transcript:BL86003_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86003_cuf0
Unique Nametranscript:BL86003_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86003_cuf0

>transcript:BL86003_cuf0-protein ID=transcript:BL86003_cuf0-protein|Name=transcript:BL86003_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=116bp
ADITTEFTTNPTSHAASTSASSPQSSTLPSTTQEQTTAVSTTEPSTTEFD
TTEEPTTSQGMSTLESSTQSPSTLQMSTTLSTTEHPFTTAVPHTTKEQAT
LTYTELSTIEFETTER
Run BLAST on NCBI

mRNA from alignment at Sc0000009:3594760..3595109+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86003_cuf0 ID=transcript:BL86003_cuf0|Name=transcript:BL86003_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=350bp|location=Sequence derived from alignment at Sc0000009:3594760..3595109+ (Branchiostoma lanceolatum)
CGCTGACATAACGACAGAGTTTACTACAAATCCAACATCTCATGCAGCTT
CAACATCAGCTTCGTCGCCACAGTCATCAACACTGCCATCCACAACTCAA
GAGCAAACAACGGCTGTGTCTACCACTGAACCGTCAACTACGGAATTTGA
CACGACAGAAGAACCTACTACATCTCAAGGAATGTCAACATTAGAGTCAT
CCACACAGTCACCATCCACCCTGCAGATGTCTACTACATTGTCCACAACA
GAACATCCGTTCACTACAGCAGTGCCACACACAACTAAAGAGCAAGCGAC
TTTAACTTACACTGAACTCTCAACTATCGAATTTGAGACCACGGAGCGTA

Coding sequence (CDS) from alignment at Sc0000009:3594760..3595109+

>transcript:BL86003_cuf0 ID=transcript:BL86003_cuf0|Name=transcript:BL86003_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=348bp|location=Sequence derived from alignment at Sc0000009:3594760..3595109+ (Branchiostoma lanceolatum)
GCTGACATAACGACAGAGTTTACTACAAATCCAACATCTCATGCAGCTTC
AACATCAGCTTCGTCGCCACAGTCATCAACACTGCCATCCACAACTCAAG
AGCAAACAACGGCTGTGTCTACCACTGAACCGTCAACTACGGAATTTGAC
ACGACAGAAGAACCTACTACATCTCAAGGAATGTCAACATTAGAGTCATC
CACACAGTCACCATCCACCCTGCAGATGTCTACTACATTGTCCACAACAG
AACATCCGTTCACTACAGCAGTGCCACACACAACTAAAGAGCAAGCGACT
TTAACTTACACTGAACTCTCAACTATCGAATTTGAGACCACGGAGCGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86003gene:BL86003Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86003_cuf0-E1BL86003_cuf0-E1-1564476830-91811Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86003_cuf0transcript:BL86003_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000009genomeSc0000009:3594760..3595109 +
Properties
Property NameValue
Transcript idBL86003_cuf0
Biotypeprotein_coding