transcript:BL86207_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86207_cuf0
Unique Nametranscript:BL86207_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86207_cuf0

>transcript:BL86207_cuf0-protein ID=transcript:BL86207_cuf0-protein|Name=transcript:BL86207_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=149bp
QNFNIATNFKPHSTLRQKLVHPKDRPEKGIKANVIYKLKCEEPNCNNMYI
GETSRPLKERYKEHCRKSANRYSSAIYHHLKHNQGHSFNFESTDILDREE
RWFERGIREAIYERMYNPALNRKGGLRVQLSGTWDNALPTTPHPRTSNI
Run BLAST on NCBI

mRNA from alignment at Sc0000811:16586..17267+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86207_cuf0 ID=transcript:BL86207_cuf0|Name=transcript:BL86207_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=682bp|location=Sequence derived from alignment at Sc0000811:16586..17267+ (Branchiostoma lanceolatum)
CCAAAACTTCAACATTGCCACTAACTTCAAACCTCACTCAACTCTCAGGC
AGAAACTAGTCCATCCAAAAGACAGGCCTGAAAAAGGCATCAAAGCCAAT
GTCATCTACAAACTGAAATGTGAGGAACCGAACTGCAATAACATGTACAT
TGGGGAGACAAGTCGACCACTAAAAGAAAGGTACAAAGAACACTGCAGAA
AGAGCGCTAACCGCTACTCCTCTGCCATTTACCACCATCTAAAACACAAC
CAGGGACACTCATTCAATTTCGAATCCACGGACATCCTAGATCGTGAAGA
ACGCTGGTTCGAACGGGGAATTAGAGAAGCAATATATGAGAGGATGTACA
ACCCCGCCCTCAACAGGAAAGGGGGTCTACGCGTTCAACTTTCAGGCACC
TGGGATAATGCACTGCCCACCACCCCCCACCCCCGGACAAGCAACATTTA
GTTACTGTACTAGAACAACAGTAGCTAATTGAACTATTGGCATAAACTTT
GTCTTGAATTAATCTTCTTTTTAAAGACTACTTCAAGACATCCTAAATTG
TCTTTACCTCATTACCATATCTATTCAGAGTTTTGGTATAAAACCTGGTG
TTCTCAGTCCTATCGTTAGTCACTGACGAAAGACAGTGGATACTGTCTGA
AACGTCTGACTGTTTCAAAATCTTATCCAGTT

Coding sequence (CDS) from alignment at Sc0000811:16586..17267+

>transcript:BL86207_cuf0 ID=transcript:BL86207_cuf0|Name=transcript:BL86207_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=450bp|location=Sequence derived from alignment at Sc0000811:16586..17267+ (Branchiostoma lanceolatum)
CAAAACTTCAACATTGCCACTAACTTCAAACCTCACTCAACTCTCAGGCA
GAAACTAGTCCATCCAAAAGACAGGCCTGAAAAAGGCATCAAAGCCAATG
TCATCTACAAACTGAAATGTGAGGAACCGAACTGCAATAACATGTACATT
GGGGAGACAAGTCGACCACTAAAAGAAAGGTACAAAGAACACTGCAGAAA
GAGCGCTAACCGCTACTCCTCTGCCATTTACCACCATCTAAAACACAACC
AGGGACACTCATTCAATTTCGAATCCACGGACATCCTAGATCGTGAAGAA
CGCTGGTTCGAACGGGGAATTAGAGAAGCAATATATGAGAGGATGTACAA
CCCCGCCCTCAACAGGAAAGGGGGTCTACGCGTTCAACTTTCAGGCACCT
GGGATAATGCACTGCCCACCACCCCCCACCCCCGGACAAGCAACATTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86207gene:BL86207Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86207_cuf0-E1BL86207_cuf0-E1-1564476830-499584Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86207_cuf0transcript:BL86207_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000811genomeSc0000811:16586..17267 +
Properties
Property NameValue
Transcript idBL86207_cuf0
Biotypeprotein_coding