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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86020_cuf0 >transcript:BL86020_cuf0-protein ID=transcript:BL86020_cuf0-protein|Name=transcript:BL86020_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=661bp
HAPFISKRTKANQPKWLTPDLRRLMHDRDSTKARARRTGATVDWEGYKAK
RNHVNKLVKQAKAMYCQQKLKENMSNSSKLWATIKEVLPNKNPVVTKSLH
WGGQFYKDPSSIVSCFNNFFVSIGNKLAEKFTKQTGNLVCPDKYKKLTST
FAFKEVTEVTVYDKLRVLGTNKATGLDKIHSRLLKAAAPCICKPMAHIFN
LSLSSGIIPKEWKTAKVTPIHKGGEKEDPNNYRPISVLPVIMKAFEKEVH
GQFLEYLHHHSILSEQQSGFRPGHSTATTLLDVTDYVYQNIDSGNLVGAV
FLDLKKAFDTVDHLLLLKKLSWIGVKDVELKWFTNYLSDRKQSVSVDGCV
SDYLPVTVGVPQGSILGPLLFIMFINDLPDCISNKVCLYADDTAIFCSSN
DTRYIEATLNSELSHIATWFQLNHLTLNASKTKWMLFGSSGKLMKAHPMS
IKIGLESIERVVSFKYLGLILDDKLLWNEHVDKLCSKVTQRVGLLRRLRP
CFTVNIADMLYKAMVLPLLDYCDTVWDSCGVGRQQQLQVLQNRAARVVLQ
LNLQSSSVLDLHEKLSWQYLAGRRRDHVCIMVYKCINGLAPTYLSSTFSH
NHNLHNYQTRQTSLLYKPFFKTTTGQRTFAYRGAKHFNSLPAYIKQVPSL
NTFKSALKDLT Run BLAST on NCBI mRNA from alignment at Sc0000077:324957..327188+ Legend: CDSpolypeptideexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86020_cuf0 ID=transcript:BL86020_cuf0|Name=transcript:BL86020_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2232bp|location=Sequence derived from alignment at Sc0000077:324957..327188+ (Branchiostoma lanceolatum)
CATGCCCCATTCATATCAAAACGCACTAAGGCAAATCAGCCTAAATGGCT
TACACCTGACCTTCGGCGACTGATGCATGACAGAGATAGCACTAAGGCGA
GAGCCCGTAGGACAGGTGCTACTGTAGACTGGGAAGGATATAAGGCCAAA
AGAAACCATGTCAACAAATTGGTCAAACAGGCCAAAGCAATGTACTGTCA
ACAAAAACTCAAAGAAAATATGTCAAACTCAAGTAAGTTATGGGCAACAA
TAAAGGAAGTACTTCCAAACAAAAACCCTGTTGTTACCAAGTCACTACAT
TGGGGAGGGCAGTTCTACAAGGACCCCTCTAGCATAGTCTCCTGTTTCAA
CAACTTCTTTGTTTCCATTGGAAACAAGTTAGCTGAGAAGTTCACGAAAC
AGACAGGTAACTTAGTTTGCCCAGACAAGTACAAGAAGCTAACATCCACT
TTCGCCTTCAAGGAGGTAACAGAAGTTACTGTATACGACAAGCTCAGAGT
CTTAGGGACAAACAAGGCCACAGGGTTAGACAAGATACACTCAAGACTGC
TGAAAGCAGCTGCACCATGTATATGCAAACCTATGGCCCACATATTTAAT
CTGTCTCTCTCATCTGGTATCATTCCTAAGGAATGGAAAACAGCTAAGGT
GACCCCAATACACAAAGGGGGGGAAAAAGAGGATCCAAATAATTATAGGC
CTATATCTGTTCTTCCAGTTATCATGAAAGCTTTTGAAAAAGAGGTACAT
GGTCAGTTCCTGGAATATCTCCACCATCATAGCATTCTCTCTGAACAGCA
GTCTGGGTTCCGGCCAGGTCATTCCACAGCTACTACATTACTGGATGTCA
CTGACTATGTGTATCAAAACATTGACAGTGGAAACCTAGTGGGGGCTGTG
TTTTTAGACCTGAAGAAGGCTTTTGATACAGTAGACCATCTCTTGTTACT
GAAAAAACTGTCCTGGATCGGGGTTAAAGATGTAGAACTCAAATGGTTCA
CAAATTACCTATCTGATAGAAAGCAGTCAGTATCTGTAGACGGTTGTGTA
TCTGATTATCTCCCAGTGACAGTAGGAGTGCCTCAAGGGTCAATCCTGGG
GCCGTTGTTATTTATTATGTTTATAAATGATCTACCAGACTGTATCTCCA
ACAAAGTATGTCTCTATGCTGATGATACGGCAATTTTTTGCTCCAGTAAT
GACACTAGGTACATTGAAGCCACTCTGAATTCAGAACTCTCCCATATAGC
TACATGGTTCCAGTTAAACCATTTGACCTTAAATGCTTCAAAGACAAAGT
GGATGCTCTTTGGGAGCAGTGGTAAGCTTATGAAAGCACATCCAATGTCA
ATCAAAATTGGACTAGAGTCAATAGAAAGAGTGGTTTCATTTAAATACCT
AGGGCTTATTCTTGATGATAAATTGTTGTGGAATGAACATGTTGACAAAC
TCTGCTCAAAGGTAACCCAACGAGTAGGTTTACTCAGACGTCTTAGACCT
TGCTTCACTGTAAATATAGCTGACATGTTGTATAAAGCAATGGTACTCCC
CCTTCTGGATTACTGTGACACCGTGTGGGACAGCTGCGGAGTGGGGAGAC
AACAACAACTCCAAGTGCTACAGAACCGGGCTGCCAGGGTAGTTCTGCAA
CTGAACCTACAGTCCAGCAGTGTCCTCGACCTTCATGAGAAGCTCAGCTG
GCAGTATCTCGCAGGGAGAAGGCGGGATCATGTGTGCATTATGGTTTACA
AGTGTATAAATGGGCTAGCACCAACATACCTATCATCCACCTTCTCTCAC
AACCACAACTTACACAATTACCAAACCAGACAGACATCACTCCTATACAA
ACCTTTTTTCAAGACCACAACAGGACAGCGTACATTTGCCTACAGAGGTG
CTAAACACTTTAATTCACTACCAGCCTACATTAAGCAAGTTCCAAGCCTG
AATACATTTAAGTCAGCTTTGAAAGACCTAACATAGTCTCAGTACTGAGT
AGTGACCTCTGACCTCCTAACTGTTGACCTTGGTTTGGATTATGATTTTG
AGTTATCTGTCTTTCATGTTTCAGTTGTACCCATATGTTCCGACGTGTAT
GTCTACTTTTCTCTCTGTAAGTTGTTTTTTATTTTCCATGTATGTATATG
TGAAACTGGGCCCTATCGAAAACCAGTGTATTGGCACTGAATAGGCTACC
CAGGTGTTTCAAAATAAACAAACAAACAAACA Coding sequence (CDS) from alignment at Sc0000077:324957..327188+ >transcript:BL86020_cuf0 ID=transcript:BL86020_cuf0|Name=transcript:BL86020_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1986bp|location=Sequence derived from alignment at Sc0000077:324957..327188+ (Branchiostoma lanceolatum)
CATGCCCCATTCATATCAAAACGCACTAAGGCAAATCAGCCTAAATGGCT
TACACCTGACCTTCGGCGACTGATGCATGACAGAGATAGCACTAAGGCGA
GAGCCCGTAGGACAGGTGCTACTGTAGACTGGGAAGGATATAAGGCCAAA
AGAAACCATGTCAACAAATTGGTCAAACAGGCCAAAGCAATGTACTGTCA
ACAAAAACTCAAAGAAAATATGTCAAACTCAAGTAAGTTATGGGCAACAA
TAAAGGAAGTACTTCCAAACAAAAACCCTGTTGTTACCAAGTCACTACAT
TGGGGAGGGCAGTTCTACAAGGACCCCTCTAGCATAGTCTCCTGTTTCAA
CAACTTCTTTGTTTCCATTGGAAACAAGTTAGCTGAGAAGTTCACGAAAC
AGACAGGTAACTTAGTTTGCCCAGACAAGTACAAGAAGCTAACATCCACT
TTCGCCTTCAAGGAGGTAACAGAAGTTACTGTATACGACAAGCTCAGAGT
CTTAGGGACAAACAAGGCCACAGGGTTAGACAAGATACACTCAAGACTGC
TGAAAGCAGCTGCACCATGTATATGCAAACCTATGGCCCACATATTTAAT
CTGTCTCTCTCATCTGGTATCATTCCTAAGGAATGGAAAACAGCTAAGGT
GACCCCAATACACAAAGGGGGGGAAAAAGAGGATCCAAATAATTATAGGC
CTATATCTGTTCTTCCAGTTATCATGAAAGCTTTTGAAAAAGAGGTACAT
GGTCAGTTCCTGGAATATCTCCACCATCATAGCATTCTCTCTGAACAGCA
GTCTGGGTTCCGGCCAGGTCATTCCACAGCTACTACATTACTGGATGTCA
CTGACTATGTGTATCAAAACATTGACAGTGGAAACCTAGTGGGGGCTGTG
TTTTTAGACCTGAAGAAGGCTTTTGATACAGTAGACCATCTCTTGTTACT
GAAAAAACTGTCCTGGATCGGGGTTAAAGATGTAGAACTCAAATGGTTCA
CAAATTACCTATCTGATAGAAAGCAGTCAGTATCTGTAGACGGTTGTGTA
TCTGATTATCTCCCAGTGACAGTAGGAGTGCCTCAAGGGTCAATCCTGGG
GCCGTTGTTATTTATTATGTTTATAAATGATCTACCAGACTGTATCTCCA
ACAAAGTATGTCTCTATGCTGATGATACGGCAATTTTTTGCTCCAGTAAT
GACACTAGGTACATTGAAGCCACTCTGAATTCAGAACTCTCCCATATAGC
TACATGGTTCCAGTTAAACCATTTGACCTTAAATGCTTCAAAGACAAAGT
GGATGCTCTTTGGGAGCAGTGGTAAGCTTATGAAAGCACATCCAATGTCA
ATCAAAATTGGACTAGAGTCAATAGAAAGAGTGGTTTCATTTAAATACCT
AGGGCTTATTCTTGATGATAAATTGTTGTGGAATGAACATGTTGACAAAC
TCTGCTCAAAGGTAACCCAACGAGTAGGTTTACTCAGACGTCTTAGACCT
TGCTTCACTGTAAATATAGCTGACATGTTGTATAAAGCAATGGTACTCCC
CCTTCTGGATTACTGTGACACCGTGTGGGACAGCTGCGGAGTGGGGAGAC
AACAACAACTCCAAGTGCTACAGAACCGGGCTGCCAGGGTAGTTCTGCAA
CTGAACCTACAGTCCAGCAGTGTCCTCGACCTTCATGAGAAGCTCAGCTG
GCAGTATCTCGCAGGGAGAAGGCGGGATCATGTGTGCATTATGGTTTACA
AGTGTATAAATGGGCTAGCACCAACATACCTATCATCCACCTTCTCTCAC
AACCACAACTTACACAATTACCAAACCAGACAGACATCACTCCTATACAA
ACCTTTTTTCAAGACCACAACAGGACAGCGTACATTTGCCTACAGAGGTG
CTAAACACTTTAATTCACTACCAGCCTACATTAAGCAAGTTCCAAGCCTG
AATACATTTAAGTCAGCTTTGAAAGACCTAACATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000077 | genome | Sc0000077:324957..327188 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86020_cuf0 |
| Biotype | protein_coding |
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