transcript:BL85370_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85370_cuf0
Unique Nametranscript:BL85370_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85370_cuf0

>transcript:BL85370_cuf0-protein ID=transcript:BL85370_cuf0-protein|Name=transcript:BL85370_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=121bp
MYGAEYELNTNVPFGSTSLNNDDVPCAVCYVPTRGSKLMIPARNTCPTAW
TREYHGYLMAERHSHAGAKEFVCVDEQPEAVQGGQASQDQALFYPVEAHC
GSLPCPSYVHGRELTCAVCTK
Run BLAST on NCBI

mRNA from alignment at Sc0000040:930880..931820+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85370_cuf0 ID=transcript:BL85370_cuf0|Name=transcript:BL85370_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=941bp|location=Sequence derived from alignment at Sc0000040:930880..931820+ (Branchiostoma lanceolatum)
TATATCTGATGCATAGTTAATTGTGAAATACCAGTGAAGACAACGCCATA
GGTAGACTGCTCTGGAAAATAAAAACTACGAGCATTGTTTTCTTCTTGTA
TCTGTTACCAATATTACTAGTACTCTGAATTCTTCATTTGTTAAACTGTT
ATAATTATCTCCTGATATCTGTGCTATATTTCCGCAGGTGTAGCAGGAGG
CTCACATTACACCCAGTCAGGCGGCGGGACCAACTACCAGTGTCTGCCGA
CCAACCCACAGTGGGGAAGATACCAGGATGGACCACAACCGTTGAGGGCT
TACATGTACGGCGCTGAGTACGAGTTGAACACAAACGTCCCGTTCGGCTC
GACCTCCCTTAACAATGACGACGTCCCGTGCGCCGTCTGCTACGTCCCAA
CCCGCGGCAGTAAGTTAATGATCCCCGCCCGTAACACCTGCCCCACCGCC
TGGACCCGGGAGTACCATGGCTACCTCATGGCTGAACGTCACAGCCACGC
CGGTGCTAAAGAGTTTGTCTGTGTGGATGAACAGCCTGAGGCCGTACAGG
GCGGACAAGCCAGCCAGGACCAAGCGCTGTTCTACCCCGTGGAAGCCCAC
TGTGGGTCCCTGCCGTGTCCCAGCTACGTGCACGGGAGGGAGCTTACCTG
TGCCGTCTGCACCAAGTGAAATCAGTATTCATCGACCAAATAACGTCCTA
TGGTACTAGATCCCTATGAAATACTTGACAACAATTACCACATATGGTAT
GATGACTAAATGTAGATTGACTTGTTATCTGGAATTGAGATGGCAGAGTT
CAAAATCAGATTTGATGTTTTCCAATTCCAATTTTGTCATTAGACTTCCC
CTAATATACATTTAATGGTGACAGTTGACTATTTAGTGACCACGCAAAAA
AAGAAGCTTTTTTTTTAAGGTCATGCCACTTCAATGCGTAA

Coding sequence (CDS) from alignment at Sc0000040:930880..931820+

>transcript:BL85370_cuf0 ID=transcript:BL85370_cuf0|Name=transcript:BL85370_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=366bp|location=Sequence derived from alignment at Sc0000040:930880..931820+ (Branchiostoma lanceolatum)
ATGTACGGCGCTGAGTACGAGTTGAACACAAACGTCCCGTTCGGCTCGAC
CTCCCTTAACAATGACGACGTCCCGTGCGCCGTCTGCTACGTCCCAACCC
GCGGCAGTAAGTTAATGATCCCCGCCCGTAACACCTGCCCCACCGCCTGG
ACCCGGGAGTACCATGGCTACCTCATGGCTGAACGTCACAGCCACGCCGG
TGCTAAAGAGTTTGTCTGTGTGGATGAACAGCCTGAGGCCGTACAGGGCG
GACAAGCCAGCCAGGACCAAGCGCTGTTCTACCCCGTGGAAGCCCACTGT
GGGTCCCTGCCGTGTCCCAGCTACGTGCACGGGAGGGAGCTTACCTGTGC
CGTCTGCACCAAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85370gene:BL85370Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85370_cuf0-E1BL85370_cuf0-E1-1564476830-203428Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85370_cuf0transcript:BL85370_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000040genomeSc0000040:930880..931820 +
Properties
Property NameValue
Transcript idBL85370_cuf0
Biotypeprotein_coding