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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85368_cuf0 >transcript:BL85368_cuf0-protein ID=transcript:BL85368_cuf0-protein|Name=transcript:BL85368_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=822bp
HQCKLQNFCRLCGGFKAARMLSTDKLRFQKDLQRYLSLDVGSDVPSIHPG KFCKCCLLYLKRLKNHYKRTRSLKEPRRIPDFHPHSLPCRICDFVPCVSP YKRSPPPEVPAMCPLPSGVQPDDEFKAKRTRQSLADEFKGDKLQAASDSN PGYPPKPLPTTTSSYNQTAPSTSRGEPSSTGQAESNRGPSQFPVLISALL TCRGEYSSTRQAVSHAGPSESVPSTSHGEPYSASKTASHTGFTHFSQATL STVSFEPSSTSQAASRAPFSNFPVATMSNSRFELPSASNGVAHTGPSKSV PSASCSKPSGVSHISQSTPANSSGEPSSASNGVTHAGPSHFPKPTTSTNR DKPSSASNGVTDTGSTQFPRPTPSTSSDKPSSASSAASHAGSTHFPVPTS SNSSGKLPSASNGVTNAGPLHSRKPTPSISPGKAASASKAAEESEIVTSL PNIKWNSIPLYRFVNKTQANVFLCMMCTNRMGAPHVACHPRLATCGHMFC CDCILAWLATNNACPKCWTRMSVYKVSALDDTLVTLHDNLKVSCMYHDKG CLQTVVLCGLEKHEKECGFRPLEECSSRPDSEKQTEEGSSRPKEKCNSRR NEKCSSRPKEKCSSRPKEKCSSRSDSEKHTEECSSRPTEKYSSRSDSEKH TEECSSRPTEKCSSRPDSEKHTKECSSRPKEKCSSRPDSEKRTEECSFRR DTEEHVEESGARKRHRGRGKAKQSLLECSSQYGKRNRLPDVISSVNRFCS DHFEDKKDVLFFMLLNHLRETNDQRQSMLYRLWSIGDVDVGNDFLELKAA SKDQFCGICREAGHNKKTCTQT Run BLAST on NCBI mRNA from alignment at Sc0000040:1019725..1023072+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85368_cuf0 ID=transcript:BL85368_cuf0|Name=transcript:BL85368_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3348bp|location=Sequence derived from alignment at Sc0000040:1019725..1023072+ (Branchiostoma lanceolatum) GCATCAGTGTAAGTTGCAAAACTTCTGCAGACTTTGTGGGGGATTCAAGG
CAGCAAGGATGCTATCTACCGACAAGCTCCGGTTTCAGAAGGATCTGCAA
AGGTACCTGAGTCTAGATGTGGGTTCAGATGTCCCGTCTATACACCCAGG
CAAGTTCTGCAAGTGCTGCCTGCTATACCTGAAGAGGTTAAAGAACCACT
ATAAGAGAACTAGATCACTGAAGGAACCGAGGAGGATTCCAGACTTCCAT
CCCCACTCCTTACCATGTAGGATCTGTGACTTTGTTCCCTGTGTAAGCCC
ATATAAGAGAAGCCCTCCCCCTGAGGTCCCTGCGATGTGCCCGCTCCCAT
CCGGAGTGCAGCCCGATGATGAATTCAAGGCAAAGCGGACACGCCAATCT
TTGGCAGACGAGTTCAAAGGAGACAAGTTGCAAGCTGCATCAGACTCTAA
CCCCGGGTACCCTCCTAAGCCACTACCAACAACAACCAGTAGCTACAACC
AGACAGCGCCATCTACCAGTCGTGGGGAGCCCTCCAGTACAGGTCAAGCT
GAATCAAATCGAGGTCCCTCACAGTTTCCTGTGCTGATATCAGCACTTTT
AACCTGTCGTGGCGAGTACTCCAGTACAAGGCAAGCTGTATCACACGCTG
GCCCTAGTGAGTCAGTGCCATCTACCAGTCATGGGGAGCCCTACAGTGCA
AGTAAAACTGCATCACACACTGGCTTCACACACTTTTCCCAGGCAACACT
GTCCACCGTTTCTTTTGAGCCCTCCAGTACAAGTCAAGCTGCATCACGTG
CACCTTTTTCAAACTTTCCTGTGGCAACAATGTCAAACAGCCGTTTCGAG
CTCCCCAGTGCAAGTAATGGTGTAGCACACACTGGCCCTAGTAAGTCAGT
GCCATCTGCCAGCTGTAGCAAGCCCTCTGGTGTCTCACACATTTCTCAGT
CAACGCCGGCAAACAGTAGTGGCGAGCCGTCCAGTGCAAGTAATGGTGTA
ACACACGCTGGCCCCTCGCACTTTCCTAAACCAACAACATCAACCAATCG
TGACAAGCCATCCAGTGCAAGTAATGGCGTAACAGACACTGGTTCCACAC
AATTTCCTAGACCAACCCCATCTACCAGTAGTGACAAGCCTTCCAGTGCA
AGTTCAGCTGCATCACATGCTGGCTCCACACACTTTCCTGTGCCAACATC
GTCAAACAGCAGTGGCAAGCTCCCCAGTGCAAGTAATGGTGTAACAAATG
CTGGCCCCTTGCATTCTCGTAAGCCAACACCATCTATCAGTCCTGGCAAG
GCCGCCAGTGCAAGTAAAGCTGCTGAGGAGTCTGAAATAGTGACAAGTTT
ACCTAACATCAAGTGGAATAGTATACCACTCTACAGATTTGTTAATAAGA
CCCAGGCCAATGTGTTTCTATGTATGATGTGTACTAATAGGATGGGTGCC
CCCCATGTGGCCTGCCACCCCAGACTAGCTACCTGTGGACACATGTTCTG
TTGTGATTGTATTCTGGCTTGGCTAGCAACAAATAACGCATGTCCAAAGT
GTTGGACAAGAATGTCTGTTTACAAGGTGAGTGCTTTAGACGATACTTTA
GTTACTTTGCATGATAACCTGAAAGTTTCATGTATGTATCATGATAAAGG
ATGTCTACAGACTGTCGTGTTGTGTGGCTTAGAGAAACACGAAAAAGAGT
GTGGTTTTCGACCACTAGAAGAGTGTAGTTCTCGGCCTGACTCAGAGAAA
CAGACAGAAGAGGGCAGTTCTCGGCCTAAAGAAAAGTGCAATTCTCGGCG
TAATGAAAAGTGCAGTTCTCGGCCTAAAGAAAAGTGCAGTTCTCGGCCTA
AAGAAAAGTGCAGTTCTCGGTCTGACTCAGAGAAACACACAGAAGAATGC
AGTTCTCGGCCTACAGAAAAGTACAGTTCTCGATCTGACTCAGAGAAACA
CACAGAAGAGTGCAGTTCTCGGCCTACAGAAAAGTGCAGTTCTCGGCCTG
ACTCAGAGAAACACACAAAAGAGTGCAGTTCTCGGCCTAAAGAAAAGTGC
AGTTCTCGGCCTGACTCAGAGAAACGCACAGAAGAGTGCAGTTTTCGGAG
AGACACAGAGGAACACGTAGAAGAGAGCGGTGCACGGAAGCGGCATCGTG
GAAGGGGGAAAGCAAAACAATCGCTCCTTGAATGTTCTAGTCAATATGGA
AAAAGGAATCGATTGCCAGATGTCATCTCCTCTGTTAATAGGTTTTGCTC
AGATCACTTTGAAGATAAGAAGGATGTTTTGTTCTTTATGCTACTTAACC
ATCTTCGGGAGACAAACGATCAAAGACAATCTATGCTGTATCGTTTATGG
TCTATTGGTGATGTTGACGTGGGCAATGATTTTTTGGAATTGAAGGCGGC
TTCAAAGGATCAGTTCTGTGGTATTTGCCGTGAAGCTGGCCACAACAAAA
AAACATGTACACAGACATGAGTAGGAAAGTACCAATCCACATGTTATGAT
TGCTGCTTTGTGTTACATTATGGTGAATGGTTTATTCATTCAGTGTATTT
GTTAAGTTATCCTTTTGTATCCTGATTTGTTTTGATTTGTAAGGGCTCCC
TTGGAAATCAGTTACTTGTACTCAGTTTAATTGTAGGGACTACCCTTAAG
ATTTATAAATAGATAAGTAAATGTGGACATTTGTTTTTGTTTTGCTGAAT
TGATAGTTGATGTTACATGTTCAATAGATGAAGATTTGTTGCCAGTACAA
GGGATGGTTGCCCTAGAAGTGACAGTCATTGTCTCTTGAAAACCGTTTGA
AACAAATTATATTCAACTTTTCCCTTAGAAGGTTATCTGTCTTGAAGATA
AGTAGGGCATTTTGAACTTCATGTTACACCTAAGTAAGTAAGCTACATCT
TCTATAGGTGTAGATTTATTGCCAGTACCAGAGATGGTCGACTTAAAAGT
AACGGATACTGTCTCTTGAAAACCATCTGAAACAATTTGACTTAAGGTTA
AAAGTTCATCTGTGTTGAAGATAAGAATGTTTGAATTTGCTCTTCATATT
ACTCGACCATTTTCGTGAGACGATGTTACATCTTCAGTAGATGTAGATTT
ATTGCCAGTGCCAGGGAAGTGACAGACATTGTCTCTTGAAAACCATTTTG
ACTTTTAGCTTGAAATTTCACCTATGTTGAAGATAAGACTTGTTCTTAAT
GTAACTTAAACATTTTCATAAGACGAATGATCAAACTTTCAAAGATCATC
TAGAGTGTATCATTTATGGTCCGCTGGTACATGGTGATGTTGACATGGAC
TAAAGGGATGATTAATGATGATTGTTATTAAGAACTGTGAGTCTTAAT Coding sequence (CDS) from alignment at Sc0000040:1019725..1023072+ >transcript:BL85368_cuf0 ID=transcript:BL85368_cuf0|Name=transcript:BL85368_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2469bp|location=Sequence derived from alignment at Sc0000040:1019725..1023072+ (Branchiostoma lanceolatum) CATCAGTGTAAGTTGCAAAACTTCTGCAGACTTTGTGGGGGATTCAAGGC AGCAAGGATGCTATCTACCGACAAGCTCCGGTTTCAGAAGGATCTGCAAA GGTACCTGAGTCTAGATGTGGGTTCAGATGTCCCGTCTATACACCCAGGC AAGTTCTGCAAGTGCTGCCTGCTATACCTGAAGAGGTTAAAGAACCACTA TAAGAGAACTAGATCACTGAAGGAACCGAGGAGGATTCCAGACTTCCATC CCCACTCCTTACCATGTAGGATCTGTGACTTTGTTCCCTGTGTAAGCCCA TATAAGAGAAGCCCTCCCCCTGAGGTCCCTGCGATGTGCCCGCTCCCATC CGGAGTGCAGCCCGATGATGAATTCAAGGCAAAGCGGACACGCCAATCTT TGGCAGACGAGTTCAAAGGAGACAAGTTGCAAGCTGCATCAGACTCTAAC CCCGGGTACCCTCCTAAGCCACTACCAACAACAACCAGTAGCTACAACCA GACAGCGCCATCTACCAGTCGTGGGGAGCCCTCCAGTACAGGTCAAGCTG AATCAAATCGAGGTCCCTCACAGTTTCCTGTGCTGATATCAGCACTTTTA ACCTGTCGTGGCGAGTACTCCAGTACAAGGCAAGCTGTATCACACGCTGG CCCTAGTGAGTCAGTGCCATCTACCAGTCATGGGGAGCCCTACAGTGCAA GTAAAACTGCATCACACACTGGCTTCACACACTTTTCCCAGGCAACACTG TCCACCGTTTCTTTTGAGCCCTCCAGTACAAGTCAAGCTGCATCACGTGC ACCTTTTTCAAACTTTCCTGTGGCAACAATGTCAAACAGCCGTTTCGAGC TCCCCAGTGCAAGTAATGGTGTAGCACACACTGGCCCTAGTAAGTCAGTG CCATCTGCCAGCTGTAGCAAGCCCTCTGGTGTCTCACACATTTCTCAGTC AACGCCGGCAAACAGTAGTGGCGAGCCGTCCAGTGCAAGTAATGGTGTAA CACACGCTGGCCCCTCGCACTTTCCTAAACCAACAACATCAACCAATCGT GACAAGCCATCCAGTGCAAGTAATGGCGTAACAGACACTGGTTCCACACA ATTTCCTAGACCAACCCCATCTACCAGTAGTGACAAGCCTTCCAGTGCAA GTTCAGCTGCATCACATGCTGGCTCCACACACTTTCCTGTGCCAACATCG TCAAACAGCAGTGGCAAGCTCCCCAGTGCAAGTAATGGTGTAACAAATGC TGGCCCCTTGCATTCTCGTAAGCCAACACCATCTATCAGTCCTGGCAAGG CCGCCAGTGCAAGTAAAGCTGCTGAGGAGTCTGAAATAGTGACAAGTTTA CCTAACATCAAGTGGAATAGTATACCACTCTACAGATTTGTTAATAAGAC CCAGGCCAATGTGTTTCTATGTATGATGTGTACTAATAGGATGGGTGCCC CCCATGTGGCCTGCCACCCCAGACTAGCTACCTGTGGACACATGTTCTGT TGTGATTGTATTCTGGCTTGGCTAGCAACAAATAACGCATGTCCAAAGTG TTGGACAAGAATGTCTGTTTACAAGGTGAGTGCTTTAGACGATACTTTAG TTACTTTGCATGATAACCTGAAAGTTTCATGTATGTATCATGATAAAGGA TGTCTACAGACTGTCGTGTTGTGTGGCTTAGAGAAACACGAAAAAGAGTG TGGTTTTCGACCACTAGAAGAGTGTAGTTCTCGGCCTGACTCAGAGAAAC AGACAGAAGAGGGCAGTTCTCGGCCTAAAGAAAAGTGCAATTCTCGGCGT AATGAAAAGTGCAGTTCTCGGCCTAAAGAAAAGTGCAGTTCTCGGCCTAA AGAAAAGTGCAGTTCTCGGTCTGACTCAGAGAAACACACAGAAGAATGCA GTTCTCGGCCTACAGAAAAGTACAGTTCTCGATCTGACTCAGAGAAACAC ACAGAAGAGTGCAGTTCTCGGCCTACAGAAAAGTGCAGTTCTCGGCCTGA CTCAGAGAAACACACAAAAGAGTGCAGTTCTCGGCCTAAAGAAAAGTGCA GTTCTCGGCCTGACTCAGAGAAACGCACAGAAGAGTGCAGTTTTCGGAGA GACACAGAGGAACACGTAGAAGAGAGCGGTGCACGGAAGCGGCATCGTGG AAGGGGGAAAGCAAAACAATCGCTCCTTGAATGTTCTAGTCAATATGGAA AAAGGAATCGATTGCCAGATGTCATCTCCTCTGTTAATAGGTTTTGCTCA GATCACTTTGAAGATAAGAAGGATGTTTTGTTCTTTATGCTACTTAACCA TCTTCGGGAGACAAACGATCAAAGACAATCTATGCTGTATCGTTTATGGT CTATTGGTGATGTTGACGTGGGCAATGATTTTTTGGAATTGAAGGCGGCT TCAAAGGATCAGTTCTGTGGTATTTGCCGTGAAGCTGGCCACAACAAAAA AACATGTACACAGACATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000040 | genome | Sc0000040:1019725..1023072 + |
Properties
Property Name | Value |
Transcript id | BL85368_cuf0 |
Biotype | protein_coding |
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