transcript:BL85630_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85630_cuf0
Unique Nametranscript:BL85630_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85630_cuf0

>transcript:BL85630_cuf0-protein ID=transcript:BL85630_cuf0-protein|Name=transcript:BL85630_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=115bp
AQKPREGKPCTEIQGRKTMHRNPGKENPAQKPWEGKPGTKTQGRKTLQNP
RERKPYTETQGRKTLHRNPGKENPAQKPREGKSCTKTQGKPYTDSSRSVK
DIKVKSVLNGKEICK
Run BLAST on NCBI

mRNA from alignment at Sc0000087:799245..799913-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85630_cuf0 ID=transcript:BL85630_cuf0|Name=transcript:BL85630_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=669bp|location=Sequence derived from alignment at Sc0000087:799245..799913- (Branchiostoma lanceolatum)
NTGCACAGAAACCCAGGGAAGGAAAACCCTGCACAGAAATCCAGGGAAGG
AAAACCATGCACAGAAACCCAGGGAAGGAAAACCCTGCACAGAAACCCTG
GGAAGGAAAACCCGGCACAAAAACCCAGGGAAGGAAAACCCTGCAAAACC
CCAGGGAAAGAAAACCCTACACAGAAACCCAGGGAAGGAAAACCCTGCAC
AGAAACCCAGGGAAGGAAAACCCTGCACAGAAACCCAGGGAAGGAAAATC
CTGCACAAAAACCCAGGGAAAACCCTACACAGATTCTTCTAGATCTGTAA
AAGACATTAAGGTGAAATCAGTGCTGAATGGAAAAGAAATATGTAAGTGA
GGGTTGAGGCTGTATGGATTGAATAATTATGTTTGTTCAGTCGGCACAAA
CTTGTGCCTGGATGCTGTTTATACCTTCTATTATTGTGCATTGGCTGCAG
TTAACTTGACCTCCACTGAATGTCATACAAATGTGAGCTTTATAATGGAA
TGTGCCAGCAAACAAATTCAATTTTTGTACATTGCTTGTGCCCGTCACAA
TATGACAGTGTAATAGTAATAAGGACTCCTAACTAATTTACGGAACACAT
AAATGTACAGTCTCTTTGAACTGAAATCAATTTTTTTGCTGGCTGAAGTT
TGATGATAGAGAATACAGG

Coding sequence (CDS) from alignment at Sc0000087:799245..799913-

>transcript:BL85630_cuf0 ID=transcript:BL85630_cuf0|Name=transcript:BL85630_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=348bp|location=Sequence derived from alignment at Sc0000087:799245..799913- (Branchiostoma lanceolatum)
GCACAGAAACCCAGGGAAGGAAAACCCTGCACAGAAATCCAGGGAAGGAA
AACCATGCACAGAAACCCAGGGAAGGAAAACCCTGCACAGAAACCCTGGG
AAGGAAAACCCGGCACAAAAACCCAGGGAAGGAAAACCCTGCAAAACCCC
AGGGAAAGAAAACCCTACACAGAAACCCAGGGAAGGAAAACCCTGCACAG
AAACCCAGGGAAGGAAAACCCTGCACAGAAACCCAGGGAAGGAAAATCCT
GCACAAAAACCCAGGGAAAACCCTACACAGATTCTTCTAGATCTGTAAAA
GACATTAAGGTGAAATCAGTGCTGAATGGAAAAGAAATATGTAAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85630gene:BL85630Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85630_cuf0-E1BL85630_cuf0-E1-1564476830-286203Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85630_cuf0transcript:BL85630_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000087genomeSc0000087:799245..799913 -
Properties
Property NameValue
Transcript idBL85630_cuf0
Biotypeprotein_coding