transcript:BL86941_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86941_cuf0
Unique Nametranscript:BL86941_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86941_cuf0

>transcript:BL86941_cuf0-protein ID=transcript:BL86941_cuf0-protein|Name=transcript:BL86941_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=119bp
MFCIASLRRMEEIWTSTQFTAQKVMGTSMTNLLYIDNCNSHITSLVSNFT
QQFTEKCIVFLNSRIFLLPGMIINHIRLRLISKNTVELKLATIHNGSLAE
IGASVTISHVYKTCTYFEA
Run BLAST on NCBI

mRNA from alignment at Sc0000360:214359..215121+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86941_cuf0 ID=transcript:BL86941_cuf0|Name=transcript:BL86941_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=763bp|location=Sequence derived from alignment at Sc0000360:214359..215121+ (Branchiostoma lanceolatum)
GCGATAGACACCTGTGGTGCATCGCTGACGGCTGCTGGTACTGTGTACAA
CAGCTGGGCCGGCCGTGGGTCAACAAGGCGGACACAAGGCGTGCTGAAGG
ACCTCAAGTGGCAATCGCTCTCTTTGCTATGATCTTGGATTCATCAACAC
CACCTTTGAATATTACAAAATCTTGTAAAACAATCTGAGATACGCAAGAT
CATTTAACATACGTTTTCGAATCCAACTGCGATACAGTGTGTGAATGTTT
TGCATTGCATCACTACGCCGCATGGAGGAGATTTGGACGAGTACACAGTT
TACGGCGCAGAAAGTCATGGGAACGAGTATGACAAACCTATTGTACATAG
ACAATTGCAATAGTCATATAACCTCCCTAGTTTCGAATTTCACTCAACAA
TTCACAGAGAAATGTATCGTATTTCTGAATTCCCGGATTTTTCTTTTGCC
CGGTATGATCATAAACCACATCAGATTAAGACTTATCTCAAAGAACACAG
TCGAACTAAAACTAGCCACAATCCACAATGGCTCTTTGGCGGAAATAGGA
GCAAGCGTAACCATCAGCCATGTTTATAAAACCTGTACTTATTTTGAAGC
ATGATATTTGTTAAGATTAACTTTGATTAAAACAGACAAACCATATGCTA
GCAAATTAAAAATCTGCGTTCTAGTAAAAGTTTCTGGATGTCAAATGTGA
TTGGACAAAACATATGGGCACAAGGCATGACTTGTCTTTTACGACGTGCG
AAATTCTGTTTCT

Coding sequence (CDS) from alignment at Sc0000360:214359..215121+

>transcript:BL86941_cuf0 ID=transcript:BL86941_cuf0|Name=transcript:BL86941_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=360bp|location=Sequence derived from alignment at Sc0000360:214359..215121+ (Branchiostoma lanceolatum)
ATGTTTTGCATTGCATCACTACGCCGCATGGAGGAGATTTGGACGAGTAC
ACAGTTTACGGCGCAGAAAGTCATGGGAACGAGTATGACAAACCTATTGT
ACATAGACAATTGCAATAGTCATATAACCTCCCTAGTTTCGAATTTCACT
CAACAATTCACAGAGAAATGTATCGTATTTCTGAATTCCCGGATTTTTCT
TTTGCCCGGTATGATCATAAACCACATCAGATTAAGACTTATCTCAAAGA
ACACAGTCGAACTAAAACTAGCCACAATCCACAATGGCTCTTTGGCGGAA
ATAGGAGCAAGCGTAACCATCAGCCATGTTTATAAAACCTGTACTTATTT
TGAAGCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86941gene:BL86941Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86941_cuf0-E1BL86941_cuf0-E1-1564476830-448155Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86941_cuf0transcript:BL86941_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000360genomeSc0000360:214359..215121 +
Properties
Property NameValue
Transcript idBL86941_cuf0
Biotypeprotein_coding