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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86127_cuf0 >transcript:BL86127_cuf0-protein ID=transcript:BL86127_cuf0-protein|Name=transcript:BL86127_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=810bp
QTQNKRKTKKNWFTETCAAARRNLYNLGKLLSKNPRHPFIRGQYFKRKKE
YIRLIRKTKKDHKDNILQQLDSHSANNPSAFWDLIKLFKSNDHNALQETI
DKQALHTHFENLYGKTFEFNSDKSETEIDNTLHCQIKTELLKLESDLETY
NPLDTGINQNEIRLAISKLKNSKASGNDLILNEMLKSAAHILINPLAKLF
NLILSSGHFPQKWCESHIVPIHKGGSKDDPNNYRGISVTSCLAKLFTTIL
NTRLTNYLDEHSIISPNQSGFRKNFRTSDNLFVIDSLISKHTNTNKRLYA
CFVDFRKAFDCVWREGLRYKLLSSGIGGKFYSLLTSMYSNPKTCVKTSTG
LTPLFTTDRGVKQGCNLSPTLFNLFINDLVKELDNSDCEPPTLHNLLVPC
LLYADDVVIFSESEKGLQRALDRLNMFCTKWKLQVNMKKTKVVIFNKSGR
SVKNVKFSFGSDTIEITNSYCYLGLLLSSSGTFSLAKKQLSLKARKALFS
LKPLFRSPLSPKALLRIFDVCVKSIMLYGSEVWGKDHLNDRCPIETMQNR
FCKNILGVHRNSSNIASKAELGVFPVDLDVSIRIVKYWLRLRQLDPLTHP
LQVDALLYQQSSQVNSNKKNWLQHVKDVLDNSGYSFIWNANNLDLDIQHI
CTLLRKRLTDIYIQSFLYKLSIDDSKLRFYRNVKTEYSMEKYLSNKDFEQ
RSAVCKIRISAHPLEIEKGRYKKLPAHERMCKFCTMNAVENEIHFLCQCP
LYEAERNDLYKTASVNSPSFHHLNSLQKSISLLKSTNPLTMKNVGLFIFH
CLQKRSQTQP Run BLAST on NCBI mRNA from alignment at Sc0000296:17868..20431+ Legend: CDSpolypeptideexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86127_cuf0 ID=transcript:BL86127_cuf0|Name=transcript:BL86127_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2564bp|location=Sequence derived from alignment at Sc0000296:17868..20431+ (Branchiostoma lanceolatum)
CAAACTCAAAACAAACGCAAAACTAAGAAAAACTGGTTCACAGAGACGTG
TGCAGCAGCCAGACGAAATTTATATAATCTGGGCAAATTGCTTTCAAAAA
ATCCACGGCACCCCTTTATCAGGGGCCAGTATTTTAAAAGGAAGAAAGAA
TATATTAGACTGATTCGGAAAACGAAAAAAGATCACAAAGACAATATTCT
CCAACAACTTGACTCTCATTCGGCCAACAACCCGTCAGCGTTTTGGGATC
TAATTAAACTGTTTAAATCAAATGATCACAACGCCTTACAAGAAACAATT
GACAAACAAGCCCTTCACACGCACTTTGAAAATTTGTATGGAAAAACCTT
CGAATTCAACTCTGACAAGTCCGAAACAGAAATCGATAACACTTTACACT
GCCAGATAAAAACGGAATTACTGAAACTAGAGAGTGATTTGGAAACGTAT
AATCCCTTAGACACAGGGATAAATCAAAACGAAATTCGACTAGCAATCTC
CAAATTAAAGAACAGTAAAGCCTCTGGAAACGACTTAATACTTAATGAAA
TGTTGAAAAGTGCTGCCCATATCCTTATAAATCCGTTGGCCAAATTATTC
AATTTAATCCTGTCATCAGGCCACTTTCCGCAAAAATGGTGTGAAAGTCA
TATTGTCCCCATACACAAAGGCGGCTCCAAAGACGACCCTAACAACTATA
GGGGGATCTCTGTCACTAGTTGTCTTGCCAAGTTATTCACAACAATTCTG
AACACACGCCTCACTAACTATTTAGACGAACATTCCATTATCTCCCCAAA
TCAGTCAGGTTTCAGGAAAAACTTTAGGACAAGCGATAATCTGTTTGTCA
TTGACTCGTTAATATCTAAACACACCAATACTAACAAACGTTTATATGCA
TGTTTTGTAGATTTTAGAAAAGCATTTGACTGTGTGTGGAGAGAGGGACT
CCGTTACAAATTACTAAGTTCGGGAATAGGTGGTAAATTCTATAGTTTAC
TTACATCAATGTATTCTAATCCAAAGACCTGCGTCAAAACCTCTACGGGT
CTTACACCATTATTCACTACTGATAGAGGCGTGAAACAGGGATGTAACCT
CTCTCCCACACTTTTTAACTTATTCATAAATGATTTAGTCAAAGAATTAG
ATAATTCCGACTGTGAACCCCCCACTCTACACAATCTACTTGTTCCTTGT
TTATTGTATGCTGATGATGTCGTGATATTTTCAGAGTCGGAAAAAGGATT
ACAACGTGCCTTGGACAGACTGAACATGTTCTGTACAAAATGGAAACTAC
AAGTAAACATGAAGAAAACTAAAGTTGTAATTTTCAACAAATCTGGACGA
TCAGTAAAAAATGTGAAATTTTCCTTTGGCTCAGATACTATTGAAATAAC
AAATTCTTATTGTTATCTGGGACTATTGTTGTCCTCATCAGGCACTTTTT
CCTTAGCAAAAAAACAGTTGTCCTTAAAAGCACGCAAAGCCCTTTTCAGT
CTCAAACCGCTCTTTCGCTCACCTCTGTCCCCTAAGGCTCTGTTAAGAAT
ATTTGATGTGTGTGTTAAATCTATTATGTTATATGGCAGTGAAGTTTGGG
GCAAGGACCATTTGAATGACAGGTGTCCGATTGAAACTATGCAGAACCGT
TTCTGTAAAAATATTCTTGGAGTGCACCGAAATTCCAGTAATATAGCAAG
TAAAGCAGAGCTTGGAGTGTTCCCGGTAGATTTAGATGTGTCAATCCGCA
TAGTTAAGTATTGGTTGCGCCTCAGACAACTCGATCCTTTGACTCATCCT
TTACAAGTAGATGCTCTATTGTATCAACAGTCTTCCCAAGTGAATAGCAA
CAAGAAAAACTGGTTACAACATGTGAAAGATGTACTTGACAATAGCGGAT
ACTCCTTTATCTGGAACGCCAACAATCTCGATCTAGACATACAACATATA
TGTACATTGTTAAGAAAAAGGCTGACCGACATTTACATTCAAAGTTTTCT
TTATAAATTATCTATCGATGACAGTAAGTTAAGATTTTATAGGAATGTTA
AAACAGAATACTCAATGGAAAAATATCTTTCCAACAAAGATTTTGAACAA
CGGTCAGCTGTGTGTAAGATACGAATAAGTGCTCATCCACTAGAAATAGA
GAAGGGTAGATATAAAAAGCTGCCCGCTCACGAGAGAATGTGTAAGTTTT
GTACAATGAACGCAGTGGAAAATGAAATACATTTCCTTTGCCAATGCCCT
CTATATGAGGCCGAAAGAAACGATTTATATAAAACAGCTTCCGTTAATTC
TCCTAGCTTTCACCATTTGAATAGCTTACAAAAATCCATATCACTACTAA
AATCAACAAACCCACTTACGATGAAAAACGTGGGTCTCTTCATTTTCCAC
TGCCTTCAAAAAAGAAGTCAAACCCAACCATAGTCAACCTTAGTTAACTT
AGAACTTTGACAGTAGTCTAGATAACTATTTTTGATTCCCATGTATTCCC
ATGTACTTGTTTGTCTGCAATTAGCCTTCGGGCATGAACTTGCAATAAAG
TTATTATTATTAAC Coding sequence (CDS) from alignment at Sc0000296:17868..20431+ >transcript:BL86127_cuf0 ID=transcript:BL86127_cuf0|Name=transcript:BL86127_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2433bp|location=Sequence derived from alignment at Sc0000296:17868..20431+ (Branchiostoma lanceolatum)
CAAACTCAAAACAAACGCAAAACTAAGAAAAACTGGTTCACAGAGACGTG
TGCAGCAGCCAGACGAAATTTATATAATCTGGGCAAATTGCTTTCAAAAA
ATCCACGGCACCCCTTTATCAGGGGCCAGTATTTTAAAAGGAAGAAAGAA
TATATTAGACTGATTCGGAAAACGAAAAAAGATCACAAAGACAATATTCT
CCAACAACTTGACTCTCATTCGGCCAACAACCCGTCAGCGTTTTGGGATC
TAATTAAACTGTTTAAATCAAATGATCACAACGCCTTACAAGAAACAATT
GACAAACAAGCCCTTCACACGCACTTTGAAAATTTGTATGGAAAAACCTT
CGAATTCAACTCTGACAAGTCCGAAACAGAAATCGATAACACTTTACACT
GCCAGATAAAAACGGAATTACTGAAACTAGAGAGTGATTTGGAAACGTAT
AATCCCTTAGACACAGGGATAAATCAAAACGAAATTCGACTAGCAATCTC
CAAATTAAAGAACAGTAAAGCCTCTGGAAACGACTTAATACTTAATGAAA
TGTTGAAAAGTGCTGCCCATATCCTTATAAATCCGTTGGCCAAATTATTC
AATTTAATCCTGTCATCAGGCCACTTTCCGCAAAAATGGTGTGAAAGTCA
TATTGTCCCCATACACAAAGGCGGCTCCAAAGACGACCCTAACAACTATA
GGGGGATCTCTGTCACTAGTTGTCTTGCCAAGTTATTCACAACAATTCTG
AACACACGCCTCACTAACTATTTAGACGAACATTCCATTATCTCCCCAAA
TCAGTCAGGTTTCAGGAAAAACTTTAGGACAAGCGATAATCTGTTTGTCA
TTGACTCGTTAATATCTAAACACACCAATACTAACAAACGTTTATATGCA
TGTTTTGTAGATTTTAGAAAAGCATTTGACTGTGTGTGGAGAGAGGGACT
CCGTTACAAATTACTAAGTTCGGGAATAGGTGGTAAATTCTATAGTTTAC
TTACATCAATGTATTCTAATCCAAAGACCTGCGTCAAAACCTCTACGGGT
CTTACACCATTATTCACTACTGATAGAGGCGTGAAACAGGGATGTAACCT
CTCTCCCACACTTTTTAACTTATTCATAAATGATTTAGTCAAAGAATTAG
ATAATTCCGACTGTGAACCCCCCACTCTACACAATCTACTTGTTCCTTGT
TTATTGTATGCTGATGATGTCGTGATATTTTCAGAGTCGGAAAAAGGATT
ACAACGTGCCTTGGACAGACTGAACATGTTCTGTACAAAATGGAAACTAC
AAGTAAACATGAAGAAAACTAAAGTTGTAATTTTCAACAAATCTGGACGA
TCAGTAAAAAATGTGAAATTTTCCTTTGGCTCAGATACTATTGAAATAAC
AAATTCTTATTGTTATCTGGGACTATTGTTGTCCTCATCAGGCACTTTTT
CCTTAGCAAAAAAACAGTTGTCCTTAAAAGCACGCAAAGCCCTTTTCAGT
CTCAAACCGCTCTTTCGCTCACCTCTGTCCCCTAAGGCTCTGTTAAGAAT
ATTTGATGTGTGTGTTAAATCTATTATGTTATATGGCAGTGAAGTTTGGG
GCAAGGACCATTTGAATGACAGGTGTCCGATTGAAACTATGCAGAACCGT
TTCTGTAAAAATATTCTTGGAGTGCACCGAAATTCCAGTAATATAGCAAG
TAAAGCAGAGCTTGGAGTGTTCCCGGTAGATTTAGATGTGTCAATCCGCA
TAGTTAAGTATTGGTTGCGCCTCAGACAACTCGATCCTTTGACTCATCCT
TTACAAGTAGATGCTCTATTGTATCAACAGTCTTCCCAAGTGAATAGCAA
CAAGAAAAACTGGTTACAACATGTGAAAGATGTACTTGACAATAGCGGAT
ACTCCTTTATCTGGAACGCCAACAATCTCGATCTAGACATACAACATATA
TGTACATTGTTAAGAAAAAGGCTGACCGACATTTACATTCAAAGTTTTCT
TTATAAATTATCTATCGATGACAGTAAGTTAAGATTTTATAGGAATGTTA
AAACAGAATACTCAATGGAAAAATATCTTTCCAACAAAGATTTTGAACAA
CGGTCAGCTGTGTGTAAGATACGAATAAGTGCTCATCCACTAGAAATAGA
GAAGGGTAGATATAAAAAGCTGCCCGCTCACGAGAGAATGTGTAAGTTTT
GTACAATGAACGCAGTGGAAAATGAAATACATTTCCTTTGCCAATGCCCT
CTATATGAGGCCGAAAGAAACGATTTATATAAAACAGCTTCCGTTAATTC
TCCTAGCTTTCACCATTTGAATAGCTTACAAAAATCCATATCACTACTAA
AATCAACAAACCCACTTACGATGAAAAACGTGGGTCTCTTCATTTTCCAC
TGCCTTCAAAAAAGAAGTCAAACCCAACCATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000296 | genome | Sc0000296:17868..20431 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86127_cuf0 |
| Biotype | protein_coding |
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