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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86018_cuf3 >transcript:BL86018_cuf3-protein ID=transcript:BL86018_cuf3-protein|Name=transcript:BL86018_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=237bp
DVSGRSVPRCEGGKVWNDLPRVCECPQWMYWYEPTHGCEPCSLLCRGEVS
HCEARIECQGYLQSLTSTRQPGSTESSWTVPPASQISELLTELKTCELAV
IFFGAVLLIVVFIIICMGWTLCKLKKQISKNAGINAHVQQPIERQSIKDL
TFAKQRYEPDGALPEEARRSTCLQPDTQETEELLSQGAQCARVVTSPSPS
DHDVRHSPTSDTELHKPSVNEHGDIFQQHHDAENSNQ Run BLAST on NCBI mRNA from alignment at Sc0000326:225276..229791+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86018_cuf3 ID=transcript:BL86018_cuf3|Name=transcript:BL86018_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4516bp|location=Sequence derived from alignment at Sc0000326:225276..229791+ (Branchiostoma lanceolatum)
CAGATGTCTCTGGAAGATCTGTTCCCCGCTGTGAGGGTGGAAAAGTCTGG
AATGATCTGCCGCGGGTGTGTGAATGCCCACAGTGGATGTACTGGTATGA
GCCCACCCACGGATGTGAGCCCTGCAGTCTGCTGTGCAGGGGGGAAGTGT
CGCATTGTGAAGCTCGGATTGAATGCCAAGGTATGTATGGGAGATAATGA
GCATTGACACTTTGTCACAAGTATTTGTGGGGGAAGTGCGTTTTGAAGGA
AAAATATCTAACAGTAACAGAATTTGTATGTGTGAAATATTGCTAGCCAC
GTTACTTCCGCTGGTCTTGCCGTGCTATTTCATGCAGATGGAATATAGAT
CATCATGATCAGTTGTTTGATTCATTGATCTTTCAAATGTTATCAACTTT
CACTCCTTCAGTCTACCATCCCTCAGCCCGAGCAATTAGAATTTTATTCA
GCTTGAAATGAAAAGAGTCCCTTACTAATTGAAAACCCCAAATGAGGTCA
CCACCAAAAATAGAAGGGGAAGCCCCCCCCCCCCCCANCCCCCCCCCCCG
TAATGGACTGTTCCAACTACAGATATGACGGGGGAGGCAAATAAGAAAAT
GTGGACTCTTGGCCATCTGCCTGCTGTGGGTCTCTTTTATTACAAATTTC
ATCACATTGTACTGTATAGATTTATGATGCATGAAATGTTACAGGATACT
TGCAGTCTCTGACATCAACACGACAGCCAGGCTCTACCGAATCATCATGG
ACTGTCCCCCCAGCTTCACAGATCAGTGAACTTTTAACAGGTGAGGATAC
ATTTTGATACTCTTTACAGTCAATACGCCTAACAATTCTACTTGGGCATC
TCTGGAGAGGAGCAGACAGGATTCCTGCCTTATTTATATATAATTATGCT
ACAGTCCCAATTGTGCCACTGCCCGTAGGGGATGTGGTCCCGGCCATCTC
AGTAATTGTGCAGATAAGGAAGAATGCATTACAAAGAGCACATTGTCAAT
CGTGGCATAACGGTAGGGTGTTTGGCCCAGAACCCGAGGTCTTTGGTACG
AAACCCCTGACATGACACCAATGTTGTGCCATTGGAAAAGGTACTTAACG
CGATTTTCCTCACTCCACCCAGGTGTAGAAATGAGTACTTGACTTTGGTT
GGGGAGGTAAAAGGTGGTGGAAGGAGAGTGATGGGCCCAACCTTACAGTA
CTGTGCCATAGACACAGAGGATAACAACCCACTGCCCCTATAGCCTCAAG
AAGGCAGAGGGACTGCCTTTACCTACCTACCTACCATCCTACATTTTACA
GTGCAGAGATGAGTCACTGTCAGCAACCAAAATGTTACGTGGCACATTTT
TCTAACCAAAAGTTTCTTTTATTCTTTTCATTCCAACCTTTAGAACTGAA
AACATGTGAGCTGGCTGTCATTTTTTTTGGAGCAGTTCTGCTCATTGTTG
TTTTCATAATCATCTGCATGGGGTGGACTTTGTGCAAGTTGAAGAAGCAG
ATCTCCAAGAATGCTGGCATTAATGCACATGTACAGCAGCCTATTGAGAG
GCAAAGGTTGGTTTCATCATCATCTCTAAAAATAGTCACTCAAGCAACTG
GATAAAATTTTGAAACAGTCAGACATTTCAGACAGCATCCGCTGTCTTTT
GTCAGTCACTGACGAAAGACAGCGGATGCTGTCTGAAACGTCTGACTGTT
TCAAAATTTTATCCAGTTGCTTGAGTAACTATTTTTAGCGTATCTTACTA
CCTGGATGTCTAACCTTCATCAACGCATCATCATCTCTGTTTATTACTGT
GCTGTAATCTACAATCTGTACTGAGAGTCATGCTTTTTTTCGTACAGAAT
GTATGTACAACATACTAGTAAATACTGTGTGTCAGTTCAAATATAGCACT
ACTATCAGAGAACAAGTAGCAACTTGACCAAATATTTCTGGTACAATATA
CTGGTGAAATTTTTGATCCACTGAGTTGTGTATGGTGTTTTTTTTCTCTA
TTATATACTGCTGCATTACCTTGCCACACATTTGTACAAAAAGCTATAGA
CATCTTATGACAGCCAGGACTGCCTGGCTGCAAGGCTTTGGCTTTTATGT
TATGTCTAACAGTGTATCATTTATTGTAGTATACAATACATTGTTAGACA
TAACGTTATTAACAGAACAACGCATCTTCTTGGCTTTCAGTATTAAGGAC
CTCACCTTTGCAAAGCAGCGGTACGAGCCTGATGGTGCTCTACCTGAGGA
GGCCAGAAGATCCACCTGTCTCCAACCTGATACACAGGAAACTGAGGAGC
TGCTATCTCAAGGTAATCATCTTCACAAGACACTAGTGTCATAGATCTGA
GACGTACTTACCATAGTGGCTGTTTTTGAAATCCTACACGTAGAATTGCA
GTGAATCATTAAAAGATTTGCAAGTGCTCATGATGAAATGAGAGAAATTG
GCAATAGACTGTATGTTTGATACCATTAGTTACATTTGTATGTTGCATTA
TTTACTGACATGTGTTTTTGTTGCTGTATTAGGTGCCCAATGTGCACGCG
TAGTGACATCTCCCTCTCCCTCTGACCACGATGTCCGGCACAGCCCCACC
AGTGATACAGAGCTGCACAAACCATCAGTGAATGAACATGGAGATATTTT
TCAGCAGCACCATGATGCTGAGAACAGCAATCAGTGAATTTTTGCTCTGA
ATAAAAAACAGAATGATAAAATTCAGGACAGAACTACAATGTATAAAGGC
CGACATTTGCTCCCAAGGAAATTCAGCATACTTCACTCCCTCCCCATGTA
ATGATGGACGCTTTGCGCGAGTGGTCCTGCAACGTGACATCAAATAACCC
GAATGGAACACGTCTTCGGTGGCCAACGGCAGATGGAACGGGTCGAACGT
TGATTGAATGTGGAACGGGGATAGCACTTTTGGCCCATTTTTGGTCTAAA
AATAGCCCCAGAAGTCCCCAATATGAGTCATTTTGAAGTGATGTATACCA
AAAATGTGATTTAAGTCCCATGGGCACATGTACAAAGCACCCTTAGGCCA
CATAAATTTATTTTCTTGGCTAACGGAATAAAAAAAAATGTTAATGCCAT
ATTGGAAAAACAACATGAAAATAGAATCAGGAAGTGAATAGGGTCAGGTG
CAAGTTTTCACTCCAGCCTTCTGTTTTCATGATTGTTTTTGGCTAAAATT
GAAAATAAAAATCTGTTAACCAAGAAATCAAATTGGTGTGGCCTTATACC
AAATTGCAGGTCATTTGGTTGAAATACCAGGGCACAGGAGCCCAAAATAT
ACATTTTGTCTAAAAATTGCCAAGAAACATTTAAAAAATAATTTCAAAAG
TATATACGTTGCGTACAACAAAAATGTAAGAAAAAAGGCTGGGTGTATTT
CGTACCTTCATGCAAAATTTCAGGTCATTTGGCCCAAAAATGAGAAAGTT
GAATCCATTCAAACATTTGGCAGGAGGAGGAGAAGAAGAAGAAGAACATG
ACAAAAAAACAATATACATATATTTCACTCCACCCATACGTACGGTATGG
GGAGTGAAATATAATTTGGAAAAGAAAGTTAATGTTTGTACATAATTGCT
TTCCTTGCCCTGTCACTATTCTTATAGTTGGAAAGTTGGATCAGTTTTTA
GCCATCAATATATATCTTTTATATATGGTACAATTTACTTTTTTTCAAAC
CTTTGAAGTTATTGTATCAACATAATCTTACAGCTCTATTGTTCACCTTG
ATTATTTTGTAATGATTAGAATGTAAAATGTGTTATGTTAGCACGTGATG
TAGACATGTAGTGCTATTCTGTAAATTACATGTATTATTATATCCATCTC
TTTTAGCAATAGATGAAGAATGCATTGTATAATGTATACTGCATTTGGTA
CAGTAGCATATTTGCTTGATTGCATGAGATGTACATATTATAATTCTACA
ATAAAACTTTTATGAAAATATCAGCTTGTAATTTTTGTATAGGTAACAGT
ATGTCTTTGAACAGTTGTAAGGTGAATGCAGCCCCTGGCTGCCTTTTGTT
ATTAGGTCCAGTTACATGCACTCAGCCGTGGCGACTTCAGAAGGGTGTTT
GTGCTTGTTATTATATCACACTAGCCCTTCGAAGGGCTAGTGTAATATAG
TAACATTTAGCAAAAACGCCCTTCTGAAGTCGCCACGGCTATGAGTTACT
TTGTGTAATACAAACCTTGTAAAGCTACCCCATGGTGTAACCAAGGAGGT
TTTATGTAAAACCTCCTTGGTTCTACACAGGGATATCAGATCCCCCCCCC
CCCCATCCATTCAACACCATCAATCCACTCAACACCACCATCATTCTAGT
CATGACGCCATTCCCCAACCAGGCCTTCATTCAACCAGCCTTCCATCCAT
ACATTCCACAATCTATCCACCAGCCCCTGATGACACCCATCTACCCACAA
CCCATCAACACCCCACTTCCATCAACACCACAAATCAACACCCCCTCCCC
TACATTCCATATCAAG Coding sequence (CDS) from alignment at Sc0000326:225276..229791+ >transcript:BL86018_cuf3 ID=transcript:BL86018_cuf3|Name=transcript:BL86018_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3570bp|location=Sequence derived from alignment at Sc0000326:225276..229791+ (Branchiostoma lanceolatum)
GATGTCTCTGGAAGATCTGTTCCCCGCTGTGAGGGTGGAAAAGTCTGGAA
TGATCTGCCGCGGGTGTGTGAATGCCCACAGTGGATGTACTGGTATGAGC
CCACCCACGGATGTGAGCCCTGCAGTCTGCTGTGCAGGGGGGAAGTGTCG
CATTGTGAAGCTCGGATTGAATGCCAAGGATACTTGCAGTCTCTGACATC
AACACGACAGCCAGGCTCTACCGAATCATCATGGACTGTCCCCCCAGCTT
CACAGATCAGTGAACTTTTAACAGAACTGAAAACATGTGAGCTGGCTGTC
ATTTTTTTTGGAGCAGTTCTGCTCATTGTTGTTTTCATAATCATCTGCAT
GGGGTGGACTTTGTGCAAGTTGAAGAAGCAGATCTCCAAGAATGCTGGCA
TTAATGCACATGTACAGCAGCCTATTGAGAGGCAAAGTATTAAGGACCTC
ACCTTTGCAAAGCAGCGGTACGAGCCTGATGGTGCTCTACCTGAGGAGGC
CAGAAGATCCACCTGTCTCCAACCTGATACACAGGAAACTGAGGAGCTGC
TATCTCAAGGTGCCCAATGTGCACGCGTAGTGACATCTCCCTCTCCCTCT
GACCACGATGTCCGGCACAGCCCCACCAGTGATACAGAGCTGCACAAACC
ATCAGTGAATGAACATGGAGATATTTTTCAGCAGCACCATGATGCTGAGA
ACAGCAATCAGTGAGATGTCTCTGGAAGATCTGTTCCCCGCTGTGAGGGT
GGAAAAGTCTGGAATGATCTGCCGCGGGTGTGTGAATGCCCACAGTGGAT
GTACTGGTATGAGCCCACCCACGGATGTGAGCCCTGCAGTCTGCTGTGCA
GGGGGGAAGTGTCGCATTGTGAAGCTCGGATTGAATGCCAAGGATACTTG
CAGTCTCTGACATCAACACGACAGCCAGGCTCTACCGAATCATCATGGAC
TGTCCCCCCAGCTTCACAGATCAGTGAACTTTTAACAGAACTGAAAACAT
GTGAGCTGGCTGTCATTTTTTTTGGAGCAGTTCTGCTCATTGTTGTTTTC
ATAATCATCTGCATGGGGTGGACTTTGTGCAAGTTGAAGAAGCAGATCTC
CAAGAATGCTGGCATTAATGCACATGTACAGCAGCCTATTGAGAGGCAAA
GTATTAAGGACCTCACCTTTGCAAAGCAGCGGTACGAGCCTGATGGTGCT
CTACCTGAGGAGGCCAGAAGATCCACCTGTCTCCAACCTGATACACAGGA
AACTGAGGAGCTGCTATCTCAAGGTGCCCAATGTGCACGCGTAGTGACAT
CTCCCTCTCCCTCTGACCACGATGTCCGGCACAGCCCCACCAGTGATACA
GAGCTGCACAAACCATCAGTGAATGAACATGGAGATATTTTTCAGCAGCA
CCATGATGCTGAGAACAGCAATCAGTGAGATGTCTCTGGAAGATCTGTTC
CCCGCTGTGAGGGTGGAAAAGTCTGGAATGATCTGCCGCGGGTGTGTGAA
TGCCCACAGTGGATGTACTGGTATGAGCCCACCCACGGATGTGAGCCCTG
CAGTCTGCTGTGCAGGGGGGAAGTGTCGCATTGTGAAGCTCGGATTGAAT
GCCAAGGATACTTGCAGTCTCTGACATCAACACGACAGCCAGGCTCTACC
GAATCATCATGGACTGTCCCCCCAGCTTCACAGATCAGTGAACTTTTAAC
AGAACTGAAAACATGTGAGCTGGCTGTCATTTTTTTTGGAGCAGTTCTGC
TCATTGTTGTTTTCATAATCATCTGCATGGGGTGGACTTTGTGCAAGTTG
AAGAAGCAGATCTCCAAGAATGCTGGCATTAATGCACATGTACAGCAGCC
TATTGAGAGGCAAAGTATTAAGGACCTCACCTTTGCAAAGCAGCGGTACG
AGCCTGATGGTGCTCTACCTGAGGAGGCCAGAAGATCCACCTGTCTCCAA
CCTGATACACAGGAAACTGAGGAGCTGCTATCTCAAGGTGCCCAATGTGC
ACGCGTAGTGACATCTCCCTCTCCCTCTGACCACGATGTCCGGCACAGCC
CCACCAGTGATACAGAGCTGCACAAACCATCAGTGAATGAACATGGAGAT
ATTTTTCAGCAGCACCATGATGCTGAGAACAGCAATCAGTGAGATGTCTC
TGGAAGATCTGTTCCCCGCTGTGAGGGTGGAAAAGTCTGGAATGATCTGC
CGCGGGTGTGTGAATGCCCACAGTGGATGTACTGGTATGAGCCCACCCAC
GGATGTGAGCCCTGCAGTCTGCTGTGCAGGGGGGAAGTGTCGCATTGTGA
AGCTCGGATTGAATGCCAAGGATACTTGCAGTCTCTGACATCAACACGAC
AGCCAGGCTCTACCGAATCATCATGGACTGTCCCCCCAGCTTCACAGATC
AGTGAACTTTTAACAGAACTGAAAACATGTGAGCTGGCTGTCATTTTTTT
TGGAGCAGTTCTGCTCATTGTTGTTTTCATAATCATCTGCATGGGGTGGA
CTTTGTGCAAGTTGAAGAAGCAGATCTCCAAGAATGCTGGCATTAATGCA
CATGTACAGCAGCCTATTGAGAGGCAAAGTATTAAGGACCTCACCTTTGC
AAAGCAGCGGTACGAGCCTGATGGTGCTCTACCTGAGGAGGCCAGAAGAT
CCACCTGTCTCCAACCTGATACACAGGAAACTGAGGAGCTGCTATCTCAA
GGTGCCCAATGTGCACGCGTAGTGACATCTCCCTCTCCCTCTGACCACGA
TGTCCGGCACAGCCCCACCAGTGATACAGAGCTGCACAAACCATCAGTGA
ATGAACATGGAGATATTTTTCAGCAGCACCATGATGCTGAGAACAGCAAT
CAGTGAGATGTCTCTGGAAGATCTGTTCCCCGCTGTGAGGGTGGAAAAGT
CTGGAATGATCTGCCGCGGGTGTGTGAATGCCCACAGTGGATGTACTGGT
ATGAGCCCACCCACGGATGTGAGCCCTGCAGTCTGCTGTGCAGGGGGGAA
GTGTCGCATTGTGAAGCTCGGATTGAATGCCAAGGATACTTGCAGTCTCT
GACATCAACACGACAGCCAGGCTCTACCGAATCATCATGGACTGTCCCCC
CAGCTTCACAGATCAGTGAACTTTTAACAGAACTGAAAACATGTGAGCTG
GCTGTCATTTTTTTTGGAGCAGTTCTGCTCATTGTTGTTTTCATAATCAT
CTGCATGGGGTGGACTTTGTGCAAGTTGAAGAAGCAGATCTCCAAGAATG
CTGGCATTAATGCACATGTACAGCAGCCTATTGAGAGGCAAAGTATTAAG
GACCTCACCTTTGCAAAGCAGCGGTACGAGCCTGATGGTGCTCTACCTGA
GGAGGCCAGAAGATCCACCTGTCTCCAACCTGATACACAGGAAACTGAGG
AGCTGCTATCTCAAGGTGCCCAATGTGCACGCGTAGTGACATCTCCCTCT
CCCTCTGACCACGATGTCCGGCACAGCCCCACCAGTGATACAGAGCTGCA
CAAACCATCAGTGAATGAACATGGAGATATTTTTCAGCAGCACCATGATG
CTGAGAACAGCAATCAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000326 | genome | Sc0000326:225276..229791 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86018_cuf3 |
| Biotype | protein_coding |
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