transcript:BL85998_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85998_cuf0
Unique Nametranscript:BL85998_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85998_cuf0

>transcript:BL85998_cuf0-protein ID=transcript:BL85998_cuf0-protein|Name=transcript:BL85998_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=195bp
RTVPVTMEQSTLTSTLKETTVHDETTVQTSTEGSPTTMKSTTVVPTTPYT
TEKPSTIHTTGRTTTLLSSTGPLTTTEETTADESTQITTISTTSKPSTAM
NTEATTEASTETPTTLPETTVSTTADHTTHTSRKSTTGFSSTSYTTDKPS
TTYKDIQSTSSGKTTADQSTLVTTTLTTTKQPSTAMTTEATTEMS
Run BLAST on NCBI

mRNA from alignment at Sc0000009:3583341..3583927+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85998_cuf0 ID=transcript:BL85998_cuf0|Name=transcript:BL85998_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=587bp|location=Sequence derived from alignment at Sc0000009:3583341..3583927+ (Branchiostoma lanceolatum)
CGAACAGTGCCGGTTACAATGGAGCAAAGTACGCTGACATCTACTCTTAA
AGAGACCACAGTTCATGATGAGACAACGGTACAGACCAGTACTGAAGGAT
CTCCTACAACAATGAAGAGCACGACAGTCGTACCAACTACCCCTTACACC
ACGGAAAAGCCGTCAACAATACACACAACAGGGCGTACCACTACTCTCTT
GTCCTCAACTGGTCCATTGACTACTACTGAGGAAACAACTGCTGACGAAT
CTACGCAGATAACAACCATATCAACAACAAGTAAACCAAGTACAGCAATG
AACACTGAAGCAACTACGGAGGCATCTACAGAAACACCGACCACATTGCC
GGAAACAACTGTATCAACCACTGCAGACCATACCACTCATACTTCAAGAA
AGAGCACCACGGGTTTTTCAAGTACTTCTTACACCACTGATAAACCGTCA
ACAACATATAAAGATATACAATCGACTTCTTCAGGGAAAACAACTGCAGA
CCAATCTACTCTGGTGACAACAACTTTGACCACAACAAAGCAACCAAGTA
CAGCGATGACCACAGAAGCAACGACGGAGATGTCTAC

Coding sequence (CDS) from alignment at Sc0000009:3583341..3583927+

>transcript:BL85998_cuf0 ID=transcript:BL85998_cuf0|Name=transcript:BL85998_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=585bp|location=Sequence derived from alignment at Sc0000009:3583341..3583927+ (Branchiostoma lanceolatum)
CGAACAGTGCCGGTTACAATGGAGCAAAGTACGCTGACATCTACTCTTAA
AGAGACCACAGTTCATGATGAGACAACGGTACAGACCAGTACTGAAGGAT
CTCCTACAACAATGAAGAGCACGACAGTCGTACCAACTACCCCTTACACC
ACGGAAAAGCCGTCAACAATACACACAACAGGGCGTACCACTACTCTCTT
GTCCTCAACTGGTCCATTGACTACTACTGAGGAAACAACTGCTGACGAAT
CTACGCAGATAACAACCATATCAACAACAAGTAAACCAAGTACAGCAATG
AACACTGAAGCAACTACGGAGGCATCTACAGAAACACCGACCACATTGCC
GGAAACAACTGTATCAACCACTGCAGACCATACCACTCATACTTCAAGAA
AGAGCACCACGGGTTTTTCAAGTACTTCTTACACCACTGATAAACCGTCA
ACAACATATAAAGATATACAATCGACTTCTTCAGGGAAAACAACTGCAGA
CCAATCTACTCTGGTGACAACAACTTTGACCACAACAAAGCAACCAAGTA
CAGCGATGACCACAGAAGCAACGACGGAGATGTCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85998gene:BL85998Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85998_cuf0-E1BL85998_cuf0-E1-1564476830-91794Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85998_cuf0transcript:BL85998_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000009genomeSc0000009:3583341..3583927 +
Properties
Property NameValue
Transcript idBL85998_cuf0
Biotypeprotein_coding