transcript:BL85368_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85368_cuf0
Unique Nametranscript:BL85368_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85368_cuf0

>transcript:BL85368_cuf0-protein ID=transcript:BL85368_cuf0-protein|Name=transcript:BL85368_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=822bp
HQCKLQNFCRLCGGFKAARMLSTDKLRFQKDLQRYLSLDVGSDVPSIHPG
KFCKCCLLYLKRLKNHYKRTRSLKEPRRIPDFHPHSLPCRICDFVPCVSP
YKRSPPPEVPAMCPLPSGVQPDDEFKAKRTRQSLADEFKGDKLQAASDSN
PGYPPKPLPTTTSSYNQTAPSTSRGEPSSTGQAESNRGPSQFPVLISALL
TCRGEYSSTRQAVSHAGPSESVPSTSHGEPYSASKTASHTGFTHFSQATL
STVSFEPSSTSQAASRAPFSNFPVATMSNSRFELPSASNGVAHTGPSKSV
PSASCSKPSGVSHISQSTPANSSGEPSSASNGVTHAGPSHFPKPTTSTNR
DKPSSASNGVTDTGSTQFPRPTPSTSSDKPSSASSAASHAGSTHFPVPTS
SNSSGKLPSASNGVTNAGPLHSRKPTPSISPGKAASASKAAEESEIVTSL
PNIKWNSIPLYRFVNKTQANVFLCMMCTNRMGAPHVACHPRLATCGHMFC
CDCILAWLATNNACPKCWTRMSVYKVSALDDTLVTLHDNLKVSCMYHDKG
CLQTVVLCGLEKHEKECGFRPLEECSSRPDSEKQTEEGSSRPKEKCNSRR
NEKCSSRPKEKCSSRPKEKCSSRSDSEKHTEECSSRPTEKYSSRSDSEKH
TEECSSRPTEKCSSRPDSEKHTKECSSRPKEKCSSRPDSEKRTEECSFRR
DTEEHVEESGARKRHRGRGKAKQSLLECSSQYGKRNRLPDVISSVNRFCS
DHFEDKKDVLFFMLLNHLRETNDQRQSMLYRLWSIGDVDVGNDFLELKAA
SKDQFCGICREAGHNKKTCTQT
Run BLAST on NCBI

mRNA from alignment at Sc0000040:1019725..1023072+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85368_cuf0 ID=transcript:BL85368_cuf0|Name=transcript:BL85368_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3348bp|location=Sequence derived from alignment at Sc0000040:1019725..1023072+ (Branchiostoma lanceolatum)
GCATCAGTGTAAGTTGCAAAACTTCTGCAGACTTTGTGGGGGATTCAAGG CAGCAAGGATGCTATCTACCGACAAGCTCCGGTTTCAGAAGGATCTGCAA AGGTACCTGAGTCTAGATGTGGGTTCAGATGTCCCGTCTATACACCCAGG CAAGTTCTGCAAGTGCTGCCTGCTATACCTGAAGAGGTTAAAGAACCACT ATAAGAGAACTAGATCACTGAAGGAACCGAGGAGGATTCCAGACTTCCAT CCCCACTCCTTACCATGTAGGATCTGTGACTTTGTTCCCTGTGTAAGCCC ATATAAGAGAAGCCCTCCCCCTGAGGTCCCTGCGATGTGCCCGCTCCCAT CCGGAGTGCAGCCCGATGATGAATTCAAGGCAAAGCGGACACGCCAATCT TTGGCAGACGAGTTCAAAGGAGACAAGTTGCAAGCTGCATCAGACTCTAA CCCCGGGTACCCTCCTAAGCCACTACCAACAACAACCAGTAGCTACAACC AGACAGCGCCATCTACCAGTCGTGGGGAGCCCTCCAGTACAGGTCAAGCT GAATCAAATCGAGGTCCCTCACAGTTTCCTGTGCTGATATCAGCACTTTT AACCTGTCGTGGCGAGTACTCCAGTACAAGGCAAGCTGTATCACACGCTG GCCCTAGTGAGTCAGTGCCATCTACCAGTCATGGGGAGCCCTACAGTGCA AGTAAAACTGCATCACACACTGGCTTCACACACTTTTCCCAGGCAACACT GTCCACCGTTTCTTTTGAGCCCTCCAGTACAAGTCAAGCTGCATCACGTG CACCTTTTTCAAACTTTCCTGTGGCAACAATGTCAAACAGCCGTTTCGAG CTCCCCAGTGCAAGTAATGGTGTAGCACACACTGGCCCTAGTAAGTCAGT GCCATCTGCCAGCTGTAGCAAGCCCTCTGGTGTCTCACACATTTCTCAGT CAACGCCGGCAAACAGTAGTGGCGAGCCGTCCAGTGCAAGTAATGGTGTA ACACACGCTGGCCCCTCGCACTTTCCTAAACCAACAACATCAACCAATCG TGACAAGCCATCCAGTGCAAGTAATGGCGTAACAGACACTGGTTCCACAC AATTTCCTAGACCAACCCCATCTACCAGTAGTGACAAGCCTTCCAGTGCA AGTTCAGCTGCATCACATGCTGGCTCCACACACTTTCCTGTGCCAACATC GTCAAACAGCAGTGGCAAGCTCCCCAGTGCAAGTAATGGTGTAACAAATG CTGGCCCCTTGCATTCTCGTAAGCCAACACCATCTATCAGTCCTGGCAAG GCCGCCAGTGCAAGTAAAGCTGCTGAGGAGTCTGAAATAGTGACAAGTTT ACCTAACATCAAGTGGAATAGTATACCACTCTACAGATTTGTTAATAAGA CCCAGGCCAATGTGTTTCTATGTATGATGTGTACTAATAGGATGGGTGCC CCCCATGTGGCCTGCCACCCCAGACTAGCTACCTGTGGACACATGTTCTG TTGTGATTGTATTCTGGCTTGGCTAGCAACAAATAACGCATGTCCAAAGT GTTGGACAAGAATGTCTGTTTACAAGGTGAGTGCTTTAGACGATACTTTA GTTACTTTGCATGATAACCTGAAAGTTTCATGTATGTATCATGATAAAGG ATGTCTACAGACTGTCGTGTTGTGTGGCTTAGAGAAACACGAAAAAGAGT GTGGTTTTCGACCACTAGAAGAGTGTAGTTCTCGGCCTGACTCAGAGAAA CAGACAGAAGAGGGCAGTTCTCGGCCTAAAGAAAAGTGCAATTCTCGGCG TAATGAAAAGTGCAGTTCTCGGCCTAAAGAAAAGTGCAGTTCTCGGCCTA AAGAAAAGTGCAGTTCTCGGTCTGACTCAGAGAAACACACAGAAGAATGC AGTTCTCGGCCTACAGAAAAGTACAGTTCTCGATCTGACTCAGAGAAACA CACAGAAGAGTGCAGTTCTCGGCCTACAGAAAAGTGCAGTTCTCGGCCTG ACTCAGAGAAACACACAAAAGAGTGCAGTTCTCGGCCTAAAGAAAAGTGC AGTTCTCGGCCTGACTCAGAGAAACGCACAGAAGAGTGCAGTTTTCGGAG AGACACAGAGGAACACGTAGAAGAGAGCGGTGCACGGAAGCGGCATCGTG GAAGGGGGAAAGCAAAACAATCGCTCCTTGAATGTTCTAGTCAATATGGA AAAAGGAATCGATTGCCAGATGTCATCTCCTCTGTTAATAGGTTTTGCTC AGATCACTTTGAAGATAAGAAGGATGTTTTGTTCTTTATGCTACTTAACC ATCTTCGGGAGACAAACGATCAAAGACAATCTATGCTGTATCGTTTATGG TCTATTGGTGATGTTGACGTGGGCAATGATTTTTTGGAATTGAAGGCGGC TTCAAAGGATCAGTTCTGTGGTATTTGCCGTGAAGCTGGCCACAACAAAA AAACATGTACACAGACATGAGTAGGAAAGTACCAATCCACATGTTATGAT TGCTGCTTTGTGTTACATTATGGTGAATGGTTTATTCATTCAGTGTATTT GTTAAGTTATCCTTTTGTATCCTGATTTGTTTTGATTTGTAAGGGCTCCC TTGGAAATCAGTTACTTGTACTCAGTTTAATTGTAGGGACTACCCTTAAG ATTTATAAATAGATAAGTAAATGTGGACATTTGTTTTTGTTTTGCTGAAT TGATAGTTGATGTTACATGTTCAATAGATGAAGATTTGTTGCCAGTACAA GGGATGGTTGCCCTAGAAGTGACAGTCATTGTCTCTTGAAAACCGTTTGA AACAAATTATATTCAACTTTTCCCTTAGAAGGTTATCTGTCTTGAAGATA AGTAGGGCATTTTGAACTTCATGTTACACCTAAGTAAGTAAGCTACATCT TCTATAGGTGTAGATTTATTGCCAGTACCAGAGATGGTCGACTTAAAAGT AACGGATACTGTCTCTTGAAAACCATCTGAAACAATTTGACTTAAGGTTA AAAGTTCATCTGTGTTGAAGATAAGAATGTTTGAATTTGCTCTTCATATT ACTCGACCATTTTCGTGAGACGATGTTACATCTTCAGTAGATGTAGATTT ATTGCCAGTGCCAGGGAAGTGACAGACATTGTCTCTTGAAAACCATTTTG ACTTTTAGCTTGAAATTTCACCTATGTTGAAGATAAGACTTGTTCTTAAT GTAACTTAAACATTTTCATAAGACGAATGATCAAACTTTCAAAGATCATC TAGAGTGTATCATTTATGGTCCGCTGGTACATGGTGATGTTGACATGGAC TAAAGGGATGATTAATGATGATTGTTATTAAGAACTGTGAGTCTTAAT

Coding sequence (CDS) from alignment at Sc0000040:1019725..1023072+

>transcript:BL85368_cuf0 ID=transcript:BL85368_cuf0|Name=transcript:BL85368_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2469bp|location=Sequence derived from alignment at Sc0000040:1019725..1023072+ (Branchiostoma lanceolatum)
CATCAGTGTAAGTTGCAAAACTTCTGCAGACTTTGTGGGGGATTCAAGGC
AGCAAGGATGCTATCTACCGACAAGCTCCGGTTTCAGAAGGATCTGCAAA
GGTACCTGAGTCTAGATGTGGGTTCAGATGTCCCGTCTATACACCCAGGC
AAGTTCTGCAAGTGCTGCCTGCTATACCTGAAGAGGTTAAAGAACCACTA
TAAGAGAACTAGATCACTGAAGGAACCGAGGAGGATTCCAGACTTCCATC
CCCACTCCTTACCATGTAGGATCTGTGACTTTGTTCCCTGTGTAAGCCCA
TATAAGAGAAGCCCTCCCCCTGAGGTCCCTGCGATGTGCCCGCTCCCATC
CGGAGTGCAGCCCGATGATGAATTCAAGGCAAAGCGGACACGCCAATCTT
TGGCAGACGAGTTCAAAGGAGACAAGTTGCAAGCTGCATCAGACTCTAAC
CCCGGGTACCCTCCTAAGCCACTACCAACAACAACCAGTAGCTACAACCA
GACAGCGCCATCTACCAGTCGTGGGGAGCCCTCCAGTACAGGTCAAGCTG
AATCAAATCGAGGTCCCTCACAGTTTCCTGTGCTGATATCAGCACTTTTA
ACCTGTCGTGGCGAGTACTCCAGTACAAGGCAAGCTGTATCACACGCTGG
CCCTAGTGAGTCAGTGCCATCTACCAGTCATGGGGAGCCCTACAGTGCAA
GTAAAACTGCATCACACACTGGCTTCACACACTTTTCCCAGGCAACACTG
TCCACCGTTTCTTTTGAGCCCTCCAGTACAAGTCAAGCTGCATCACGTGC
ACCTTTTTCAAACTTTCCTGTGGCAACAATGTCAAACAGCCGTTTCGAGC
TCCCCAGTGCAAGTAATGGTGTAGCACACACTGGCCCTAGTAAGTCAGTG
CCATCTGCCAGCTGTAGCAAGCCCTCTGGTGTCTCACACATTTCTCAGTC
AACGCCGGCAAACAGTAGTGGCGAGCCGTCCAGTGCAAGTAATGGTGTAA
CACACGCTGGCCCCTCGCACTTTCCTAAACCAACAACATCAACCAATCGT
GACAAGCCATCCAGTGCAAGTAATGGCGTAACAGACACTGGTTCCACACA
ATTTCCTAGACCAACCCCATCTACCAGTAGTGACAAGCCTTCCAGTGCAA
GTTCAGCTGCATCACATGCTGGCTCCACACACTTTCCTGTGCCAACATCG
TCAAACAGCAGTGGCAAGCTCCCCAGTGCAAGTAATGGTGTAACAAATGC
TGGCCCCTTGCATTCTCGTAAGCCAACACCATCTATCAGTCCTGGCAAGG
CCGCCAGTGCAAGTAAAGCTGCTGAGGAGTCTGAAATAGTGACAAGTTTA
CCTAACATCAAGTGGAATAGTATACCACTCTACAGATTTGTTAATAAGAC
CCAGGCCAATGTGTTTCTATGTATGATGTGTACTAATAGGATGGGTGCCC
CCCATGTGGCCTGCCACCCCAGACTAGCTACCTGTGGACACATGTTCTGT
TGTGATTGTATTCTGGCTTGGCTAGCAACAAATAACGCATGTCCAAAGTG
TTGGACAAGAATGTCTGTTTACAAGGTGAGTGCTTTAGACGATACTTTAG
TTACTTTGCATGATAACCTGAAAGTTTCATGTATGTATCATGATAAAGGA
TGTCTACAGACTGTCGTGTTGTGTGGCTTAGAGAAACACGAAAAAGAGTG
TGGTTTTCGACCACTAGAAGAGTGTAGTTCTCGGCCTGACTCAGAGAAAC
AGACAGAAGAGGGCAGTTCTCGGCCTAAAGAAAAGTGCAATTCTCGGCGT
AATGAAAAGTGCAGTTCTCGGCCTAAAGAAAAGTGCAGTTCTCGGCCTAA
AGAAAAGTGCAGTTCTCGGTCTGACTCAGAGAAACACACAGAAGAATGCA
GTTCTCGGCCTACAGAAAAGTACAGTTCTCGATCTGACTCAGAGAAACAC
ACAGAAGAGTGCAGTTCTCGGCCTACAGAAAAGTGCAGTTCTCGGCCTGA
CTCAGAGAAACACACAAAAGAGTGCAGTTCTCGGCCTAAAGAAAAGTGCA
GTTCTCGGCCTGACTCAGAGAAACGCACAGAAGAGTGCAGTTTTCGGAGA
GACACAGAGGAACACGTAGAAGAGAGCGGTGCACGGAAGCGGCATCGTGG
AAGGGGGAAAGCAAAACAATCGCTCCTTGAATGTTCTAGTCAATATGGAA
AAAGGAATCGATTGCCAGATGTCATCTCCTCTGTTAATAGGTTTTGCTCA
GATCACTTTGAAGATAAGAAGGATGTTTTGTTCTTTATGCTACTTAACCA
TCTTCGGGAGACAAACGATCAAAGACAATCTATGCTGTATCGTTTATGGT
CTATTGGTGATGTTGACGTGGGCAATGATTTTTTGGAATTGAAGGCGGCT
TCAAAGGATCAGTTCTGTGGTATTTGCCGTGAAGCTGGCCACAACAAAAA
AACATGTACACAGACATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85368gene:BL85368Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85368_cuf0-E1BL85368_cuf0-E1-1564476830-203536Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85368_cuf0transcript:BL85368_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000040genomeSc0000040:1019725..1023072 +
Properties
Property NameValue
Transcript idBL85368_cuf0
Biotypeprotein_coding