transcript:BL85454_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85454_cuf0
Unique Nametranscript:BL85454_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85454_cuf0

>transcript:BL85454_cuf0-protein ID=transcript:BL85454_cuf0-protein|Name=transcript:BL85454_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=267bp
EAKKLFIRPLDYVIEVWNWMELFIVALGCSTLGVYLYTQGIIDDVSEQNA
VGNSTFDQYKVAADWFQVYTYLLGLLICCITLKFLRILRFNSHVHALSMT
MKKSFKPVAQFMAMAGVVVVAFTLMANLVFGIKLESFIDILTSLQSLLLM
MLGSFDFESLSEGNRVLGPLMFFSYQVMMQFILLSMFMTIIMDVNAQQGD
QTPPDDVKFVSFIREKASEATVKAKAIPSGIRSFESHIQDTSPDMLENVG
HGLDRLDKYSSRYDSTL
Run BLAST on NCBI

mRNA from alignment at Sc0000162:346106..350218-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85454_cuf0 ID=transcript:BL85454_cuf0|Name=transcript:BL85454_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4113bp|location=Sequence derived from alignment at Sc0000162:346106..350218- (Branchiostoma lanceolatum)
GGAAGGTGAAAACTTCTGATATCGTGTGCTTCACGTTTAAACCAACCAAC
AGACAAACAAGCAAACAAACACACACAGACTCAGACGACCACAAACACAT
ACAATAACAAACTTGAACTCACCTCACCTATCCCGTGACCTCCTACCGGG
TCGTTTGGGCACCAGGCGGCACTATCCCCCTCTACCTAGCCCTGTCCTCA
GCTACATACGCGAACACACCGCCATACTACATTTGACTAGTTACAAATCT
ATAAATTTACCTCCAAATCAAGCCGTGCGATATTACTAGAAATCGATTTT
TGTACTTTGTGACCTGCCACTTATGAAATATAGAGGCCAATCATTAATAG
CTTTGAGAGAGAAAAAACATTTTGATCAATAAGTTACTTAGAGTTTATAC
ATATGTTCTATTTACCACAGCCAAAAAGCTATTCATCCGACCGCTGGATT
ATGTTATTGAGGTCTGGAACTGGATGGAGCTCTTCATCGTTGCCCTTGGT
TGTTCCACACTGGGCTGGATAGGCTTGACAAATACAGTTCGCGGTATGAT
AGCACGCTGTAGGCGATCAAACCCTTGCATTGAAAAAACACATATCTTAA
TACCATTGAATAGCCAATGGTAAAAACCTTGCGTCTCAGACAACACTACG
CCGTCTTGCTGTTGGTTCTACGAGGCTTCCTGGCCCTCTTTCTGCTGTAC
TTTGCATTTACGGAAGGTGAAAACTTTTGATATCGTGTGCTTCACGTTTA
AACAAACAAACAAACAAACAAACAAACAAACACAGACTCAGACGACCACA
AACACATACAATAACAAATTTGGACTCACCTCACCTATCCCGTGATCTCT
TATTGGGTCGTTGGGGCACCAGGCGGCACCCTCCACCTAGCCCTGTCCTC
AGCTACATACGCGAACACACCGCCATACTACATTTGACTAGCTAGTTATA
AATCTATAAATTCACCTCCTTATCAAGCTGTGCGATATTACTAGAAATCG
ATTTTTGTACTTTGTGACCTGCCACTTATGAAATATAGAGGCCAATCATT
AATAGCTGTGAGAGAAAAAAACACTTTGATCAATAAGTTACATAGAGTTT
ATACATATGTTTTATTTACCACAGCCAAAAAGCTATTCATCCGACCGCTG
GATTATGTTATTGAGATCTGGAACTGGATGGAGCTCTTCATCGTTGCCCT
TGGTTGTTCCACACTCGGTGTCTACCTCTACACGCAAGGCATCATTGATG
ACGTTTCAGAGCAAAACGCAGTCGGCAACTCTACCTTTGACCAGTACAAA
GTTGCTGCCGATTGGTTCCAAGTCTACACCTACCTTCTGGGTCTACTAAT
CTGCTGCATTACGCTTAAGTTTCTTCGCATCCTACGCTTTAACTCTCACG
TGTACGCTTTGTCTATGACGATGAAGAAGTCCTTTAAGCCTGTGGCACAA
TTTATGGCTATGGCCGGAGTTGTCGTAGTAGCTTTCACTCTGATGGCAAA
TTTGGTCTTTGGCATCAAGCTGGAAAGTTTCATAGATATCCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCGCTGGATTATGTTATTGAGGTCTGGAA
CTGGATGGAGCTCTTCATCGTTGCCCTTGGTTGTTCCACACTCGGTGTCT
ACCTCTACACGCAAGGCATCATTGATGACGTTTCAGAGCAAAACGCAGTC
GGCAACTCTACCTTTGACCAGTACAAAGTTGCTGCCGATTGGTTCCAAGT
CTACACCTACCTTCTGGGTCTACTAATCTGCTGTATTACGCTTAAGTTTC
TTCGCATCCTACGCTTTAACTCTCACGTGCACGCTTTGTCTATGACGATG
AAGAAGTCCTTTAAGCCTGTGGCACAATTTATGGCTATGGCCGGAGTTGT
CGTAGTAGCTTTCACTCTGATGGCAAATTTGGTCTTTGGCATCAAGCTGG
AAAGTTTCATAGATATCCTAACAAGTTTACAAAGCCTTCTTTTGATGATG
TTAGGCAGTTTCGACTTCGAAAGTCTTTCTGAAGGAAATAGAGTACTTGG
TCCTCTGATGTTCTTCTCGTATCAAGTCATGATGCAGTTTATACTACTAA
GCATGTTCATGACAATCATTATGGACGTAAATGCACAGCAAGGGGACCAA
ACACCTCCGGACGATGTCAAGTTTGTTTCTTTTATCAGAGAAAAGGCATC
AGAAGCAACTGTAAAAGCAAAAGCCATACCCTCGGGTATAAGATCATTTG
AGTCACATATTCAAGATACCTCTCCAGATATGCTTGAGAATGTAGGCCAT
GGGCTGGATAGGCTTGACAAATACAGTTCGCGGTATGATAGCACGCTGTA
GGCGATCATACCCTTGCATTGAAAAACCACATATCTATAATGCCATTGAA
TAGCCAATGGTAAAAACATGTTTGCCCTCGAAACGATTCTCATCACTTGT
ACAAATGGTAAGTTTGTCGAAACTACTTTCTGGTTAACAATTACTGATAT
TATTTGATAAAACATGTATTTTTTTCATTCAAAATGAGAACAGGTATCAC
TTACATCAAGTATTAAGTACATATATTTTCCCAGATCATTTTACCAAACA
TGTATGTGAAGCAAAACACGCAAGGTCTTACATTCCCAGGTATAAAAGGA
GATGACAAGATGTAAACCTTGTATACATACATTTAATCTAATGTAACAGT
AATACTATCTTATTATTATCTTTTATGTGTGTTAAGATATACAATGTCGT
TATGCTTGTAAACATATCATTGTTTATGGAAACAGCGTTTCCCTGGAGCA
AACGGATATGATAGAGGTGCTTATTTATTAATCTATTCGAATCTAGGCAT
GAAAAACAATACATTTTATTATAATTGTTGCGTTGTTCTGATATACTGTA
CTACAGGCTGATCAAGAAAATTGCACACAAAACATACATATTTACCTTCG
TCATNCACCGCCATACTACATTTGACTAGTTACAAATCTATAAATTTACC
TCCAAATCAAGCTGTGCGATATTACTAGAAATCGATTTTTGTACTTTGTG
ACCTGCCACTTATGAAATATAGAGGCCAATCATGAATAGCTTTGAGAGAG
AAAAAACATTTTGATCAATAAGTTACTTNAAACATACATATTTACCTTCG
TCATTAAATGAAAAAGTAACATAGTATAACAGTAGTAAATGGTGGGAATT
CGGCGGGAGAGAGAGATAACAGTTTAAGGAGAATATTGTAACTGTTTTAG
TGATGAGTAATGCCAATAGAGAATACTGCAAGCTAACTTTGTTGATGCTT
GAACTCATCAAAGAGTTAGAATTATGTATATATGTATGTCAAAGGCGAAT
CAATCAATGTATC

Coding sequence (CDS) from alignment at Sc0000162:346106..350218-

>transcript:BL85454_cuf0 ID=transcript:BL85454_cuf0|Name=transcript:BL85454_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2412bp|location=Sequence derived from alignment at Sc0000162:346106..350218- (Branchiostoma lanceolatum)
GAAGCCAAAAAGCTATTCATCCGACCGCTGGATTATGTTATTGAGGTCTG
GAACTGGATGGAGCTCTTCATCGTTGCCCTTGGTTGTTCCACACTCGGTG
TCTACCTCTACACGCAAGGCATCATTGATGACGTTTCAGAGCAAAACGCA
GTCGGCAACTCTACCTTTGACCAGTACAAAGTTGCTGCCGATTGGTTCCA
AGTCTACACCTACCTTCTGGGTCTACTAATCTGCTGTATTACGCTTAAGT
TTCTTCGCATCCTACGCTTTAACTCTCACGTGCACGCTTTGTCTATGACG
ATGAAGAAGTCCTTTAAGCCTGTGGCACAATTTATGGCTATGGCCGGAGT
TGTCGTAGTAGCTTTCACTCTGATGGCAAATTTGGTCTTTGGCATCAAGC
TGGAAAGTTTCATAGATATCCTAACAAGTTTACAAAGCCTTCTTTTGATG
ATGTTAGGCAGTTTCGACTTCGAAAGTCTTTCTGAAGGAAATAGAGTACT
TGGTCCTCTGATGTTCTTCTCGTATCAAGTCATGATGCAGTTTATACTAC
TAAGCATGTTCATGACAATCATTATGGACGTAAATGCACAGCAAGGGGAC
CAAACACCTCCGGACGATGTCAAGTTTGTTTCTTTTATCAGAGAAAAGGC
ATCAGAAGCAACTGTAAAAGCAAAAGCCATACCCTCGGGTATAAGATCAT
TTGAGTCACATATTCAAGATACCTCTCCAGATATGCTTGAGAATGTAGGC
CATGGGCTGGATAGGCTTGACAAATACAGTTCGCGGTATGATAGCACGCT
GTAGGAAGCCAAAAAGCTATTCATCCGACCGCTGGATTATGTTATTGAGG
TCTGGAACTGGATGGAGCTCTTCATCGTTGCCCTTGGTTGTTCCACACTC
GGTGTCTACCTCTACACGCAAGGCATCATTGATGACGTTTCAGAGCAAAA
CGCAGTCGGCAACTCTACCTTTGACCAGTACAAAGTTGCTGCCGATTGGT
TCCAAGTCTACACCTACCTTCTGGGTCTACTAATCTGCTGTATTACGCTT
AAGTTTCTTCGCATCCTACGCTTTAACTCTCACGTGCACGCTTTGTCTAT
GACGATGAAGAAGTCCTTTAAGCCTGTGGCACAATTTATGGCTATGGCCG
GAGTTGTCGTAGTAGCTTTCACTCTGATGGCAAATTTGGTCTTTGGCATC
AAGCTGGAAAGTTTCATAGATATCCTAACAAGTTTACAAAGCCTTCTTTT
GATGATGTTAGGCAGTTTCGACTTCGAAAGTCTTTCTGAAGGAAATAGAG
TACTTGGTCCTCTGATGTTCTTCTCGTATCAAGTCATGATGCAGTTTATA
CTACTAAGCATGTTCATGACAATCATTATGGACGTAAATGCACAGCAAGG
GGACCAAACACCTCCGGACGATGTCAAGTTTGTTTCTTTTATCAGAGAAA
AGGCATCAGAAGCAACTGTAAAAGCAAAAGCCATACCCTCGGGTATAAGA
TCATTTGAGTCACATATTCAAGATACCTCTCCAGATATGCTTGAGAATGT
AGGCCATGGGCTGGATAGGCTTGACAAATACAGTTCGCGGTATGATAGCA
CGCTGTAGGAAGCCAAAAAGCTATTCATCCGACCGCTGGATTATGTTATT
GAGGTCTGGAACTGGATGGAGCTCTTCATCGTTGCCCTTGGTTGTTCCAC
ACTCGGTGTCTACCTCTACACGCAAGGCATCATTGATGACGTTTCAGAGC
AAAACGCAGTCGGCAACTCTACCTTTGACCAGTACAAAGTTGCTGCCGAT
TGGTTCCAAGTCTACACCTACCTTCTGGGTCTACTAATCTGCTGTATTAC
GCTTAAGTTTCTTCGCATCCTACGCTTTAACTCTCACGTGCACGCTTTGT
CTATGACGATGAAGAAGTCCTTTAAGCCTGTGGCACAATTTATGGCTATG
GCCGGAGTTGTCGTAGTAGCTTTCACTCTGATGGCAAATTTGGTCTTTGG
CATCAAGCTGGAAAGTTTCATAGATATCCTAACAAGTTTACAAAGCCTTC
TTTTGATGATGTTAGGCAGTTTCGACTTCGAAAGTCTTTCTGAAGGAAAT
AGAGTACTTGGTCCTCTGATGTTCTTCTCGTATCAAGTCATGATGCAGTT
TATACTACTAAGCATGTTCATGACAATCATTATGGACGTAAATGCACAGC
AAGGGGACCAAACACCTCCGGACGATGTCAAGTTTGTTTCTTTTATCAGA
GAAAAGGCATCAGAAGCAACTGTAAAAGCAAAAGCCATACCCTCGGGTAT
AAGATCATTTGAGTCACATATTCAAGATACCTCTCCAGATATGCTTGAGA
ATGTAGGCCATGGGCTGGATAGGCTTGACAAATACAGTTCGCGGTATGAT
AGCACGCTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85454gene:BL85454Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85454_cuf0transcript:BL85454_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85454_cuf0-E1BL85454_cuf0-E1-1564476830-358241Branchiostoma lanceolatumexon
BL85454_cuf0-E2BL85454_cuf0-E2-1564476830-358238Branchiostoma lanceolatumexon
BL85454_cuf0-E3BL85454_cuf0-E3-1564476830-358236Branchiostoma lanceolatumexon
BL85454_cuf0-E4BL85454_cuf0-E4-1564476830-358233Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000162genomeSc0000162:346106..350218 -
Properties
Property NameValue
Transcript idBL85454_cuf0
Biotypeprotein_coding