transcript:BL86960_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86960_cuf0
Unique Nametranscript:BL86960_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86960_cuf0

>transcript:BL86960_cuf0-protein ID=transcript:BL86960_cuf0-protein|Name=transcript:BL86960_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=103bp
MEIRCSFVQLFSIEDFHENALAVPEKAARGPKPTPLLYYITGYLPPKNQD
HSTSKSKDTKIEVLLQYQGHIPGGPKSTLTFGFTTPTQIPNIIVIHPGVL
ELC
Run BLAST on NCBI

mRNA from alignment at Sc0000087:1187571..1188066+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86960_cuf0 ID=transcript:BL86960_cuf0|Name=transcript:BL86960_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=496bp|location=Sequence derived from alignment at Sc0000087:1187571..1188066+ (Branchiostoma lanceolatum)
TTACATGTATTTGAGTCTGATAATGGAAAACACTGCAAATATAGATTTTC
CTCATTAGCTATGCAAATTAAGTCCCAATTAGCATAATTTGCACTTCATT
GTGTATATCTCTATCTAAGCTACCTGCATACTAAATATCATGGAAATCCG
TTGTTCCTTTGTTCAGTTATTCTCCATAGAAGATTTTCACGAAAACGCCC
TTGCAGTTCCAGAGAAAGCTGCTAGGGGGCCCAAACCTACACCACTTCTT
TATTACATCACAGGCTATCTGCCACCCAAAAATCAAGACCACAGCACGTC
CAAGTCAAAAGATACAAAAATTGAAGTTCTGCTGCAGTACCAAGGTCACA
TACCAGGGGGCCCAAAATCGACCCTGACCTTCGGCTTCACAACACCCACC
CAGATACCAAATATCATCGTAATCCATCCAGGGGTTCTTGAGTTATGCTG
ACTACAGTAGTCCGGAAACACAAACACACACACACACAGACACACC

Coding sequence (CDS) from alignment at Sc0000087:1187571..1188066+

>transcript:BL86960_cuf0 ID=transcript:BL86960_cuf0|Name=transcript:BL86960_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=312bp|location=Sequence derived from alignment at Sc0000087:1187571..1188066+ (Branchiostoma lanceolatum)
ATGGAAATCCGTTGTTCCTTTGTTCAGTTATTCTCCATAGAAGATTTTCA
CGAAAACGCCCTTGCAGTTCCAGAGAAAGCTGCTAGGGGGCCCAAACCTA
CACCACTTCTTTATTACATCACAGGCTATCTGCCACCCAAAAATCAAGAC
CACAGCACGTCCAAGTCAAAAGATACAAAAATTGAAGTTCTGCTGCAGTA
CCAAGGTCACATACCAGGGGGCCCAAAATCGACCCTGACCTTCGGCTTCA
CAACACCCACCCAGATACCAAATATCATCGTAATCCATCCAGGGGTTCTT
GAGTTATGCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86960gene:BL86960Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86960_cuf0-E1BL86960_cuf0-E1-1564476830-286362Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86960_cuf0transcript:BL86960_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000087genomeSc0000087:1187571..1188066 +
Properties
Property NameValue
Transcript idBL86960_cuf0
Biotypeprotein_coding