|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85237_cuf0 >transcript:BL85237_cuf0-protein ID=transcript:BL85237_cuf0-protein|Name=transcript:BL85237_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=697bp
WDEAAAMLVDRGREVLGIEKRKKHKDTYVTDDPQVAKMSKEQKNLRHNIQ
QLTRGTVTRSVQEKLNNLTAKRRRVQNQQRKRIRELVTAKIHTQLAEIEA
IKNENARMFAAMKTLRFSGGTALTVCSPDGEVLAKPLDQAKVISNYFEGL
FNIDATPVPSLTAAPLRNPVTASEVARAASRLKNGRSFGADGVPNELLKY
CCSKSDDPMCTTTARIINAVFSKGEVMSALGQGILIPLQKPGKPRGPCSS
LRPIVLLNGLRKLFSLIVLERCKPQVNLYLPRSQSAYRQGHSTADIVFTK
RILADLVMTRMWDVHILGIDLSRAFDTVDRARLLSLLKDVVNDDDTVRMI
QALLTDTTLAVRVRGEVAPQFQATVGSPQGDSLSPQLFNVYYEAALRDLR
RSSPPIPAEDKRLKLAAETQYADDLDFISTSSHHLEKIHEEAMKVLPEWK
LHANAGKTERVHICHEKDREEEEWRRKKSVGSRLGISDDIEERIQLANVA
MRKMWSMWGTQHISLELKLKLFQVYVIPVILYNAGTWGLTEQLAYKIDSW
HRKQLRRLTGHIYPNCISNVKLYNKCRTSPLQNEVHRRRWFLFGHILRTP
EDSPPQKVLNIAWFLFGHILRTPEDSPPQKVLNIAFSKKLTPRQGRPREG
LLSSLIDDCKLYMKMNIRTETHVLKYLRKRARNKQDWAKMYTDLVKL Run BLAST on NCBI mRNA from alignment at Sc0000053:1457225..1459687+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85237_cuf0 ID=transcript:BL85237_cuf0|Name=transcript:BL85237_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2463bp|location=Sequence derived from alignment at Sc0000053:1457225..1459687+ (Branchiostoma lanceolatum)
GTGGGACGAAGCGGCAGCGATGTTGGTAGATCGAGGAAGGGAAGTTCTAG
GAATAGAAAAGCGAAAGAAGCATAAAGACACCTACGTCACTGATGATCCA
CAAGTCGCCAAAATGTCAAAAGAACAGAAAAATCTGCGACACAACATACA
GCAGCTTACGAGAGGAACGGTGACTCGCTCTGTGCAGGAAAAACTAAACA
ACCTCACAGCGAAAAGAAGGAGGGTACAAAACCAACAGCGTAAGAGGATA
CGGGAACTTGTCACAGCCAAGATTCACACTCAGTTAGCAGAAATAGAGGC
CATTAAAAACGAAAACGCAAGGATGTTCGCGGCCATGAAGACCCTCAGAT
TCAGTGGAGGGACAGCGCTCACTGTGTGCTCCCCGGACGGTGAGGTGCTT
GCCAAACCTCTAGACCAGGCCAAGGTCATCTCAAACTATTTTGAAGGTCT
CTTCAACATCGACGCGACACCTGTCCCTTCGCTCACAGCGGCGCCCTTGC
GCAACCCTGTAACAGCGTCGGAAGTCGCTAGGGCAGCGTCACGACTCAAG
AATGGACGTAGTTTCGGAGCAGACGGCGTCCCGAACGAACTCTTGAAATA
CTGCTGTTCCAAGTCCGATGATCCCATGTGTACCACTACAGCGAGGATAA
TAAACGCCGTATTCAGCAAAGGAGAGGTAATGTCTGCTCTAGGACAAGGC
ATCCTGATCCCCCTCCAAAAACCAGGAAAACCACGAGGTCCATGCAGCAG
CCTCCGACCTATAGTACTGCTAAACGGACTGAGGAAACTCTTCTCACTTA
TCGTGCTGGAACGCTGCAAGCCACAGGTGAATCTCTATCTACCGAGATCA
CAGTCTGCCTATCGCCAAGGCCACAGCACAGCTGATATAGTCTTCACCAA
GAGGATCCTTGCAGACTTAGTCATGACTAGAATGTGGGACGTTCACATCC
TCGGCATTGACCTGAGCCGTGCATTTGACACTGTGGACAGGGCTCGTCTG
TTATCATTGTTGAAAGACGTGGTGAATGACGACGACACTGTGCGAATGAT
ACAGGCCTTGTTGACAGACACAACCCTTGCCGTACGCGTACGAGGAGAAG
TAGCCCCTCAGTTCCAAGCAACTGTCGGCTCACCCCAGGGCGACAGCCTG
AGCCCTCAGCTGTTCAACGTCTACTACGAGGCAGCCCTTCGAGACTTGCG
AAGATCCTCCCCACCCATCCCTGCGGAAGACAAGCGGCTCAAGCTGGCAG
CTGAAACCCAGTATGCCGACGATCTAGACTTCATCAGCACCTCTAGTCAC
CACCTGGAGAAGATACACGAGGAAGCAATGAAGGTCCTACCAGAGTGGAA
ACTGCATGCCAATGCAGGCAAGACAGAACGGGTCCACATCTGCCATGAAA
AGGACAGGGAAGAGGAAGAATGGAGGAGAAAGAAATCGGTAGGATCCCGG
CTTGGCATCTCGGACGACATAGAAGAAAGGATACAGCTAGCCAACGTGGC
CATGAGAAAAATGTGGAGTATGTGGGGGACACAACACATCTCGTTAGAAC
TCAAGCTAAAACTCTTCCAAGTTTATGTTATACCCGTGATACTTTATAAC
GCCGGGACATGGGGACTCACCGAGCAGCTTGCGTATAAGATTGACTCATG
GCACCGGAAACAACTGAGACGTCTAACAGGTCACATCTACCCCAACTGCA
TCAGCAACGTCAAGTTGTACAACAAGTGTAGAACATCACCACTACAAAAC
GAAGTCCACCGTCGCAGATGGTTTCTCTTTGGTCACATTCTCCGTACGCC
AGAAGACTCTCCGCCACAGAAAGTGCTAAACATTGCNTGGTTTCTCTTTG
GTCACATTCTCCGTACGCCAGAAGACTCTCCGCCACAGAAAGTGCTAAAT
ATTGCCTTCAGTAAAAAACTTACACCGAGACAAGGGAGGCCCCGCGAGGG
GCTCCTAAGCAGCCTCATAGACGACTGTAAACTGTATATGAAAATGAACA
TTAGAACGGAAACCCACGTACTGAAATACCTCCGAAAAAGAGCTAGAAAC
AAACAGGATTGGGCAAAGATGTACACTGATTTGGTCAAATTGTAATCTCA
GCACATAGATATATCGATTTGACCAAGAACAGTNCTTGCGTATAAGATTG
ACTCATGGCACCGGAAACAACTGAGACGTCTAACAGGTCACATCTACCCC
AACTGCATCAGCAACGTCAAGTTGTACAACAAGTGTAGAACATCACCACT
ACAAAACGAAGTCCACCGTCGCAGATGGTTTCTCTTTGGTCACATTCTCC
GTACGCCAGAAGACTCTCCGCCACAGAAAGTGCTAAATATTGCCTTCAGT
AAAAAACTTACACCGAGACAAGGGAGGCCCCGCGAGGGGCTCCTAAGCAG
CCTCATAGACGACTGTAAACTGTAAATGAAAATGAACATTAGAACGGAAA
CCCACGTACTGAA Coding sequence (CDS) from alignment at Sc0000053:1457225..1459687+ >transcript:BL85237_cuf0 ID=transcript:BL85237_cuf0|Name=transcript:BL85237_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2094bp|location=Sequence derived from alignment at Sc0000053:1457225..1459687+ (Branchiostoma lanceolatum)
TGGGACGAAGCGGCAGCGATGTTGGTAGATCGAGGAAGGGAAGTTCTAGG
AATAGAAAAGCGAAAGAAGCATAAAGACACCTACGTCACTGATGATCCAC
AAGTCGCCAAAATGTCAAAAGAACAGAAAAATCTGCGACACAACATACAG
CAGCTTACGAGAGGAACGGTGACTCGCTCTGTGCAGGAAAAACTAAACAA
CCTCACAGCGAAAAGAAGGAGGGTACAAAACCAACAGCGTAAGAGGATAC
GGGAACTTGTCACAGCCAAGATTCACACTCAGTTAGCAGAAATAGAGGCC
ATTAAAAACGAAAACGCAAGGATGTTCGCGGCCATGAAGACCCTCAGATT
CAGTGGAGGGACAGCGCTCACTGTGTGCTCCCCGGACGGTGAGGTGCTTG
CCAAACCTCTAGACCAGGCCAAGGTCATCTCAAACTATTTTGAAGGTCTC
TTCAACATCGACGCGACACCTGTCCCTTCGCTCACAGCGGCGCCCTTGCG
CAACCCTGTAACAGCGTCGGAAGTCGCTAGGGCAGCGTCACGACTCAAGA
ATGGACGTAGTTTCGGAGCAGACGGCGTCCCGAACGAACTCTTGAAATAC
TGCTGTTCCAAGTCCGATGATCCCATGTGTACCACTACAGCGAGGATAAT
AAACGCCGTATTCAGCAAAGGAGAGGTAATGTCTGCTCTAGGACAAGGCA
TCCTGATCCCCCTCCAAAAACCAGGAAAACCACGAGGTCCATGCAGCAGC
CTCCGACCTATAGTACTGCTAAACGGACTGAGGAAACTCTTCTCACTTAT
CGTGCTGGAACGCTGCAAGCCACAGGTGAATCTCTATCTACCGAGATCAC
AGTCTGCCTATCGCCAAGGCCACAGCACAGCTGATATAGTCTTCACCAAG
AGGATCCTTGCAGACTTAGTCATGACTAGAATGTGGGACGTTCACATCCT
CGGCATTGACCTGAGCCGTGCATTTGACACTGTGGACAGGGCTCGTCTGT
TATCATTGTTGAAAGACGTGGTGAATGACGACGACACTGTGCGAATGATA
CAGGCCTTGTTGACAGACACAACCCTTGCCGTACGCGTACGAGGAGAAGT
AGCCCCTCAGTTCCAAGCAACTGTCGGCTCACCCCAGGGCGACAGCCTGA
GCCCTCAGCTGTTCAACGTCTACTACGAGGCAGCCCTTCGAGACTTGCGA
AGATCCTCCCCACCCATCCCTGCGGAAGACAAGCGGCTCAAGCTGGCAGC
TGAAACCCAGTATGCCGACGATCTAGACTTCATCAGCACCTCTAGTCACC
ACCTGGAGAAGATACACGAGGAAGCAATGAAGGTCCTACCAGAGTGGAAA
CTGCATGCCAATGCAGGCAAGACAGAACGGGTCCACATCTGCCATGAAAA
GGACAGGGAAGAGGAAGAATGGAGGAGAAAGAAATCGGTAGGATCCCGGC
TTGGCATCTCGGACGACATAGAAGAAAGGATACAGCTAGCCAACGTGGCC
ATGAGAAAAATGTGGAGTATGTGGGGGACACAACACATCTCGTTAGAACT
CAAGCTAAAACTCTTCCAAGTTTATGTTATACCCGTGATACTTTATAACG
CCGGGACATGGGGACTCACCGAGCAGCTTGCGTATAAGATTGACTCATGG
CACCGGAAACAACTGAGACGTCTAACAGGTCACATCTACCCCAACTGCAT
CAGCAACGTCAAGTTGTACAACAAGTGTAGAACATCACCACTACAAAACG
AAGTCCACCGTCGCAGATGGTTTCTCTTTGGTCACATTCTCCGTACGCCA
GAAGACTCTCCGCCACAGAAAGTGCTAAACATTGCNTGGTTTCTCTTTGG
TCACATTCTCCGTACGCCAGAAGACTCTCCGCCACAGAAAGTGCTAAATA
TTGCCTTCAGTAAAAAACTTACACCGAGACAAGGGAGGCCCCGCGAGGGG
CTCCTAAGCAGCCTCATAGACGACTGTAAACTGTATATGAAAATGAACAT
TAGAACGGAAACCCACGTACTGAAATACCTCCGAAAAAGAGCTAGAAACA
AACAGGATTGGGCAAAGATGTACACTGATTTGGTCAAATTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000053 | genome | Sc0000053:1457225..1459687 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85237_cuf0 |
| Biotype | protein_coding |
|
