transcript:BL87090_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87090_cuf0
Unique Nametranscript:BL87090_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87090_cuf0

>transcript:BL87090_cuf0-protein ID=transcript:BL87090_cuf0-protein|Name=transcript:BL87090_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=421bp
YKMANRLTVTDAHSELFMEGNGLRTYRQKMQAGKRQHDWEMRLLDKERRI
AWNSDRVEQNRLLSRLESINKRIQEINKRNSKGQNLQTKTTLLLDNDKHL
QGKFTREGHKMSSQKLDKNENNTFISRGPFLSTLSGDMRQPDVFQDSRGV
VKNQGTLGVDTKSREPTVTGSHLPSVSQKTRSKDHRVSSNCSLDNSQLAN
SNKLPSIKKSNHKGSSEDAKEEVKNSVKPRLVRRRSMDPKLLASLLNVDE
SSVEKQNQVFQRVRLNSDAALRGNSEDPQEKSEEIGKEKKLQRRTSIASM
HMPSDLLKVGFPEWRSNDKDFPASTSFVPRARRSSLPSVSTTTHGKFTKL
CLTATRRMSIGSTKSRTSSLDKLENVSEVSEEHSDRSEREETMKKLMQNV
MSIDYTSSWPLTLRKKAQWGQ
Run BLAST on NCBI

mRNA from alignment at Sc0000162:24314..26595+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87090_cuf0 ID=transcript:BL87090_cuf0|Name=transcript:BL87090_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2282bp|location=Sequence derived from alignment at Sc0000162:24314..26595+ (Branchiostoma lanceolatum)
TATAAAATGGCCAACAGGCTCACAGTCACAGATGCACACTCGGAGCTATT
CATGGAGGGGAACGGGCTGAGAACTTACCGTCAAAAGATGCAGGCAGGGA
AACGACAGCACGACTGGGAAATGAGACTGTTGGATAAAGAAAGACGGATC
GCCTGGAACTCTGACAGGTAAGGAGTTTGTAGTTAGGCCTAGGGGGAGTG
AGCTGTGTTTTCGAATCCCGACAGACCCTAGTAAAATTCCCGCCGACTCT
ACACTATTTGTGGTCGGCCGCTGGCAAGGCAAGGCACAGAACAGACTTCC
TGTATTTCACACTGTGTTTTAACATAATTCAAGGCATTGAACACTTGATA
TACTTAAGAATGTGTCGGTCCATCCCTATACAAATCCATGGGCAGCGCAC
TTAATGTTCAGTGTATTGACATACGTATCCATATTGTATACATCTGTATA
CATCTATATACATCTGAATCTGTATCTATATACATCTGTATCTGATGCAA
ATTTACCCCAATTTTTTAGGACCCAGTAATCGCCAACACCGAATTGTTTA
AAGATTTCAACGTAGCTTTTTTTTAGTCGGACAGACAAAGTGAGACTTAA
ACCAAGTCATTCATATATTCCATGTTCCTTGTTTGGGTGATTTTAGCCCG
CCTATGTTTACTTTATCTAAACCTTGCCTTGTTCAAACGTTACAGGGTCG
AACAGAACCGGCTGTTGTCTCGTCTGGAGAGCATAAACAAGCGCATACAG
GAGATAAATAAGAGGAATTCCAAAGGACAGAATCTGCAGACGAAAACGAC
GCTCTTATTGGATAACGACAAACACCTGCAAGGAAAGTTCACACGAGAGG
GGCACAAAATGTCGTCACAGAAACTGGACAAAAACGAGAATAATACATTC
ATATCTAGAGGACCGTTCTTGTCGACCTTGTCGGGAGACATGAGACAGCC
AGACGTGTTCCAAGACTCACGCGGTGTCGTCAAAAACCAAGGAACTCTTG
GTGTTGATACCAAGAGCCGAGAACCAACCGTTACGGGAAGCCATCTTCCG
TCGGTGTCTCAAAAAACAAGATCCAAGGACCATCGCGTCTCTTCCAACTG
TAGTTTAGACAACTCACAGCTCGCTAATTCCAACAAACTACCCTCGATAA
AGAAGTCAAACCACAAAGGTTCCTCAGAAGACGCCAAAGAAGAAGTCAAG
AACTCAGTTAAACCCAGACTAGTCCGCCGAAGAAGCATGGACCCCAAACT
TCTTGCATCCCTCTTGAACGTGGACGAGTCTTCAGTTGAAAAACAGAATC
AAGTTTTCCAGAGAGTGAGACTAAACTCTGACGCGGCTCTCAGAGGAAAC
TCTGAAGATCCGCAAGAAAAATCGGAAGAAATCGGAAAGGAGAAGAAGCT
TCAGCGTAGAACGAGCATAGCGTCGATGCACATGCCGAGTGATCTGTTAA
AAGTCGGCTTCCCTGAGTGGAGATCAAACGACAAAGACTTCCCGGCGAGC
ACCAGCTTTGTCCCTCGGGCCCGGCGAAGCTCCCTACCGTCTGTGTCCAC
CACGACTCACGGCAAGTTTACGAAGCTGTGCTTAACTGCTACAAGAAGGA
TGAGCATCGGATCCACAAAATCAAGAACCTCATCGTTGGACAAACTCGAA
AACGTGAGCGAAGTAAGCGAGGAACATTCGGACCGTTCGGAACGGGAGGA
AACCATGAAGAAATTGATGCAAAACGTCATGTCCATAGACTATACTAGTA
GTTGGCCATTAACACTACGAAAGAAAGCACAATGGGGACAATAGATGACG
TGTTCACGCTGGTTATGCTAAGGTAGAATAGAATAGCACTAGTAGATGTT
TGACACGTGTAACCTTACAGTGTATAGCAGCATCAAATCGCATCAATGTC
AACGGCGTATCATGTAACATGATTTATTATAATCTTCAAAGCAGCCATAT
TATGCATGATACTTTTGAAAATGCGATCACTTCTGCACATGCATTTATAA
ATGAGAAAATTTTGAAACCCGTGAGCTTATAAGATACGCTGCATCAGTAA
CTACACTGAATAAAAAACGTTTATGTCTTCTGTACTTCTTGAATACGAGA
ATTAAAGTCCTTGTTGCTGTGACACCATGTTCTTTTGTCGCTTCAACCCG
TTTTATAACGTTTGTGGTATCTATTTTCTGGGGATCTTGATCTTTTTTGC
CCGTCTTGGTTTTTTTTTGCGCTCTCGCATTAGCTTTGCAGTCAGCAGAG
AATGCCATTCATAAAATGTACTTGCCGTGACC

Coding sequence (CDS) from alignment at Sc0000162:24314..26595+

>transcript:BL87090_cuf0 ID=transcript:BL87090_cuf0|Name=transcript:BL87090_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2532bp|location=Sequence derived from alignment at Sc0000162:24314..26595+ (Branchiostoma lanceolatum)
TATAAAATGGCCAACAGGCTCACAGTCACAGATGCACACTCGGAGCTATT
CATGGAGGGGAACGGGCTGAGAACTTACCGTCAAAAGATGCAGGCAGGGA
AACGACAGCACGACTGGGAAATGAGACTGTTGGATAAAGAAAGACGGATC
GCCTGGAACTCTGACAGGGTCGAACAGAACCGGCTGTTGTCTCGTCTGGA
GAGCATAAACAAGCGCATACAGGAGATAAATAAGAGGAATTCCAAAGGAC
AGAATCTGCAGACGAAAACGACGCTCTTATTGGATAACGACAAACACCTG
CAAGGAAAGTTCACACGAGAGGGGCACAAAATGTCGTCACAGAAACTGGA
CAAAAACGAGAATAATACATTCATATCTAGAGGACCGTTCTTGTCGACCT
TGTCGGGAGACATGAGACAGCCAGACGTGTTCCAAGACTCACGCGGTGTC
GTCAAAAACCAAGGAACTCTTGGTGTTGATACCAAGAGCCGAGAACCAAC
CGTTACGGGAAGCCATCTTCCGTCGGTGTCTCAAAAAACAAGATCCAAGG
ACCATCGCGTCTCTTCCAACTGTAGTTTAGACAACTCACAGCTCGCTAAT
TCCAACAAACTACCCTCGATAAAGAAGTCAAACCACAAAGGTTCCTCAGA
AGACGCCAAAGAAGAAGTCAAGAACTCAGTTAAACCCAGACTAGTCCGCC
GAAGAAGCATGGACCCCAAACTTCTTGCATCCCTCTTGAACGTGGACGAG
TCTTCAGTTGAAAAACAGAATCAAGTTTTCCAGAGAGTGAGACTAAACTC
TGACGCGGCTCTCAGAGGAAACTCTGAAGATCCGCAAGAAAAATCGGAAG
AAATCGGAAAGGAGAAGAAGCTTCAGCGTAGAACGAGCATAGCGTCGATG
CACATGCCGAGTGATCTGTTAAAAGTCGGCTTCCCTGAGTGGAGATCAAA
CGACAAAGACTTCCCGGCGAGCACCAGCTTTGTCCCTCGGGCCCGGCGAA
GCTCCCTACCGTCTGTGTCCACCACGACTCACGGCAAGTTTACGAAGCTG
TGCTTAACTGCTACAAGAAGGATGAGCATCGGATCCACAAAATCAAGAAC
CTCATCGTTGGACAAACTCGAAAACGTGAGCGAAGTAAGCGAGGAACATT
CGGACCGTTCGGAACGGGAGGAAACCATGAAGAAATTGATGCAAAACGTC
ATGTCCATAGACTATACTAGTAGTTGGCCATTAACACTACGAAAGAAAGC
ACAATGGGGACAATAGTATAAAATGGCCAACAGGCTCACAGTCACAGATG
CACACTCGGAGCTATTCATGGAGGGGAACGGGCTGAGAACTTACCGTCAA
AAGATGCAGGCAGGGAAACGACAGCACGACTGGGAAATGAGACTGTTGGA
TAAAGAAAGACGGATCGCCTGGAACTCTGACAGGGTCGAACAGAACCGGC
TGTTGTCTCGTCTGGAGAGCATAAACAAGCGCATACAGGAGATAAATAAG
AGGAATTCCAAAGGACAGAATCTGCAGACGAAAACGACGCTCTTATTGGA
TAACGACAAACACCTGCAAGGAAAGTTCACACGAGAGGGGCACAAAATGT
CGTCACAGAAACTGGACAAAAACGAGAATAATACATTCATATCTAGAGGA
CCGTTCTTGTCGACCTTGTCGGGAGACATGAGACAGCCAGACGTGTTCCA
AGACTCACGCGGTGTCGTCAAAAACCAAGGAACTCTTGGTGTTGATACCA
AGAGCCGAGAACCAACCGTTACGGGAAGCCATCTTCCGTCGGTGTCTCAA
AAAACAAGATCCAAGGACCATCGCGTCTCTTCCAACTGTAGTTTAGACAA
CTCACAGCTCGCTAATTCCAACAAACTACCCTCGATAAAGAAGTCAAACC
ACAAAGGTTCCTCAGAAGACGCCAAAGAAGAAGTCAAGAACTCAGTTAAA
CCCAGACTAGTCCGCCGAAGAAGCATGGACCCCAAACTTCTTGCATCCCT
CTTGAACGTGGACGAGTCTTCAGTTGAAAAACAGAATCAAGTTTTCCAGA
GAGTGAGACTAAACTCTGACGCGGCTCTCAGAGGAAACTCTGAAGATCCG
CAAGAAAAATCGGAAGAAATCGGAAAGGAGAAGAAGCTTCAGCGTAGAAC
GAGCATAGCGTCGATGCACATGCCGAGTGATCTGTTAAAAGTCGGCTTCC
CTGAGTGGAGATCAAACGACAAAGACTTCCCGGCGAGCACCAGCTTTGTC
CCTCGGGCCCGGCGAAGCTCCCTACCGTCTGTGTCCACCACGACTCACGG
CAAGTTTACGAAGCTGTGCTTAACTGCTACAAGAAGGATGAGCATCGGAT
CCACAAAATCAAGAACCTCATCGTTGGACAAACTCGAAAACGTGAGCGAA
GTAAGCGAGGAACATTCGGACCGTTCGGAACGGGAGGAAACCATGAAGAA
ATTGATGCAAAACGTCATGTCCATAGACTATACTAGTAGTTGGCCATTAA
CACTACGAAAGAAAGCACAATGGGGACAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87090gene:BL87090Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87090_cuf0-E1BL87090_cuf0-E1-1564476830-357858Branchiostoma lanceolatumexon
BL87090_cuf0-E2BL87090_cuf0-E2-1564476830-357861Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87090_cuf0transcript:BL87090_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000162genomeSc0000162:24314..26595 +
Properties
Property NameValue
Transcript idBL87090_cuf0
Biotypeprotein_coding