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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85625_cuf0 >transcript:BL85625_cuf0-protein ID=transcript:BL85625_cuf0-protein|Name=transcript:BL85625_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=619bp
MSATMDLNVSTVMFYVFFKGDLPAREFEAGQQRGGHYPCSCGAHVSRFDD
IEYTFRLPHSSFADQIQVLRDGEVTQKTMNGMSAVDHMSKAELIQELSSR
SLLDIHEGRAMPVKDLQAMLKEELHGLKRPPALLFNCPESSLDSLNLDWY
EVLPCEPLHDISHHIQNLFDELPFHVPADIRQEIKQVYNATLGNREIKRG
SDFRVSLIMLVNALDGKASTIVMELLSSLLEIQRICYLPAEKLSQQEILR
LHNHTFLHATCLRKVIPKPRKLTHRCLYGSYYHSLVTHAPTVFRIVPLSS
THTESEERIFNKLRGIVRTTGSGGNPGPVIGNMLVREFCENKLQADRDRT
PYHSSIVSKAARSQRKENEDTFFPSHVISNYPKAWQAHCERIADFLLCGE
GVWWTAGEQGVTFHDSSSRPGNAAKEPRILHFRSCSLKTVDKHLRDSWKR
CLSEDIILPLKKLYIYEEDGSLKGIQWTKFLATPNSTENSSENSSESSSE
SSSERSSENSSENSSENSTERSTENVTENVTENGDDENSSKKGSQNLTEE
EGSEVLAQVQESTDSIPALDQADTCCSQEASRTSHHSHQSTVSSVENQSR
WTQSLQALLGDKRWKLLTA Run BLAST on NCBI mRNA from alignment at Sc0000087:803173..807559- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85625_cuf0 ID=transcript:BL85625_cuf0|Name=transcript:BL85625_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4387bp|location=Sequence derived from alignment at Sc0000087:803173..807559- (Branchiostoma lanceolatum)
ATCGGGACTTGGCTGAGTCTTTTAACAAGCGCATAAGCAAGAACAAAGTA
ACAAAAACATTTTTTGAGACAAATCCTGTGCTAAATGCTACGTTCGACCC
CCGGAAAGCTGACATAAAAGAGGCAGCCAATCAGTGGTACCAAGATGGTG
ATAAGACATTCCGCTCTTTCTACGGAGTGCAGTTAGCTGAAGCCTTGGTG
CATGTCCCCGAAATGCAAGAAGCTTTTAGCCATCAAAACACAGTGACCCC
AGTCAAAACAGTGGCCGTCAACATCACCAAGAACATTGAGCAACTTAGCA
AGACAAAAACTATGACGTCATTGTACATCAGGGAACGCGGGAGTCAGATG
CGAAATATGAGGAACGTCGGCTGCCTCTCAACTATGAGACTACAGAAAGT
GCAAAGAAGCGGGCTCGAGAAAACTTGGCCAAGGAGACCACTGGAAAAAA
AAAGAAACGGCGAAGGGTTGGAGGAGCGAAAAAAGGGGGAACTTGGGACT
GGAAGAGCATCAAACAAGAGGTTGCGTCATGGCCTAATGATAAGGAGGTC
AGCTGGAGGGCCTACGCCAAGGAAAAGGGGGTGCACAACAAAAAAGGTGA
ACATGCAAGAAATGGTGGCCAGATCATCCAGGACTGGCTGATCGGAGAAG
GCATAAACATTCACAGGTTCAAGACGGCAGCAGCCACCACACCAAGACAC
CGCAGAAGTAAGAAACGTATTCAATACTCAGAGTCAGATGTCTGCATGCC
AGTACCCCGGTCAGCCAAAAAGATGAGGCAGAGTCTGTCAACTATGATTG
CAGTTGGAGAGATCCCCATTGGGGAAAGGATCGTACCAAAGGAATTTGAC
AAAATGGTAATTGACAAAGATACTGGAAAGGTGAAGGTGGAAAGATTCAC
AGTTGAAGGCAGGAAACACCCTCTGGCAGAGGTCAGAGCAAGGACACTGC
AAGAACAGAAGAAGTACATGAGAATCAGGACAGATGAAGAGTATAATGAA
ATGACTGCAAATGCCGTCAAAGACAGACTTCGTGAACTTGGGGAATACAG
AGAAGAGGACTGTATCACCAACATGCGGAACAAACTTAAGCAAAAGGAAC
GCACACGGTATATATCAATATGGGAGAACAGTAGTCAGATCTCAAATCAT
GGGCATATTGTGTACATGGCACATACGACATATGATGCTGCTATTCACCT
CACACCCGAAGAATATTAGAAAATGGATGGAGAAACCGTCAATGTCCAGT
CCCATGTGGAAAAGCCGCGCATACACCTAATTGCACGATGCAGTTCAACC
GACCTGGATCAACTCTGCTACTGTGCCGAAAGACGGAAATGCATTCGCGA
AATGAATAAGCCACTGAATGTCAGCCACAATGGATCTGAATGTGAGTACC
GTGATGTTCTACGTTTTTTTCAAAGGCGATCTCCCTGCAAGGGAGTTTGA
AGCTGGGCAGCAGCGAGGTGGTCACTATCCGTGTTCTTGTGGTGCACATG
TTTCTCGTTTTGACGACATCGAATACACGTTTCGTCTACCACACAGCTCC
TTCGCAGATCAGATCCAGGTCCTTAGGGATGGCGAAGTAACACAGAAGAC
CATGAATGGAATGTCTGCGGTGGATCACATGTCCAAAGCTGAGCTGATAC
AGGAGCTGTCCTCTCGTAGCCTGCTTGATATACATGAAGGTAGAGCAATG
CCAGTTAAGGACTTGCAAGCAATGCTTAAAGAAGAACTGCATGGCCTTAA
ACGCCCACCAGCACTGTTATTCAACTGTCCTGAATCATCTCTTGACAGTC
TCAACTTGGATTGGTACGAGGTACTTCCGTGTGAACCTCTACACGACATA
TCACACCACATCCAGAACTTGTTTGATGAACTTCCTTTTCATGTACCGGC
TGACATTCGACAAGAAATCAAGCAAGTTTACAATGCTACTTTAGGTAACA
GAGAGATCAAGAGAGGCAGCGACTTCAGAGTATCATTGATCATGCTGGTG
AACGCATTAGATGGGAAAGCTTCTACGATTGTCATGGAACTGCTTTCCTC
GCTGCTTGAGATACAACGAATCTGTTACTTGCCCGCTGAAAAACTATCCC
AGCAAGAAATCCTACGCCTTCACAACCATACATTTCTCCATGCTACGTGC
CTTCGTAAAGTAATCCCAAAGCCAAGGAAGTTAACACATCGTTGTTTGTA
TGGAAGCTACTACCACTCATTGGTTACCCACGCCCCAACTGTGTTCCGGA
TTGTGCCACTGAGTTCCACCCACACCGAATCAGAAGAGAGAATCTTCAAC
AAGCTCCGTGGCATCGTTCGCACGACTGGTTCTGGTGGGAACCCTGGCCC
AGTCATCGGAAACATGCTGGTTCGTGAGTTCTGCGAGAACAAACTGCAGG
CTGACAGAGATCGTACACCTTACCACTCAAGCATCGTTTCTAAGGCAGCA
AGATCCCAAAGAAAGGAGAACGAGGACACCTTCTTTCCAAGTCATGTGAT
CAGTAACTACCCAAAGGCATGGCAAGCACACTGCGAGCGGATTGCTGACT
TCCTATTGTGTGGGGAAGGTGTATGGTGGACAGCAGGAGAACAGGGTGTT
ACGTTTCATGACTCATCATCTCGTCCTGGAAATGCAGCTAAAGAGCCAAG
AATCCTCCACTTCAGAAGCTGCAGTCTCAAAACAGTTGACAAGCACCTAC
GCGACTCATGGAAGCGATGCCTAAGTGAAGATATAATACTTCCACTAAAA
AAACTGTACATATATGAAGAAGATGGAAGCTTGAAGGGGATACAGTGGAC
AAAGTTCCTTGCCACACCCAATAGCACCGAGAACAGCAGCGAGAACAGCA
GTGAGAGCAGCAGCGAGAGCAGTAGTGAGAGGAGCAGCGAGAACAGCAGC
GAGAACAGCAGCGAGAACAGCACTGAGAGGAGCACTGAGAACGTCACAGA
GAACGTCACAGAGAACGGTGATGATGAGAACAGCAGTAAGAAAGGCAGTC
AGAACTTGACGGAAGAGGAGGGTTCAGAAGTTCTGGCACAGGTGCAGGAG
AGTACTGACAGCATCCCTGCACTTGATCAGGCGGACACTTGCTGCAGGTT
AGTTCAAATTCATTATAGATGCTATATTGTAAGTTGTAAAAATGTCCAAC
TAGATACAAAATGCAACTTTTCTACAGACATGATTATGAAAATGAGTTTT
TAAATTGATACATTCAGATTAGAGTGCTCAAGTTTAAACAGAATCAATGG
TACAGGCTAAATATTCATAGAATCATATACTTTCCCCCAGCAAGTACTAT
GACAATAACTGTATGATCCTTTCTTATAGAGTCAGCAAAACAAATTTGAT
GAAATCCACATCCTGATAGATCCTTACATTAAATTTTGTGATTCTAATTG
TGTCTTACAGCCAGGAAGCAAGTAGGACTAGTCATCACTCTCATCAATCG
ACAGTTAGTAGTGTGGAGAACCAGTCACGCTGGACTCAAAGTCTGCAAGC
CCTCCTTGGAGACAAAAGGTGGAAACTTTTGACTGCCTAAGGAAGAGGAT
GAAGCAGAACCATGTTAGCAAAGAGACCAAGGAAAAGTATGACAAGACAG
TGGCATTCTTGCAAATTGAAGTTGGCAAATGTCATTCTGTGTTAAAAACT
GATGTGGGAAAGTGGGAAAGGGACTTTATGTCCAATCATGACTGCGCTTG
TCCCACATTGAAAGACAAAGAAGAAGCACCTCATGTCAAACTAATGTATC
ATAATATCAAGATAGCGAGAGCAGTTATGAGGGCATTTGGAATGAAGGAC
TTTTAGATTGGTAGACATTGCTAGCATGTGTACCATCTTCTCCTGCTAGC
CAGAATGGTATCAAATTGGCCGACAATATCAAACAGACTGTCGTGTACAT
TGGAGTCTGGTCTTGTTCATAGACAGAATGGCTGGAATTGCATACGCGTT
CAGACTTTGAACGAGCCAGCTGATTGGTCCTAATTGTCTAAGCCCTCTTG
TGGGAGGGCTTTCTTATCATCATCAACATGCTAAGACTCTGTGGTTAGCC
AGTTGGATACTTTCGGTCAATTTGATAGTACTGTTCTGGCTAGCAAACTA
TGGATGATTGTACCCAGGCTAAGAGACAACGCAGACCCAGGGAAGGAAAA
CCCTGCACAGAAACCCAGGCCTAGGGAAGGAAAACCCTGCACAAAAACCC
CGGGAAGGAAAACCCTGCACTAAAAACCAGGGAAGGAAATTCTTACGCAG
AAACCCCGGGAAGGAAAACCCTACACAGAAACCCTGGGAAGGAAAACCCT
GCACAGAAGCCCAGGGAAGGAAAACCCTACCCAGAAACCCTGGGAAGGAA
AACCCTACACAGAAACCCTGGGAAGGAAAACCCTNNN Coding sequence (CDS) from alignment at Sc0000087:803173..807559- >transcript:BL85625_cuf0 ID=transcript:BL85625_cuf0|Name=transcript:BL85625_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3720bp|location=Sequence derived from alignment at Sc0000087:803173..807559- (Branchiostoma lanceolatum)
ATGTCAGCCACAATGGATCTGAATGTGAGTACCGTGATGTTCTACGTTTT
TTTCAAAGGCGATCTCCCTGCAAGGGAGTTTGAAGCTGGGCAGCAGCGAG
GTGGTCACTATCCGTGTTCTTGTGGTGCACATGTTTCTCGTTTTGACGAC
ATCGAATACACGTTTCGTCTACCACACAGCTCCTTCGCAGATCAGATCCA
GGTCCTTAGGGATGGCGAAGTAACACAGAAGACCATGAATGGAATGTCTG
CGGTGGATCACATGTCCAAAGCTGAGCTGATACAGGAGCTGTCCTCTCGT
AGCCTGCTTGATATACATGAAGGTAGAGCAATGCCAGTTAAGGACTTGCA
AGCAATGCTTAAAGAAGAACTGCATGGCCTTAAACGCCCACCAGCACTGT
TATTCAACTGTCCTGAATCATCTCTTGACAGTCTCAACTTGGATTGGTAC
GAGGTACTTCCGTGTGAACCTCTACACGACATATCACACCACATCCAGAA
CTTGTTTGATGAACTTCCTTTTCATGTACCGGCTGACATTCGACAAGAAA
TCAAGCAAGTTTACAATGCTACTTTAGGTAACAGAGAGATCAAGAGAGGC
AGCGACTTCAGAGTATCATTGATCATGCTGGTGAACGCATTAGATGGGAA
AGCTTCTACGATTGTCATGGAACTGCTTTCCTCGCTGCTTGAGATACAAC
GAATCTGTTACTTGCCCGCTGAAAAACTATCCCAGCAAGAAATCCTACGC
CTTCACAACCATACATTTCTCCATGCTACGTGCCTTCGTAAAGTAATCCC
AAAGCCAAGGAAGTTAACACATCGTTGTTTGTATGGAAGCTACTACCACT
CATTGGTTACCCACGCCCCAACTGTGTTCCGGATTGTGCCACTGAGTTCC
ACCCACACCGAATCAGAAGAGAGAATCTTCAACAAGCTCCGTGGCATCGT
TCGCACGACTGGTTCTGGTGGGAACCCTGGCCCAGTCATCGGAAACATGC
TGGTTCGTGAGTTCTGCGAGAACAAACTGCAGGCTGACAGAGATCGTACA
CCTTACCACTCAAGCATCGTTTCTAAGGCAGCAAGATCCCAAAGAAAGGA
GAACGAGGACACCTTCTTTCCAAGTCATGTGATCAGTAACTACCCAAAGG
CATGGCAAGCACACTGCGAGCGGATTGCTGACTTCCTATTGTGTGGGGAA
GGTGTATGGTGGACAGCAGGAGAACAGGGTGTTACGTTTCATGACTCATC
ATCTCGTCCTGGAAATGCAGCTAAAGAGCCAAGAATCCTCCACTTCAGAA
GCTGCAGTCTCAAAACAGTTGACAAGCACCTACGCGACTCATGGAAGCGA
TGCCTAAGTGAAGATATAATACTTCCACTAAAAAAACTGTACATATATGA
AGAAGATGGAAGCTTGAAGGGGATACAGTGGACAAAGTTCCTTGCCACAC
CCAATAGCACCGAGAACAGCAGCGAGAACAGCAGTGAGAGCAGCAGCGAG
AGCAGTAGTGAGAGGAGCAGCGAGAACAGCAGCGAGAACAGCAGCGAGAA
CAGCACTGAGAGGAGCACTGAGAACGTCACAGAGAACGTCACAGAGAACG
GTGATGATGAGAACAGCAGTAAGAAAGGCAGTCAGAACTTGACGGAAGAG
GAGGGTTCAGAAGTTCTGGCACAGGTGCAGGAGAGTACTGACAGCATCCC
TGCACTTGATCAGGCGGACACTTGCTGCAGCCAGGAAGCAAGTAGGACTA
GTCATCACTCTCATCAATCGACAGTTAGTAGTGTGGAGAACCAGTCACGC
TGGACTCAAAGTCTGCAAGCCCTCCTTGGAGACAAAAGGTGGAAACTTTT
GACTGCCTAAATGTCAGCCACAATGGATCTGAATGTGAGTACCGTGATGT
TCTACGTTTTTTTCAAAGGCGATCTCCCTGCAAGGGAGTTTGAAGCTGGG
CAGCAGCGAGGTGGTCACTATCCGTGTTCTTGTGGTGCACATGTTTCTCG
TTTTGACGACATCGAATACACGTTTCGTCTACCACACAGCTCCTTCGCAG
ATCAGATCCAGGTCCTTAGGGATGGCGAAGTAACACAGAAGACCATGAAT
GGAATGTCTGCGGTGGATCACATGTCCAAAGCTGAGCTGATACAGGAGCT
GTCCTCTCGTAGCCTGCTTGATATACATGAAGGTAGAGCAATGCCAGTTA
AGGACTTGCAAGCAATGCTTAAAGAAGAACTGCATGGCCTTAAACGCCCA
CCAGCACTGTTATTCAACTGTCCTGAATCATCTCTTGACAGTCTCAACTT
GGATTGGTACGAGGTACTTCCGTGTGAACCTCTACACGACATATCACACC
ACATCCAGAACTTGTTTGATGAACTTCCTTTTCATGTACCGGCTGACATT
CGACAAGAAATCAAGCAAGTTTACAATGCTACTTTAGGTAACAGAGAGAT
CAAGAGAGGCAGCGACTTCAGAGTATCATTGATCATGCTGGTGAACGCAT
TAGATGGGAAAGCTTCTACGATTGTCATGGAACTGCTTTCCTCGCTGCTT
GAGATACAACGAATCTGTTACTTGCCCGCTGAAAAACTATCCCAGCAAGA
AATCCTACGCCTTCACAACCATACATTTCTCCATGCTACGTGCCTTCGTA
AAGTAATCCCAAAGCCAAGGAAGTTAACACATCGTTGTTTGTATGGAAGC
TACTACCACTCATTGGTTACCCACGCCCCAACTGTGTTCCGGATTGTGCC
ACTGAGTTCCACCCACACCGAATCAGAAGAGAGAATCTTCAACAAGCTCC
GTGGCATCGTTCGCACGACTGGTTCTGGTGGGAACCCTGGCCCAGTCATC
GGAAACATGCTGGTTCGTGAGTTCTGCGAGAACAAACTGCAGGCTGACAG
AGATCGTACACCTTACCACTCAAGCATCGTTTCTAAGGCAGCAAGATCCC
AAAGAAAGGAGAACGAGGACACCTTCTTTCCAAGTCATGTGATCAGTAAC
TACCCAAAGGCATGGCAAGCACACTGCGAGCGGATTGCTGACTTCCTATT
GTGTGGGGAAGGTGTATGGTGGACAGCAGGAGAACAGGGTGTTACGTTTC
ATGACTCATCATCTCGTCCTGGAAATGCAGCTAAAGAGCCAAGAATCCTC
CACTTCAGAAGCTGCAGTCTCAAAACAGTTGACAAGCACCTACGCGACTC
ATGGAAGCGATGCCTAAGTGAAGATATAATACTTCCACTAAAAAAACTGT
ACATATATGAAGAAGATGGAAGCTTGAAGGGGATACAGTGGACAAAGTTC
CTTGCCACACCCAATAGCACCGAGAACAGCAGCGAGAACAGCAGTGAGAG
CAGCAGCGAGAGCAGTAGTGAGAGGAGCAGCGAGAACAGCAGCGAGAACA
GCAGCGAGAACAGCACTGAGAGGAGCACTGAGAACGTCACAGAGAACGTC
ACAGAGAACGGTGATGATGAGAACAGCAGTAAGAAAGGCAGTCAGAACTT
GACGGAAGAGGAGGGTTCAGAAGTTCTGGCACAGGTGCAGGAGAGTACTG
ACAGCATCCCTGCACTTGATCAGGCGGACACTTGCTGCAGCCAGGAAGCA
AGTAGGACTAGTCATCACTCTCATCAATCGACAGTTAGTAGTGTGGAGAA
CCAGTCACGCTGGACTCAAAGTCTGCAAGCCCTCCTTGGAGACAAAAGGT
GGAAACTTTTGACTGCCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000087 | genome | Sc0000087:803173..807559 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85625_cuf0 |
| Biotype | protein_coding |
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