|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86142_cuf2 >transcript:BL86142_cuf2-protein ID=transcript:BL86142_cuf2-protein|Name=transcript:BL86142_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=210bp
MIMEYFDESLVLLKRLLCWDLVDILYLGLQRSRSYSYKTTKISTETVEKH
RQWSKVDYNMYDYFNESLWKMIQDEVQRGFHSEVRHFQSVLQEVKEYCSF
LPKGYIKSVKPVPRKMIPASQWNDAISLDELFCLELRMGWDDWEYVIKNS
HLGQLRKDLPDFDISFVQVPRPTNVMSRMLRKKFHVKGPKLICANRSTYC
TLDNQALNKL Run BLAST on NCBI mRNA from alignment at Sc0000030:1537995..1545689- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86142_cuf2 ID=transcript:BL86142_cuf2|Name=transcript:BL86142_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=7695bp|location=Sequence derived from alignment at Sc0000030:1537995..1545689- (Branchiostoma lanceolatum)
TTCTGTTCCGCCATTTCTCCACAGCTATGAAAGTTGTCCGGTGGAGGACA
GCTGGTGTTGTGACCTTGCTGTTAGTCTGTTTGTTCATGTTCAAGTTCGT
CTGTCGGCCCGTCCCGACCTGCCACCAGTCGCCATGGAAACACAGCGGTG
ACCAGAGAGTTACAACCGGAAGTGAAGGATCCAGGTAAACGAATTATGTT
ACGTAAAAATATGTAACGAAAAGCATTATTTTGCCTGTCGTTGTATTAAC
GTTACCCTAGCTATAGGGTTCTAGAAATAATGTGTGTACGTATTCAGTTA
TGGCCTTTTTCAAGATAACCATTCATTTTTTAAACGAATCTTTCGTAAGC
GTAGAAACGCTGATACCTCGATGATTTGATCTAATACACTAAAAGATACA
CCTACAAATCTTTGGGGCTGTTTTGTATTTTATTGATACGTCAGTTTGAT
TCCCTTTGATATCATTTTGATGATATGTTAAGTTACAGCAGGTGGGTGAC
GTAGTTTGAAAGCAAGGAAATGATATTATATTTTTCTCATGCAGAGTTCG
CGTCTCTAGCGGTGCTTGTAGAGCTAAGCTGAAGAGCGTGGTGTTTTTGA
AGGTCCACAAAGCTGCATCCACAACCGTGGCGTCTATCTTCCAAAGGTTC
GGCTGGAAAAACAACCTCACCTTCGTTCTTCCTACACACTATAGGTAAGC
ACACATACATTGCCGTATTACTGAATCTATTACAGAGAGGAAAAACAACT
CTTCGCTCTCTTTGGGTGAAGTAACGACAAGACAAATGGGAATTGGTGAA
AACATATAACTGTATTAGCATATTTTATCATCTTCCAATGTGGTCACCAA
ATCCTGAACACCAAACATGTATACTTTCTGTCACTGACACGTACAGTGTT
GCACAAAGATGTACCCATCCCATGAATCTGAAAGTGTATGATACTAGAAT
TCATCATCTCCATTTAGGAAAACGGAAAGGGGAAAAATGAAAATTTCCTG
AAATGTAGTTAAGTGAATGAATGTAATGCTGAAGCAACAGTTTACCCTTT
GTGGAAACAGGTTCTCTAAAACCACCGCAAATAGACCAAAATGGAGTGGA
GGAAAATGAAAAGTAATTTTCTAGAAATGTTTAGACTTGAACAGCACATG
TAGTCGTGATAAAAACGAGCTAAACTTTCTACTGAAACAGAATCAACATC
ATTTTTAACACCATCCAAGACACAAGTGGAAGTTCCTTCTCAATTCTCAA
TCCTGTCAGTTTAAGTCTAAAAAATGTCCTTGGTGCCAAAGAATACACAT
GTTCACAATGGTTAAAAAATTACAATCTCGAATCATCACAGAATGGCAGT
TAATTAGATGAGGTAAACGCACAAACTCACAACTGTCGACTCAGTACCAG
AAATGTATAATATAACATAGAATCAGTCCTGTGCACCCAGTACTTGAGGG
GCTTCTTTCAGAGCCACTTTGCACATCTCATCGATGTACCATTTCCTCAG
GTACGTTGCGCGATAATCCTCATCTTTCAACAACTTTGCAAGGGTGTCTT
TGATGTCTTTGAGATACCTTAAGCTCAGTCCTTCTGTCTGAGGTAAGTCG
TAAGACTTGCACACGGGCACTTGCGCTGCCAGGTTCTTGATAACCGTGTA
GTCCAGGACGTGTGGCGCGGTGGCGGCGAGCTTTGATCTGAGTGAGTCGG
CGTAGGCTTGAAGTTCATCCGCGTACTCTCTCTTAGTGATGAGGTCATCC
CACAGATCGTCGATCGATGACATCATCTCTTCATACTGCGGGTTGTCTGC
ATCCTTGTGACGGGGAGATGGGTTGGTTGTTGGAAGATCCACTCCTCCTC
CCTGTGTAGAAGATGCCGTTTTAGGTCTGTCTGTGTCCACGTCGCTGTCA
GCGTTGACCGGCAAGTCCGTCTCTTCATTCTCGGGCAGTGACATCACATC
CTCCGAAACCTCTGGCTTCTGTTGCACAGCGGTCTTATTGGAGGGCTTGG
CTGGGTCTGAAATATATAGAATAGAGATAAAGTTCACATTGTAGTGGTTG
CTCTTTGCAGTGTTTCATTCTTCAGTTTATCATTAATTTGAGAGGACGAT
TCTATTTACCTGCGAGGAAGATGCAAAGAATTATCAAAGGCGTTGCCAAA
TAGTCTAGTTAACCTTCTTCCTGCTACCTAACTCCCACACTGGCCCTGAA
ACCTATAGAGAGTTGGGTGCCAAACGGCTGCTTCAGTGTGCTAAAGGTTA
ACATCTACCGAAATACGAACAGATATCTCTTACCTTGATCCTGTTCGGAG
TTACTGCCGCTCACGGGGCTGTCAATATCAGCGGGCATTTGTGCGGCCTC
CACGTCCGTGGATACTGCCGTCACTTCCTTCAGCTCAGCTGAATATTCCG
GGGTCTCTGGCCCTACCGTCATAACAGTCTTCTCTGAGGGCCTGGTCGGG
TCTGAATAGAGAGAAAGTTCACTTTTCAGTGACTGTATTTCACAATTTTT
TATTCTGGATTATTATACTTAACTTCAGATTTGATGGGTAATAGCTTGGT
GTTGTATTTAACTATGAGAGAATGATTATAAGTTCTATGTGAAAATTAAG
GAAGTCCATGCACAGAAAGAGCAACAGATCTATATGACGCTTCTTACCTT
GACCCCGTCCGGAGTCAATGTCACCCGTTGGGCCGTCAACTGCAGAGGGC
ACTTGTGGGACCTCCACGTCCTTGTCGTGGGAGTGGCGCTCTGAGCCCGC
CTTGACATCACCCTCACCATGGCCACTTGTACCGGCCTGGTCTGGTGTGT
GGCATGAGGCAGGTGGGCTGGACGGCGGGGTTGATGTTGATGCCGGCTCT
GACTTGACGTGAGTGATGTCGCCGGCTGCGGACGGTGGTGAGTTGTCCGT
GCGGCGGCTGCTATCTGACGTTCCCGTCTCTCCTTCCTGGGAAACCGAGG
AACGGCGCTCATGGCTTGGCTCGACTCCTCGCTTGGCAGAGGACTTGTCT
TGTGCTACTGTCGTAGTAGACTCACTGGGAGGCTTTGCAGGGCCTGAATG
AAATGAAACAATACGCTCATACTGTGTGTGTTTTTTGTCTTCATTTTACA
TGTAAGGCCCACTTTACAGTGATTTCAAAAACACTTCCATGCGTTTTTAA
ACACTTCCAGGAACTTTTTTTTTAAATAGTACAGTAAACATTTACAGAAT
GAACAGCAGACATCTCTTACCTTGACCCCGTCCGGTGTCACTGTCAGAAG
TGGACACTTGTGAGACCTCCACGTCATTCTCTCGGGAGTGGCGCTCTGGG
CCCGCCTCAACATCTCCCTCACCACGGCCACTTGTACCGGCCTTGCCTGG
CGTGTGGAACGAGGCAGGTGGGCTGGATGCCAGGCCTGTTGTCGACGACG
GTTCCGACTCAACGACTGCAGTGTCGCCGGCCGCGGACGGTGTTGCTTTC
GTAGCAGTCTCCTTACCAGGCTTGGCAGGGACTGAATAAAATGACAAAGT
ATATATATAACGTTACGTGTACTGTGTGTTTTACGTTAGTCTTTGAACGA
AAAACAAACTGTTCTATAGAAGACGGAAGCTATGATGCTTCGGCGCGTCG
AACGCCGGTTCGTTCGAACCGTTCATTTGACACACACTTTGCCATTATTT
GCAGAGTACGTAATGTCATTTTCAAGTTTGATAAGACGAAATTTAAACAA
TAAAGAAATACTATTCCACGTATATCTACACTTGTTATAGTTCTCCATGA
AGACGTCATTTTCATCTGTCTCCCTGTCTAACAAGCTCCTCGATTTCCTC
AAGGACGTTACAACATACAAACTCGATCGAGACTGCTTATGCTTGGGTCA
CATTTCCGATCCGGGGCCCGGCCGGGCAGTCTTTGGGAGCGAAAAGTATG
ATATAAAAGACAACAGAAACACAAAATGTACACAAAATTATCTAAGAGCA
TAGCTTCTGCAAATTAATTTTCACACACTTTGATTTTTCGTTTCCGCAAA
CAGCCCGGCCGGGCCCCGGTTAGGAAATGTGAACCTAGCATAAGAAACAA
AAGAAGTCCCTTACCCTGTGTAGAACCAATTTTCACCCCCTGGCCATCCA
CAGTGATCGTGACTTGCAGGAAAACCTCTTCCCTCTGACGACCACCTTTA
TCGATTCTCTCTATGGCGTACCACCATCGGTTCGGTAAGCCGTCCACCGA
CGCTAGTGCAGCTGCAACATCGATAGGAAGCTCGGCGATGGTCGCGTCTT
TGCACCGCTTCGCCTTCCTCAGTTTCAGGATCAAGGGATCTGTCGGCGTC
CAATGGGAGAATTCGGCAGCATGCTCCCAGACTAGACCATCTGATTTCTT
CTTCTTTGTCTGCTGCTTTTCCTTACCGTGACGAAGAGTGACTACATACT
TGCCTTGGCTGTGGCGACCAACTTTCCCTTCATGAACAGTGACGTTCAGT
TTGGGTTCACCGGTCCATCTCTTACCGCCAGGCCTGAGCAATGACAGGGT
ATGTGCTACTGTGAGGAACGCTGACGCGGTCCAGTCCAGCACACCCATCT
TATCAAACGGGATACGCAAAATAGGCTTTACACAACGAGGAGCTTGAGAA
ATGCACGTGCGGCATGCTCAATAGTGTTGTTGTGTTTGGTTGCTGTTCCA
CAGCGACGCTACAACAATGTAAATACTGTTCTAGAACGCTTTGTGATAAT
CGCGAAAACCCGCGTGTACTGGAACAATTATAATCATTTACTCTTGACAT
TGATGACGTTTCGGCTTAGATATTTATGAGGTTTTGGTACCGATGATGAG
ACAATAATGTCTTTGAATACTGTCTCAATGACGGCAGACACGAATATCTA
GCTTGTAGACGTCACTGTATGTTGTATTTTTTTTCTTTTGCGCAAATTAT
CAATAAGACCGAAAATACCCAAAAAGAAAGATTCCAATTTCATACATAAG
AGAATCATTAGAGCATTGAAAACGGGGAGTTCTATAGAAAAAAGACTTCT
GTAATTCCATGTTTATTACAATTTTACCATTGAAAAATATGTCAAGTCGA
TATTGTATGCCCCAGTCAGAGCCTAACCTGCAGTACCGGTACTAGCCGCG
CTGCAAGAAGACTACACGTCAAAATGCAGACATTTGCTGTTTTCGGGAAT
CGAGAAATTGCACAAGGCTCCTAAAAGCGTTTGAAAACATGTGTCTATTT
TGATACCTTATTCAACTCTTCAACACCTAGTACCTGAAAGCAAGTCTAGA
ATAGTTTCCACAAAGGAAAACATCGTAGTAGCAAGCGCTATCTTAACGTG
ATACTAGTAGTTGTTAAATGTTCGTGGACAGTTCACTTACACGGATTCCT
TTCCAAATACAGGGACTACATAGGCTGGCCGCATCACATAAGGCCACAAG
ATATCCTTCCGTCACCTACAGGTAATTACAACATCCTCTGTGATCACGTG
GTTTATGACGACAGGATATTACGCAGATTGATGCCTGACGACACTCTTTC
TGTCGCCATCTTGAGAGAGCCCCTCAGGTAAAAATATTTCAGCCAATAAA
AATAACCTTGAACAGTTTCATTTTCTGTGTCCCTGGATTACAATGTCCTT
TATACACAAGCAAACATGTTCAGTTCCGACTTTTCGGTGCCGTCGGTCAC
CTTCCTCAGTTCTGTTAAACACTACAAGTGGGGCCGCATCTGTTAGCAGC
GACACCTACTTGTAATACTTAACATAACCAGTCAGAATTGCCCCAAGGAA
GGTAACAGACGGTCAATCGGTATTTGATAAAACACTCGGTTGTGTACAAA
TGACTTTGCTATCCAATGTAGCAACTTGAATACATTTCTTCGTAAACTCG
AATACGTGCCAGTTTCTTCATAATGTAGGTCCAGCAAATAGAATATCGAA
AAACATATATCTAAGTATACAGGTTCTGCGAAATTCTGGAAGCAATGGGG
TAATGGAAATACATGTATATCTAAAACCTAAACGAAATGTCGTAATTGTT
TACAAGGAAAAGTCCGATAGTGTTTAGATGGACATAAAAGTAGCCATGAT
TGTTTGATAGTAAGAACATGTAGCAGCAGTTATTTGCATATAGGTCATTA
AATGTTGACCGTCACAGTATCAGGAAAAGTTAATAAAGATATTATTTTTT
CCGTTTCTATTTAGCCATCTCAAGTCGGTCTTCCATTGGTGGCACTTAGA
ACAAAAATACAATATCAGCTCCCATTCCGGAAGTGACGTCATCTCCAGTT
TCCTTGAAAACCCCGTGTTCTATGAGACGAGATTTTCNGGTGGCACTTAG
AACAAAAATACAATATCAGCTCCCATTCCGGAAGTGACGTCATCTCCAGT
TTCCTTGACAACCCCGTGTTCTATGAGACGAGATTTTCGTCCAACGTCGA
GAACCTCCGTCCATTCGTGTACACCCGCAACTTTCAGTCCTACGACTTCG
GATTCCCAATTCATTTATCAGATCATGAACAAGTCGTCAAAGAGTTTCTA
GAGACGGTGAAGACTCAGTTTCATCTTGTGATGATCATGGAATATTTTGA
CGAATCGTTGGTCCTACTGAAGCGATTGCTTTGCTGGGACCTTGTGGACA
TTTTGTATTTAGGACTCCAAAGATCTAGGTCATATTCGTACAAAACCACA
AAGATCTCAACAGAAACTGTGGAAAAGCACCGACAATGGAGTAAAGTGGA
CTACAATATGTACGATTATTTTAACGAATCACTTTGGAAAATGATCCAGG
ATGAAGTACAACGAGGCTTCCATTCAGAAGTTCGTCATTTTCAAAGTGTG
TTGCAAGAAGTTAAAGAGTATTGTTCATTCTTACCAAAGGGATATATAAA
GAGTGTAAAGCCCGTTCCAAGGAAAATGATTCCAGCATCTCAATGGAATG
ATGCGATAAGTTTGGACGAACTTTTCTGTTTGGAGTTGAGAATGGGCTGG
GATGACTGGGAGTATGTGATAAAGAACTCTCATCTTGGACAGTTAAGAAA
AGATTTACCCGACTTCGATATAAGTTTCGTGCAAGTCCCTCGACCGACTA
ACGTTATGTCAAGAATGTTACGTAAGAAATTTCACGTCAAGGGTCCAAAG
TTGATATGTGCCAACCGTTCTACATACTGTACATTAGATAATCAAGCACT
GAATAAACTATGAAAGATTCAATCACAACTAGAGTTCCTCGAACACATTA
TCTTCGCCAAATAATCAAGGCTTATTATGGATAGTAATTCATATTTACAT
GCTTTGATATCCCCCCTGAAAATTTGATCATACACCATGTGCTGTTTGTA
AGTTTTGAGGGGGGGAGATAGGGTTAAGAATCATTTGCTGGTACAGGACT
AGTGTACAATGTAAGTGTCTTGTCTGCTGATGTATGTTAAAACTGGTCAT
GAAAAAAAATGAGTACAGTATGTTGAAATTATGGGCCCTCAAAGGTTTGA
AATTGCAGTGTCGTAAGTTGAATGTGACGATGAAATGGTGCAGTCAATAT
ATATGAATGAGAATAGAATAAATCTTTATTCCATGTCATACACATTTTGA
AAGACATAGTAAATGTGACTTTACCGTACCTAGCAGTGGTGCAGTTTTGG
AGCAATGTACTTTCCAAGCAGAGCCGTGTTTTTGACGTGTTTTTATGTGT
TTTGTCGGGCTTTCTATTTCGTCCCCTTTTCGTTATGTCGCCAAC Coding sequence (CDS) from alignment at Sc0000030:1537995..1545689- >transcript:BL86142_cuf2 ID=transcript:BL86142_cuf2|Name=transcript:BL86142_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=633bp|location=Sequence derived from alignment at Sc0000030:1537995..1545689- (Branchiostoma lanceolatum)
ATGATCATGGAATATTTTGACGAATCGTTGGTCCTACTGAAGCGATTGCT
TTGCTGGGACCTTGTGGACATTTTGTATTTAGGACTCCAAAGATCTAGGT
CATATTCGTACAAAACCACAAAGATCTCAACAGAAACTGTGGAAAAGCAC
CGACAATGGAGTAAAGTGGACTACAATATGTACGATTATTTTAACGAATC
ACTTTGGAAAATGATCCAGGATGAAGTACAACGAGGCTTCCATTCAGAAG
TTCGTCATTTTCAAAGTGTGTTGCAAGAAGTTAAAGAGTATTGTTCATTC
TTACCAAAGGGATATATAAAGAGTGTAAAGCCCGTTCCAAGGAAAATGAT
TCCAGCATCTCAATGGAATGATGCGATAAGTTTGGACGAACTTTTCTGTT
TGGAGTTGAGAATGGGCTGGGATGACTGGGAGTATGTGATAAAGAACTCT
CATCTTGGACAGTTAAGAAAAGATTTACCCGACTTCGATATAAGTTTCGT
GCAAGTCCCTCGACCGACTAACGTTATGTCAAGAATGTTACGTAAGAAAT
TTCACGTCAAGGGTCCAAAGTTGATATGTGCCAACCGTTCTACATACTGT
ACATTAGATAATCAAGCACTGAATAAACTATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000030 | genome | Sc0000030:1537995..1545689 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86142_cuf2 |
| Biotype | protein_coding |
|
