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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85417_cuf2 >transcript:BL85417_cuf2-protein ID=transcript:BL85417_cuf2-protein|Name=transcript:BL85417_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=339bp
MAFSDNTNECENDARTKVMSSLKAAKGILLSLISAICFAFSGEFTALASK
DGIPSFQIIFLKRFIELCTVVPIVAFSRPRLTGENRHQNIILLVFVIVSN
VGNAVVHLSFTYTVPGIAFGIIKGSVPFFVACIGFLFLKEHVSLFEGSAI
LISVTGVVLVAVGMTHIAAISTKLLMLSIGFPLFAAFPLALDTVIIRYLT
AKLGMPMFTSLLYQDFIGAVALLGITYAAETPVWTMSLRTALYVVGLGVS
KSLASIFLFESLKEVKAYTSTAVGIFVIPITILLDYLFMQKVPNSLQVAG
VAFVMLGVLLVSVYTWWTSRQKELKRTFLETLNFDPDER Run BLAST on NCBI mRNA from alignment at Sc0000839:28668..30628+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85417_cuf2 ID=transcript:BL85417_cuf2|Name=transcript:BL85417_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1961bp|location=Sequence derived from alignment at Sc0000839:28668..30628+ (Branchiostoma lanceolatum)
TATAATTTTTGCTTCTTGTTTTGCGTCAATGACAGGAAAGATAATTGATA
ACAGCCCCCAAATGCATGTAGCCAGTGGAGATGCAAACGTCATACAATGG
GGGAGTATATATATATATATATATATATATATNGCCGGTGAAGGAATGAG
TGTGATTGTTGATATGGCTGTATGTTATGACTTGATGAAGACTGGTGATC
AGGAGCTAAACAATTTGTTTAGATATTAATAGGTACGTTTTCCATATACA
GAAGAGAAGGAGCATCATCACCCGCCTGCTGTGCTGTAACGTCAAGAACA
CTCAGAGAAGGAGAGAGCATTACATCTTCAGTTTACTGATAGAGGACATC
AGCGCGGTTGTAGCTTCCTGACGACAGAAGGCATCAGCGAAGCTGTGCGT
TTCTGAAAGAGGGCATCAACCACGTTGCAGCAGTCTTCGAGAATGTCATC
GGCAGGTCAAGTTCTCATCAGGAGTGACCAGAGCTAGAGAAAACAGATGG
AAACGGACAGAATAACTCAAGACAACAGTCGTCATTGACCTACAAAACTC
TTGAACATTTAGAGAAATAGATAATTGGAGATAGAAATCGTACAGGGCTA
CATGTTCCAGTCTATGTATAGGAATGAAATTTCACATGTTACATCACGAA
TACAGGAGTTAAATTGTATTCAATTTGATACTACGTGAAAGTAACATCTA
CTGTTACAGAAAAAATCACTCCGGTGCTTTGATAAATTTTCAATCAATCA
TAAGGAAGCACGAGTGCGAGAACCAGGCAAAATGGCATTTTCGGACAACA
CTAACGAATGTGAAAATGATGCAAGGACAAAGGTAATGTCTTCGTTGAAG
GCAGCAAAAGGCATTTTACTGAGCCTCATATCAGCCATTTGTTTCGCTTT
CTCCGGTGAATTCACAGCACTGGCAAGCAAGGATGGCATCCCGAGTTTCC
AAATAATCTTCCTTAAACGATTCATCGAGCTTTGTACAGTTGTCCCTATT
GTAGCATTCAGTCGGCCAAGATTAACAGGTGAAAACAGACATCAGAACAT
TATACTACTCGTCTTTGTGATTGTCTCAAATGTTGGAAACGCAGTGGTCC
ATCTATCTTTTACCTACACTGTTCCTGGCATCGCCTTTGGCATCATAAAA
GGTTCGGTGCCTTTCTTCGTAGCCTGTATCGGATTTCTATTCTTAAAGGA
ACATGTCTCTCTTTTTGAGGGTAGTGCAATTCTCATTAGCGTAACAGGAG
TTGTTTTAGTGGCGGTTGGTATGACGCATATAGCTGCAATATCCACCAAG
CTACTTATGTTGTCAATTGGTTTTCCACTGTTTGCTGCGTTCCCCTTGGC
TCTTGACACTGTTATCATTCGGTACCTGACAGCTAAACTAGGTATGCCAA
TGTTCACATCTTTGCTGTATCAAGATTTTATTGGGGCAGTAGCATTACTT
GGTATAACCTACGCGGCAGAGACTCCAGTCTGGACAATGTCGTTGCGAAC
AGCGTTATACGTGGTAGGACTCGGGGTGAGCAAGAGTCTTGCGAGCATAT
TCCTCTTTGAATCCTTGAAAGAAGTAAAGGCATACACGTCAACAGCAGTG
GGAATATTTGTCATCCCTATCACTATCCTACTAGACTACTTGTTTATGCA
GAAAGTACCGAATTCCCTCCAAGTTGCGGGCGTGGCCTTTGTGATGTTAG
GGGTACTGTTAGTTAGCGTGTATACATGGTGGACCTCTCGTCAGAAGGAG
CTGAAAAGAACATTTCTAGAAACACTCAATTTTGATCCTGACGAGAGATA
GGAGAATTCTAAAGGCAAAGCTCGATGATGTGTCTTTGTTATGTACTCCA
ATTGTCTAACATAGCCCAGGGGAACTTATTTACATTACTAACCCAACTTC
CCTGTAGGAAAGAGATTTAAAACATACTTTTGTAAAGTACGTAGGTAATG
TGCTGTAATCT Coding sequence (CDS) from alignment at Sc0000839:28668..30628+ >transcript:BL85417_cuf2 ID=transcript:BL85417_cuf2|Name=transcript:BL85417_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1020bp|location=Sequence derived from alignment at Sc0000839:28668..30628+ (Branchiostoma lanceolatum)
ATGGCATTTTCGGACAACACTAACGAATGTGAAAATGATGCAAGGACAAA
GGTAATGTCTTCGTTGAAGGCAGCAAAAGGCATTTTACTGAGCCTCATAT
CAGCCATTTGTTTCGCTTTCTCCGGTGAATTCACAGCACTGGCAAGCAAG
GATGGCATCCCGAGTTTCCAAATAATCTTCCTTAAACGATTCATCGAGCT
TTGTACAGTTGTCCCTATTGTAGCATTCAGTCGGCCAAGATTAACAGGTG
AAAACAGACATCAGAACATTATACTACTCGTCTTTGTGATTGTCTCAAAT
GTTGGAAACGCAGTGGTCCATCTATCTTTTACCTACACTGTTCCTGGCAT
CGCCTTTGGCATCATAAAAGGTTCGGTGCCTTTCTTCGTAGCCTGTATCG
GATTTCTATTCTTAAAGGAACATGTCTCTCTTTTTGAGGGTAGTGCAATT
CTCATTAGCGTAACAGGAGTTGTTTTAGTGGCGGTTGGTATGACGCATAT
AGCTGCAATATCCACCAAGCTACTTATGTTGTCAATTGGTTTTCCACTGT
TTGCTGCGTTCCCCTTGGCTCTTGACACTGTTATCATTCGGTACCTGACA
GCTAAACTAGGTATGCCAATGTTCACATCTTTGCTGTATCAAGATTTTAT
TGGGGCAGTAGCATTACTTGGTATAACCTACGCGGCAGAGACTCCAGTCT
GGACAATGTCGTTGCGAACAGCGTTATACGTGGTAGGACTCGGGGTGAGC
AAGAGTCTTGCGAGCATATTCCTCTTTGAATCCTTGAAAGAAGTAAAGGC
ATACACGTCAACAGCAGTGGGAATATTTGTCATCCCTATCACTATCCTAC
TAGACTACTTGTTTATGCAGAAAGTACCGAATTCCCTCCAAGTTGCGGGC
GTGGCCTTTGTGATGTTAGGGGTACTGTTAGTTAGCGTGTATACATGGTG
GACCTCTCGTCAGAAGGAGCTGAAAAGAACATTTCTAGAAACACTCAATT
TTGATCCTGACGAGAGATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000839 | genome | Sc0000839:28668..30628 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85417_cuf2 |
| Biotype | protein_coding |
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