transcript:BL85409_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85409_cuf3
Unique Nametranscript:BL85409_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85409_cuf3

>transcript:BL85409_cuf3-protein ID=transcript:BL85409_cuf3-protein|Name=transcript:BL85409_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
EMCLTEQKTCEKGGGGPVWQQDMCLKALGRSLKTRLKDKQQSWWDPDASS
PQVSELAATAGSSLWAMVLEYMMNPPSLPPFVEQLPPSSPFKTAPSLVT
Run BLAST on NCBI

mRNA from alignment at Sc0000032:1414150..1419365+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85409_cuf3 ID=transcript:BL85409_cuf3|Name=transcript:BL85409_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5216bp|location=Sequence derived from alignment at Sc0000032:1414150..1419365+ (Branchiostoma lanceolatum)
GAAATGTGTTTAACGGTAAACATAGTTTTCCTTACAGCTGCATAGACTTT
AAGTGAGTTATTAAGTCATGACAAAGTATGACATCGTTAGCGGGTGGTAA
CATCAGAACTTTACAATTACATCCATGGCAGTACCAAGTTAAAATTAAGA
GACACCAACACAGTGACCAGCCTGTACAAATTAATGAATGAAATGGTTTA
TTATGCTTGTGATCAGAAATGAAAAGTACAAAAATGTACATCTCAGCTGA
ATTGCATGTTTTTTTAAATGTTACTTAAAAATTGTTGACCTAGGCAATTT
ACAACAATCGTTTGTATTTAAAACTGTTGATGTAGGAAATTTGCACTACC
TTGATATAGGACAGATACAATGTACGTCTGGGTTTGTAGTACAAACATGT
ACAGTACGTGTACTCAACGTACATGGTGGAAACAGGTATGGTCAATTCAT
TTGTGTAGTACTAATAGTAATACAGGGATCAATGTCACGGATCTGTTACT
AGTACTGAGTCTATATATTTACAAGATTCATAAAGGTATAGAGCAGTAAG
TGATAGCTCATACTCATATACATTTACAAACCACACACCCAAACTGATGA
TGTTCTGAGCAATGAGACCTACAAAATGTTGAGGGTAAGGACGAAAATTG
ATGCACATGTGACCTTATTGTAACTGTAACTGGTTCTACCCCATTTTTCA
GAGCAAAAGACCTGCGAGAAGGGTGGGGGTGGACCAGTTTGGCAACAAGA
CATGTGTTTAAAGGTAAGCATAGTTTTGCTTTGCATTCATTTGTGTAATA
TCTAAGAGATCAATGTCACAGATCTGTTACTGAGTCTGTTCCTTTAGAAG
AGTAGCCATGAAGGTTATAGGTTATAGGGCAGTAAGTGATCATGATAGCT
ATGAACAATCTGTTGTATATTTTCAAACCAGTCACCCCCACCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCAAACCAGT
CCCCCCCCCCCCCCCCCAAACTGACTTGTTTGTTCCTCTCTGTCCACAGG
CACTTGGTCGGAGTTTGAAGACGAGGCTCAAAGACAAGCAGCAGAGCTGG
TGGGACCCTGACGCCTCATCTCCACAGGTGTCTGAACTGGCTGCCACTGC
TGGATCATCCCTGTGGGCTATGGTGCTGGAGTACATGATGAACCCGCCTT
CTCTTCCTCCGTTTGTTGAGCAACTTCCACCCTCTTCCCCTTTCAAAACG
GCGCCATCCTTGGTAACATAGTTATAAAGAGACATTATATATTGTAAAAC
TGGATGAAAGGTCGATTTATGAGAGTTTATGTTTAGTACATGTAACTGTG
CAGTCAAGTAAGTCAACTGTGCATGCTGTACTTACTCCTTATACTTGGAA
ATAGTGGCATTTGTCATGTCTGCCAGGTCACAGAACCTGGAAAAACAATT
ATTATCATAGCAGGTTCTTAAAAGGATGTTGACACAGAAATGACAGCTTT
CAAAAAGAAGAAAAAAAATCCAGTCCGTAACAGCTGCATAAGGACAAATG
TGAATCAAGTAACCCCCTTAAGTTCCCCAACAGTCTCCTTGGAGACTTCC
AACTTATGACTTAAAGTAACCTACTTGAGTTCCTGAATGTCTCCCTGGAG
TGCCCGCTGCTTATCCTCGCATTCCGTCTGGAAGTACAACGTACATTGGA
TTTAGGAAACCGTTTTAATCTATTACTGCCAATTGACTAATTAGTGCACT
GGCCATTGGAATAATACTTGTAGTGTTACTTAAAATGAAACCATTATCTC
TCTCCTTCTTCTCTATATATTATAGGTTCTTGTATTCTGATTATTTAGTG
TGCTGGCTGCTGCATTCTTGTCCTCGGCATCTCTCTACATATTATGTGAT
ATTAATAAGGAAGGATTCCGAATACAGAATTCCTTCAACATACTCTATAA
AATTGTAGCTGTACTTAATTATAATCAGAATGCATTTCAATATTCCTTAT
CCCTAACATGTGAATAACATCCTCTCTCCCAGAAAATACCTACTTCTATT
CTTAGATTTGACTCACGCTAACTTGTAAACCGCCATAAGCAGGGCCTCTA
TCTGTAAGATGAAAAACTCATCAGGTGGGTGTCCGGAGCCAGGACTACTG
TTGGGCAACAGGATATTTCAGTTATACACTGTACATCAGAAAATTCATTC
AACAAGAATCTTTTCAGGTCTTCTACCTTAATCACTCTTCTTGTTCTTAT
ATCTAGACTTTGCCTGTAACTTCAGTAGTTTAGATTGACTCGAAGTTAAC
ATGTAAACGTAAATAAGAAACACATGACTTTGCCTTGTATTACAAGTCAT
ACACAGTTACATATAGATAGTATGATAAGCTTTTTAGAAATAGAATCCTC
CAGACTTCAGAACTGCCAGTTGTGCCTTGAGATTCTCGACTTCAACACTT
GTTCTGGCGACCCTCTGGATACATATACTGTAATACACGTTGCAGCATAC
TACTATGATTAAACTGTACTCAATGAAACCTTAATTCCGCTATCCTACAT
CTCTATAATTACTTTTGCCTATTGACTAATTAGTGCACTGGCCATTGGAT
ACTTGTGGCAGTACATTAATTGTACTAGTCTTTATAATTGTAGTGTTACT
TAAAATGAAACCTTTTTCACTCTCCTTCTTTTCTATACATTAAAGGTAAA
CTGATCATTAAGTGCGCTAGCTGTTACATTCTTATTCTCGGCATCTCTAT
ATCATATCAATATTTGTGATAATAAGGAAGGATTCGGAATACAGAATTCC
TGCAACATAATCTATATGATTGTAGCTGTACTTAATATAATATTACTATA
TAATTATGATCATAATCTCTCTCTCATAGTCATACTAATATAACTCTTAT
ACTAAGGTAATTGTAGCAGTACAGTAATAAAACCTTTTTTTCGTTCTGAT
GTCCTCTACTTTCCCATGGTTCGGACCATGACCTTACTGTGGTCACGTGT
AGTCTCCAAGCAGACCTACGGGTTGGCAAAGACCGTATCCAACAGGCAGA
AGGAGTTTTCATAGCCAACCCAAGTCTCATAGCCACCCAAGGTCTGCCAC
AACTGAAACAGGGCGGAGCATTTCTATTCAATAAAGGTGCCGCTGCCCCT
CCTCGTTGTAATGCTAACAGCCGTACGAATGTCCGGGGTACTAATCTTTT
TATGGCCAAGTCCAGTCACCCGCGCACGTCCCAGTGGGAGGTTCGCGCCC
TGGTTGAGCCTAGAAAAAAGCTCTCACAATAGCAGTTTCTTTCACCCATC
GGCGATGTTTGTGGCATCATGGAAAACCGTTCTTACAAAAACATTCGTAG
ACAATGTTTACTGTTTCGGGTTCAAACCACGATTACTAGAGATTAACTGC
AAGATTCCACGTGACCACATGGCGGGAATTGCCCTTACAGTTCCGACGTA
ACTGGTCAAAATTGATCGCATTTTGTGACGATTGAAGCAGTTTTGGTAGC
GATCTTCGTAACAGATTGATTTTGAAAAAGAGACCAAGTCTTTTCTGTTG
GCAACATTTAGTTTATTTTTCCTGGGAAGTTTAATTTTCGCGGTACAGCC
CTGCCCAAGTGAACGGCCTCTCAGTCGCGGCCTGGAGGTGTCAGCCCGGC
ATGGCGCCGCACGCCCGTGCGGACAGAGAGTAATAAACTCACTTACAGAA
GCACAGTTTGATTAGGTAACAATTAGATGTTAATAGCCTTTGTTCAGACC
GACTTGTTCCAGACCTTAGATTGCACTATAAGCTCCTTCTTCTGCCAGTT
GGATACGGTCTTTGCAATCTATTGGGTCTGGTTGGAGACTAAACTCAATA
TCGATAAGGACTCTGCCATGAAAACGTGGAACCTGCCACATTGATAATAA
AAAGGTAGATACATGTACACTGTTTACATTCACTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTTTCTTTCTTTCTTTAGTTTGTTACCGATCGTCTGGGTCGA
AGACGTCATGAAGTTAAACTTTATTCTAACTTAGTAAAGTCTAATTGCTA
TTCACATATCTGTGTTACTGTTAGTCCCTGTAAATGTTAGCTCTCGACAA
TCAGCCATGCTGCCTGAGAGTCTGTGTAAAGGGTTCTGTAACCATTGCTA
GTAGATAGATAAATACATAACGTTAAATGTCATGATGACTACAAAATGGG
TCCTGGAAGTGGAAATATGATTTTTCCAAAGCAAACAGTAGTCAGTTTGT
TTGTGCCTCTATTCGGTCTCCAAGGTCTTATTTAGTAAGTGGTTGGAGTT
TTGGTGTGAAAGGTCTGATTGTAAATACTCAGTGTTCTGGATCTACAACT
GCTGTTTGTTGAACATTTTCAGGTTGAGCGGACCTTTAACTGTTGCACGG
TTGTGACATACTGAAGGAAAATAAAAGCATATCCCTTTGAAGTGCTCTGA
GACATTTGATCTTTTTATCTGTAAAGATTAGACTTTGAACCTCGGACACC
AGTCGCATGATATTAT

Coding sequence (CDS) from alignment at Sc0000032:1414150..1419365+

>transcript:BL85409_cuf3 ID=transcript:BL85409_cuf3|Name=transcript:BL85409_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=900bp|location=Sequence derived from alignment at Sc0000032:1414150..1419365+ (Branchiostoma lanceolatum)
GAAATGTGTTTAACGGAGCAAAAGACCTGCGAGAAGGGTGGGGGTGGACC
AGTTTGGCAACAAGACATGTGTTTAAAGGCACTTGGTCGGAGTTTGAAGA
CGAGGCTCAAAGACAAGCAGCAGAGCTGGTGGGACCCTGACGCCTCATCT
CCACAGGTGTCTGAACTGGCTGCCACTGCTGGATCATCCCTGTGGGCTAT
GGTGCTGGAGTACATGATGAACCCGCCTTCTCTTCCTCCGTTTGTTGAGC
AACTTCCACCCTCTTCCCCTTTCAAAACGGCGCCATCCTTGGTAACATAG
GAAATGTGTTTAACGGAGCAAAAGACCTGCGAGAAGGGTGGGGGTGGACC
AGTTTGGCAACAAGACATGTGTTTAAAGGCACTTGGTCGGAGTTTGAAGA
CGAGGCTCAAAGACAAGCAGCAGAGCTGGTGGGACCCTGACGCCTCATCT
CCACAGGTGTCTGAACTGGCTGCCACTGCTGGATCATCCCTGTGGGCTAT
GGTGCTGGAGTACATGATGAACCCGCCTTCTCTTCCTCCGTTTGTTGAGC
AACTTCCACCCTCTTCCCCTTTCAAAACGGCGCCATCCTTGGTAACATAG
GAAATGTGTTTAACGGAGCAAAAGACCTGCGAGAAGGGTGGGGGTGGACC
AGTTTGGCAACAAGACATGTGTTTAAAGGCACTTGGTCGGAGTTTGAAGA
CGAGGCTCAAAGACAAGCAGCAGAGCTGGTGGGACCCTGACGCCTCATCT
CCACAGGTGTCTGAACTGGCTGCCACTGCTGGATCATCCCTGTGGGCTAT
GGTGCTGGAGTACATGATGAACCCGCCTTCTCTTCCTCCGTTTGTTGAGC
AACTTCCACCCTCTTCCCCTTTCAAAACGGCGCCATCCTTGGTAACATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85409gene:BL85409Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85409_cuf3-E1BL85409_cuf3-E1-1564476830-181702Branchiostoma lanceolatumexon
BL85409_cuf3-E2BL85409_cuf3-E2-1564476830-181704Branchiostoma lanceolatumexon
BL85409_cuf3-E3BL85409_cuf3-E3-1564476830-181707Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85409_cuf3transcript:BL85409_cuf3-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000032genomeSc0000032:1414150..1419365 +
Properties
Property NameValue
Transcript idBL85409_cuf3
Biotypeprotein_coding