACGGGGTGGAATGACTATTTGAACTGGTTTCACAGCAATCTCCAA
GGCAGAGTATAACGGACAACGTTCTAATTGACTCAATACATGTGCAGGTG
TACCTCAGGG Coding sequence (CDS) from alignment at Sc0000000:9864739..9867548+ >transcript:BL87142_cuf1 ID=transcript:BL87142_cuf1|Name=transcript:BL87142_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3015bp|location=Sequence derived from alignment at Sc0000000:9864739..9867548+ (Branchiostoma lanceolatum)
ATGACTGCAGGTTTTACGCCAACCTCATATCTCTTAACGATGCCAACGAC
TTTGACAACAACGTCAGCAAAGACGTTCCCCGTAAAATCAACAAGGCCTG
GACTACAATCGACCACACGGGGTGTTGCTACATCGACATCGTCCATCAAC
GAAGAAAGCAATGCCTATGTAGGAGGGAGCGTAGAACCAGAAAAGGTCAG
CTTTGGAGGGGAGGGATCGGATCCGGGAAAATTCCTCAGAAACTACGGAG
TGGCCGTGTCTGCTGACAATGAGATATACGTAACCGATGTGAACAATGAG
CGAATCCAGGTCTTCAGCATAAATGGGGTCTTTCTCCGCCTGTTCCCAGC
GCTAGTTCCGGGTGGACATGAGCAAAAGCTAATGCACCCTCACGATGTTG
CCCTTGACGCAAATGGTTTCCTATGGGTAGTGGGTAATGTCAAGGTTGGG
TTCCTTCATGAAGTACATGTAGTGCAGTACAACCGAGATGGCCAGCCTAT
GACAACACTTAAGTTAAACTCTTTTGCTAGGTTCCCAACCATTGCCGTAG
ACGCACCAAATAACAAAATCGTTGTTGCTGTGTCACATGGAATTTTTGAG
TTTTCAGACATCGGTTTGTCAGGCAGTTTCGAAATCGGGAAGGGTGAAGC
AATCGGATACATCACACACGGAAATGATGGGAGTATCCTTGTTACCGACC
GTTCTTCCAATAGTGTCCGGGTGTACAATCGCACTGGGAAGCTCCTACTC
AAGTTCGGAGAAGGGGGGACCGGTGAAGGGCAATTGCATTTCCCCCAAGG
CATCTGTACAGACAAATTTGGTCACGTAATGGTGGCGAACTGGGGGAACG
ATCGTGTAGACATGTTCACAAGTCGTGGGGAGTTTGTCCGCACCGTCGTG
AATACTCCCTCTCCTTTGGCTATTGCCATAGGACCAGCTGGGCAGCTGGT
GGTGACTGACTCATTGGCTGACACTGTGATCATTTTTCGTCTGCATGGTT
TATAAATGACTGCAGGTTTTACGCCAACCTCATATCTCTTAACGATGCCA
ACGACTTTGACAACAACGTCAGCAAAGACGTTCCCCGTAAAATCAACAAG
GCCTGGACTACAATCGACCACACGGGGTGTTGCTACATCGACATCGTCCA
TCAACGAAGAAAGCAATGCCTATGTAGGAGGGAGCGTAGAACCAGAAAAG
GTCAGCTTTGGAGGGGAGGGATCGGATCCGGGAAAATTCCTCAGAAACTA
CGGAGTGGCCGTGTCTGCTGACAATGAGATATACGTAACCGATGTGAACA
ATGAGCGAATCCAGGTCTTCAGCATAAATGGGGTCTTTCTCCGCCTGTTC
CCAGCGCTAGTTCCGGGTGGACATGAGCAAAAGCTAATGCACCCTCACGA
TGTTGCCCTTGACGCAAATGGTTTCCTATGGGTAGTGGGTAATGTCAAGG
TTGGGTTCCTTCATGAAGTACATGTAGTGCAGTACAACCGAGATGGCCAG
CCTATGACAACACTTAAGTTAAACTCTTTTGCTAGGTTCCCAACCATTGC
CGTAGACGCACCAAATAACAAAATCGTTGTTGCTGTGTCACATGGAATTT
TTGAGTTTTCAGACATCGGTTTGTCAGGCAGTTTCGAAATCGGGAAGGGT
GAAGCAATCGGATACATCACACACGGAAATGATGGGAGTATCCTTGTTAC
CGACCGTTCTTCCAATAGTGTCCGGGTGTACAATCGCACTGGGAAGCTCC
TACTCAAGTTCGGAGAAGGGGGGACCGGTGAAGGGCAATTGCATTTCCCC
CAAGGCATCTGTACAGACAAATTTGGTCACGTAATGGTGGCGAACTGGGG
GAACGATCGTGTAGACATGTTCACAAGTCGTGGGGAGTTTGTCCGCACCG
TCGTGAATACTCCCTCTCCTTTGGCTATTGCCATAGGACCAGCTGGGCAG
CTGGTGGTGACTGACTCATTGGCTGACACTGTGATCATTTTTCGTCTGCA
TGGTTTATAAATGACTGCAGGTTTTACGCCAACCTCATATCTCTTAACGA
TGCCAACGACTTTGACAACAACGTCAGCAAAGACGTTCCCCGTAAAATCA
ACAAGGCCTGGACTACAATCGACCACACGGGGTGTTGCTACATCGACATC
GTCCATCAACGAAGAAAGCAATGCCTATGTAGGAGGGAGCGTAGAACCAG
AAAAGGTCAGCTTTGGAGGGGAGGGATCGGATCCGGGAAAATTCCTCAGA
AACTACGGAGTGGCCGTGTCTGCTGACAATGAGATATACGTAACCGATGT
GAACAATGAGCGAATCCAGGTCTTCAGCATAAATGGGGTCTTTCTCCGCC
TGTTCCCAGCGCTAGTTCCGGGTGGACATGAGCAAAAGCTAATGCACCCT
CACGATGTTGCCCTTGACGCAAATGGTTTCCTATGGGTAGTGGGTAATGT
CAAGGTTGGGTTCCTTCATGAAGTACATGTAGTGCAGTACAACCGAGATG
GCCAGCCTATGACAACACTTAAGTTAAACTCTTTTGCTAGGTTCCCAACC
ATTGCCGTAGACGCACCAAATAACAAAATCGTTGTTGCTGTGTCACATGG
AATTTTTGAGTTTTCAGACATCGGTTTGTCAGGCAGTTTCGAAATCGGGA
AGGGTGAAGCAATCGGATACATCACACACGGAAATGATGGGAGTATCCTT
GTTACCGACCGTTCTTCCAATAGTGTCCGGGTGTACAATCGCACTGGGAA
GCTCCTACTCAAGTTCGGAGAAGGGGGGACCGGTGAAGGGCAATTGCATT
TCCCCCAAGGCATCTGTACAGACAAATTTGGTCACGTAATGGTGGCGAAC
TGGGGGAACGATCGTGTAGACATGTTCACAAGTCGTGGGGAGTTTGTCCG
CACCGTCGTGAATACTCCCTCTCCTTTGGCTATTGCCATAGGACCAGCTG
GGCAGCTGGTGGTGACTGACTCATTGGCTGACACTGTGATCATTTTTCGT
CTGCATGGTTTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:9864739..9867548 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL87142_cuf1 |
| Biotype | protein_coding |
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